Isochorismate pyruvate lyase: a pericyclic reaction mechanism?
Isochorismate pyruvate lyase (IPL) catalyzes the cleavage of isochorismate to give salicylate and pyruvate, a key step in bacterial siderophore biosynthesis. We investigated the enzyme from Pseudomonas aeruginosa using isochorismate selectively deuterated at C2 as a substrate. Monitoring the reaction by 2H NMR spectroscopy revealed that the label is quantitatively transferred from C2 to C9, producing stoichiometric amounts of [3-2H]pyruvate as product. Moreover, the deuterium kinetic isotope effect of 2.34 +/- 0.08 on kcat indicates that C-H cleavage is significantly rate limiting. Consistent with these data, hybrid density functional theory (HDFT) calculations at the Becke3LYP/DZ+(2d,p) level of theory predict a concerted but highly asynchronous pericyclic transition structure, in which carbon-oxygen bond cleavage is more advanced than hydrogen atom transfer from C2 to C9; the calculated 2H isotope effect of 2.22 at C2 is in excellent accord with the experimental value. Together, these findings indicate that IPL should be added to the small set of proteins that are known to catalyze pericyclic reactions. They also raise the possibility that enzymes, such as chorismate pyruvate lyase, salicylate synthase, 4-amino-4-deoxychorismate lyase, and anthranilate synthase, which accelerate formally similar reaction steps, may also exploit pericyclic mechanisms.
DeClue
Michael S
MS
Laboratory of Organic Chemistry, Swiss Federal Institute of Technology, ETH Hönggerberg, CH-8093 Zürich, Switzerland.
Baldridge
Kim K
KK
Künzler
Dominik E
DE
Kast
Peter
P
Hilvert
Donald
D
D001665:Binding Sites; D002827:Chorismic Acid / Q000737:chemistry*; D003500:Cyclization; D053138:Cyclohexenes; D004926:Escherichia coli / Q000201:enzymology; D029968:Escherichia coli Proteins / Q000737:chemistry* / Q000378:metabolism; D009682:Magnetic Resonance Spectroscopy; D008958:Models, Molecular; D007652:Oxo-Acid-Lyases / Q000737:chemistry* / Q000378:metabolism; D011550:Pseudomonas aeruginosa / Q000201:enzymology
D053138:Cyclohexenes; D029968:Escherichia coli Proteins; C052985:isochorismic acid; D007652:Oxo-Acid-Lyases; C075960:chorismate pyruvate lyase; D002827:Chorismic Acid