title: Adenine and adenosine salvage pathways in erythrocytes and the role of S-adenosylhomocysteine hydrolase. A theoretical study using elementary flux modes.
abstract: This article is devoted to the study of redundancy and yield of salvage pathways in human erythrocytes. These cells are not able to synthesize ATP de novo. However, the salvage (recycling) of certain nucleosides or bases to give nucleotide triphosphates is operative. As the salvage pathways use enzymes consuming ATP as well as enzymes producing ATP, it is not easy to see whether a net synthesis of ATP is possible. As for pathways using adenosine, a straightforward assumption is that these pathways start with adenosine kinase. However, a pathway bypassing this enzyme and using S-adenosylhomocysteine hydrolase instead was reported. So far, this route has not been analysed in detail. Using the concept of elementary flux modes, we investigate theoretically which salvage pathways exist in erythrocytes, which enzymes belong to each of these and what relative fluxes these enzymes carry. Here, we compute the net overall stoichiometry of ATP build-up from the recycled substrates and show that the network has considerable redundancy. For example, four different pathways of adenine salvage and 12 different pathways of adenosine salvage are obtained. They give different ATP/glucose yields, the highest being 3:10 for adenine salvage and 2:3 for adenosine salvage provided that adenosine is not used as an energy source. Implications for enzyme deficiencies are discussed.
authors.affiliation: Department of Bioinformatics, Friedrich Schiller University, Jena, Germany. schuster@minet.uni-jena.de
authors.forename: Stefan
authors.initials: S
authors.lastname: Schuster
authors.forename: Dimitar
authors.initials: D
authors.lastname: Kenanov
mesh_terms: D036002:ADP Ribose Transferases / Q000172:deficiency / Q000378:metabolism; D000225:Adenine / Q000378:metabolism*; D000241:Adenosine / Q000378:metabolism*; D000243:Adenosine Deaminase / Q000172:deficiency / Q000378:metabolism; D000248:Adenosine Kinase / Q000172:deficiency / Q000378:metabolism; D000255:Adenosine Triphosphate / Q000378:metabolism*; D043383:Adenosylhomocysteinase / Q000378:metabolism*; D004912:Erythrocytes / Q000378:metabolism*; D006801:Humans; D008659:Metabolic Diseases / Q000378:metabolism; D008954:Models, Biological; D011683:Purine-Nucleoside Phosphorylase / Q000172:deficiency / Q000378:metabolism
chemical_list: D000255:Adenosine Triphosphate; D036002:ADP Ribose Transferases; D011683:Purine-Nucleoside Phosphorylase; D000248:Adenosine Kinase; D043383:Adenosylhomocysteinase; D000243:Adenosine Deaminase; D000225:Adenine; D000241:Adenosine