title: Dual promoters control the cell-specific expression of the human cell death-inducing DFF45-like effector B gene.
abstract: CIDE-B [cell death-inducing DFF45 (DNA fragmentation factor 45)-like effector B] is a member of the CIDE family of apoptosis-inducing factors. The highly restricted pattern of expression of CIDE-B in the liver and spleen suggests that a mechanism exists for the tissue- and cell-specific regulation of transcription of this gene. We have analysed the promoters of the human CIDE-B gene, particularly the mechanism of cell-specific transcription. Expression of CIDE-B is driven by two promoters which are responsible for the synthesis of two types of transcript, and Sp1 and Sp3 are key regulators of basal transcription from both the upstream and the internal promoter, as indicated by EMSAs (electrophoretic mobility-shift assays) and site-directed mutagenesis. Bisulphite sequencing analysis demonstrated that the upstream promoter was hypermethylated in cells that did not express the long transcript of CIDE-B, but was hypomethylated in cells that expressed this transcript. Furthermore, methylation of this region in vitro reduced the promoter activity to approximately 5% of the control. Thus methylation at CpG sites in the upstream promoter region appeared to be important for cell-specific synthesis of the long transcript. By contrast, HNF4alpha (hepatocyte nuclear factor-4alpha) bound to the internal promoter and enhanced its activity. Moreover, the short transcript of CIDE-B gene was expressed in cells which do not normally express this transcript upon introduction of exogenous HNF4alpha, demonstrating the involvement of HNF4alpha in the cell-specific synthesis of the short transcript. Thus our analysis revealed a novel mechanism for the cell-specific transcription of the human CIDE-B gene, which involves epigenetic and genetic control at separate respective promoters.
authors.affiliation: State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China.
authors.forename: Liang
authors.initials: L
authors.lastname: Da
authors.forename: Dong
authors.initials: D
authors.lastname: Li
authors.forename: Kazunari K
authors.initials: KK
authors.lastname: Yokoyama
authors.forename: Tsaiping
authors.initials: T
authors.lastname: Li
authors.forename: Mujun
authors.initials: M
authors.lastname: Zhao
mesh_terms: D051017:Apoptosis Regulatory Proteins / Q000235:genetics*; D002460:Cell Line; D018899:CpG Islands; D005786:Gene Expression Regulation / Q000235:genetics*; D051557:Hepatocyte Nuclear Factor 4 / Q000378:metabolism; D006801:Humans; D008745:Methylation; D008969:Molecular Sequence Data; D011401:Promoter Regions, Genetic / Q000235:genetics*; D011485:Protein Binding; D016329:Sp1 Transcription Factor / Q000378:metabolism; D051705:Sp3 Transcription Factor / Q000378:metabolism
chemical_list: D051017:Apoptosis Regulatory Proteins; C112511:CIDEB protein, human; D051557:Hepatocyte Nuclear Factor 4; D016329:Sp1 Transcription Factor; D051705:Sp3 Transcription Factor