Scaling exponents and probability distributions of DNA end-to-end distance.
The scaling of the average gyration radius of polymers as a function of their length can be experimentally determined from ensemble measurements, such as light scattering, and agrees with analytical estimates. Ensemble techniques, yet, do not give access to the full probability distributions. Single molecule techniques, instead, can deliver information on both average quantities and distribution functions. Here we exploit the high resolution of atomic force microscopy over long DNA molecules adsorbed on a surface to measure the average end-to-end distance as a function of the DNA length, and its full distribution function. We find that all the scaling exponents are close to the predicted 3D values (upsilon=0.589+/-0.006 and delta=2.58+/-0.77). These results suggest that the adsorption process is akin to a geometric projection from 3D to 2D, known to preserve the scaling properties of fractal objects of dimension df<2.
Valle
Francesco
F
Laboratory of Physics of Living Matter, IPMC, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland.
Favre
Mélanie
M
De Los Rios
Paolo
P
Rosa
Angelo
A
Dietler
Giovanni
G
D003198:Computer Simulation; D004247:DNA / Q000032:analysis / Q000737:chemistry* / Q000648:ultrastructure*; D003627:Data Interpretation, Statistical; D007090:Image Interpretation, Computer-Assisted / Q000379:methods*; D018625:Microscopy, Atomic Force / Q000379:methods*; D008956:Models, Chemical; D008958:Models, Molecular; D015233:Models, Statistical; D009690:Nucleic Acid Conformation; D010316:Particle Size; D016008:Statistical Distributions
D004247:DNA