Prediction of charge-induced molecular alignment: residual dipolar couplings at pH 3 and alignment in surfactant liquid crystalline phases.
Recently we reported that the alignment tensor of a biological macromolecule, which was dissolved in a dilute suspension of highly negatively charged filamentous phage at close to neutral pH, can be predicted from the molecule's 3D charge distribution and shape (Zweckstetter et al. 2004). Here it is demonstrated that this approach is also applicable to alignment of proteins in liquid crystalline phases formed by filamentous phage at low pH. Residual dipolar couplings (RDCs) predicted by our simple electrostatic model for the B1 domain of protein G in fd phage at pH 3 fit very well with the experimental values. The sign of charge-shape predicted one-bond (1)H-(15)N dipolar couplings for the B1 domain of protein G (GB1) was inverted at pH 3 compared to neutral pH, in agreement with experimental observations. Our predictions indicate that this is a feature specific for GB1. In addition, it is shown that RDCs induced in the protein ubiquitin by the presence of a positively charged surfactant system comprising cetylpyridinium bromide/hexanol/sodium bromide can be predicted accurately by a simple electrostatic alignment model. This shows that steric and electrostatic interactions dominate weak alignment of biomolecules for a wide range of pH values both in filamentous phage and in surfactant liquid crystalline phases.
Zweckstetter
Markus
M
Department of NMR-based Structural Biology, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany. mzwecks@gwdg.de
D040761:Biomimetic Materials / Q000737:chemistry*; D001965:Bromides / Q000737:chemistry; D002594:Cetylpyridinium / Q000737:chemistry; D003460:Crystallization; D000441:Hexanols / Q000737:chemistry; D006863:Hydrogen-Ion Concentration; D008956:Models, Chemical; D009419:Nerve Tissue Proteins / Q000737:chemistry; D017670:Sodium Compounds / Q000737:chemistry; D012996:Solutions / Q000737:chemistry; D055672:Static Electricity; D013501:Surface-Active Agents / Q000737:chemistry*; D025801:Ubiquitin / Q000737:chemistry / Q000378:metabolism
D001965:Bromides; C029152:G-substrate; D000441:Hexanols; D009419:Nerve Tissue Proteins; D017670:Sodium Compounds; D012996:Solutions; D013501:Surface-Active Agents; D025801:Ubiquitin; D002594:Cetylpyridinium; C027938:sodium bromide