title: Correlating sequential homology of Mce1A, Mce2A, Mce3A and Mce4A with their possible functions in mammalian cell entry of Mycobacterium tuberculosis performing homology modeling.
abstract: OBJECTIVE
  The striking homology of the Mycobacterium tuberculosis mammalian cell entry operons (mce1, mce2, mce3 and mce4) with other mycobacterial species and the proposed role of the mammalian cell entry protein 1A (Mce1A) of M. tuberculosis to facilitate invasion of host cells have led us to look into the finer details of these proteins in order to better understand their structure-function relationship.
  
  
  METHODS
  We performed sequential alignments and secondary structure predictions of Mce1A, Mce2A, Mce3A and Mce4A, and compared these results with results from homology modeling by fold prediction and threading.
  
  
  RESULTS
  Sequential alignments showed that Mce1A and Mce2A are highly homologous, close to 70%, while the other combinations gave only about 30% similarities. The major parts of the proteins aligned without gaps and there were striking similarities by secondary structure predictions indicating that the proteins would have similar folds and to be alpha/beta proteins like the previously reported Mce1A model based on Colicin N. Fold prediction showed that the best templates for Mce2A were substrate-binding domain of DnaK and slow processing precursor penicillin acylase from Escherichia coli while the alpha-domains of Mce3A and Mce4A could both be modeled using the cytoplasmic domain of serine chemotaxis receptor as template.
  
  
  CONCLUSIONS
  Although different templates had to be used to model the MceA proteins, functional information may be derived that is relevant for their overall function in M. tuberculosis. The beta-domain is probably involved in binding with the receptors on target cells while the alpha-domain is more likely to be involved in pore formation. As predicted from the folds, Mce3A and Mce4A model structures indicate a lipid bound conformation and therefore may be required in signaling events of the mammalian cell entry process.
authors.affiliation: Department of Biotechnology, Indian Institute of Technology, Kharagpur 721 302, West Bengal, India.
authors.forename: D
authors.initials: D
authors.lastname: Mitra
authors.forename: B
authors.initials: B
authors.lastname: Saha
authors.forename: D
authors.initials: D
authors.lastname: Das
authors.forename: H G
authors.initials: HG
authors.lastname: Wiker
authors.forename: A K
authors.initials: AK
authors.lastname: Das
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D000942:Antigens, Bacterial / Q000235:genetics; D001426:Bacterial Proteins / Q000235:genetics / Q000378:metabolism*; D001483:Base Sequence; D004269:DNA, Bacterial; D015964:Gene Expression Regulation, Bacterial; D008957:Models, Genetic; D008969:Molecular Sequence Data; D009169:Mycobacterium tuberculosis / Q000235:genetics* / Q000472:pathogenicity; D009876:Operon; D017386:Sequence Homology, Amino Acid; D013329:Structure-Activity Relationship; D014397:Tuberculosis, Pulmonary / Q000382:microbiology*; D014774:Virulence / Q000235:genetics
chemical_list: D000942:Antigens, Bacterial; D001426:Bacterial Proteins; D004269:DNA, Bacterial; C510663:Mce3A protein, Mycobacterium tuberculosis; C510664:Mce4A protein, Mycobacterium tuberculosis; C473802:mammalian cell entry protein Mce1A, Mycobacterium tuberculosis; C443482:mce2 protein, Mycobacterium tuberculosis