[Analysis of signal peptides of the secreted proteins in Agrobacterium tumefaciens C58].
The 4554 ORFs of Agrobacterium tumefaciens C58 Cereon were used for the prediction of signal peptides by the network tools, such as SignalP3.0, LipoP1.0, TMHMM2.0 and TargetP1.01. Total 203 signal peptides with conserved amino residues are found, among them, 158 are secretary types, 9 are RR-motif types, 28 are SignalPase II types and 8 are bacteriocin-pheromone types. However, only two signal peptides from the secreted proteins, AGR-C-1878p and AGR-C-1880p have the same amino sequences, showing the signal peptides of the strain are highly variable.
Fan
Cheng-Ming
CM
Plant Protection College, Yunnan Agricultural University, Yunnan Agricultural University, Kunming 650201, China. fanchengming@126.com
Li
Cheng-Yun
CY
Zhao
Ming-Fu
MF
He
Yue-Qiu
YQ
D016960:Agrobacterium tumefaciens / Q000737:chemistry* / Q000378:metabolism; D000595:Amino Acid Sequence; D001426:Bacterial Proteins / Q000032:analysis* / Q000378:metabolism; D008969:Molecular Sequence Data; D021382:Protein Sorting Signals
D001426:Bacterial Proteins; D021382:Protein Sorting Signals