title: A method adapting microarray technology for signature-tagged mutagenesis of Desulfovibrio desulfuricans G20 and Shewanella oneidensis MR-1 in anaerobic sediment survival experiments.
abstract: Signature-tagged mutagenesis (STM) is a powerful technique that can be used to identify genes expressed by bacteria during exposure to conditions in their natural environments. To date, there have been no reports of studies in which this approach was used to study organisms of environmental, rather than pathogenic, significance. We used a mini-Tn10 transposon-bearing plasmid, pBSL180, that efficiently and randomly mutagenized Desulfovibrio desulfuricans G20 in addition to Shewanella oneidensis MR-1. Using these organisms as model sediment-dwelling anaerobic bacteria, we developed a new screening system, modified from former STM procedures, to identify genes that are critical for sediment survival. The screening system uses microarray technology to visualize tags from input and output pools, allowing us to identify those lost during sediment incubations. While the majority of data on survival genes identified will be presented in future papers, we report here on chemotaxis-related genes identified by our STM method in both bacteria in order to validate our method. This system may be applicable to the study of numerous environmental bacteria, allowing us to identify functions and roles of survival genes in various habitats.
authors.affiliation: Department of Botany and Microbiology, University of Oklahoma, Norman, OK 73019, USA.
authors.forename: Jennifer L
authors.initials: JL
authors.lastname: Groh
authors.forename: Qingwei
authors.initials: Q
authors.lastname: Luo
authors.forename: Jimmy D
authors.initials: JD
authors.lastname: Ballard
authors.forename: Lee R
authors.initials: LR
authors.lastname: Krumholz
mesh_terms: D000693:Anaerobiosis; D001426:Bacterial Proteins / Q000235:genetics* / Q000378:metabolism; D016887:Cardiopulmonary Resuscitation; D004251:DNA Transposable Elements; D004269:DNA, Bacterial / Q000032:analysis; D045285:Desulfovibrio desulfuricans / Q000235:genetics / Q000254:growth & development* / Q000378:metabolism; D020869:Gene Expression Profiling; D019015:Geologic Sediments / Q000382:microbiology*; D016254:Mutagenesis, Insertional; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D010957:Plasmids; D020592:Shewanella / Q000235:genetics / Q000254:growth & development* / Q000378:metabolism
chemical_list: D001426:Bacterial Proteins; D004251:DNA Transposable Elements; D004269:DNA, Bacterial