title: Micro-Raman spectroscopic identification of bacterial cells of the genus Staphylococcus and dependence on their cultivation conditions.
abstract: Microbial contamination is not only a medical problem, but also plays a large role in pharmaceutical clean room production and food processing technology. Therefore many techniques were developed to achieve differentiation and identification of microorganisms. Among these methods vibrational spectroscopic techniques (IR, Raman and SERS) are useful tools because of their rapidity and sensitivity. Recently we have shown that micro-Raman spectroscopy in combination with a support vector machine is an extremely capable approach for a fast and reliable, non-destructive online identification of single bacteria belonging to different genera. In order to simulate different environmental conditions we analyzed in this contribution different Staphylococcus strains with varying cultivation conditions in order to evaluate our method with a reliable dataset. First, micro-Raman spectra of the bulk material and single bacterial cells that were grown under the same conditions were recorded and used separately for a distinct chemotaxonomic classification of the strains. Furthermore Raman spectra were recorded from single bacterial cells that were cultured under various conditions to study the influence of cultivation on the discrimination ability. This dataset was analyzed both with a hierarchical cluster analysis (HCA) and a support vector machine (SVM).
authors.affiliation: Institut für Physikalische Chemie, Friedrich-Schiller-Universität Jena, Helmholtzweg 4, 07743 Jena, Germany.
authors.forename: M
authors.initials: M
authors.lastname: Harz
authors.forename: P
authors.initials: P
authors.lastname: Rösch
authors.forename: K-D
authors.initials: KD
authors.lastname: Peschke
authors.forename: O
authors.initials: O
authors.lastname: Ronneberger
authors.forename: H
authors.initials: H
authors.lastname: Burkhardt
authors.forename: J
authors.initials: J
authors.lastname: Popp
mesh_terms: D001431:Bacteriological Techniques; D008832:Microchemistry / Q000379:methods; D013059:Spectrum Analysis, Raman / Q000379:methods; D013210:Staphylococcus / Q000302:isolation & purification*