title: Investigation into a school enterovirus outbreak using PCR detection and serotype identification based on the 5' non-coding region.
abstract: A summer camp was followed by an outbreak of illness involving around 90 children. Investigations included individual questionnaires, inspection of the camp facilities, and laboratory analysis of water and clinical samples. Contamination of drinking and swimming water was demonstrated. An enterovirus was detected by polymerase chain reaction (PCR) and/or culture in 4/4 cerebrospinal fluid samples, 9/15 (60%) stool samples from symptomatic children and 2/9 (22%) stool samples from asymptomatic children. The virus was identified as an echovirus 3 by sequencing and phylogenetic analysis of a short 5' non-coding region (NCR) PCR product. Viruses from the outbreak clustered closely and an echovirus 3 from a temporally associated non-outbreak case could be readily distinguished. Despite the lack of a standardized approach, direct molecular detection and identification of enteroviruses is an efficient epidemiological tool. Here the 5'-NCR was successfully used for both detection and 'serotyping', and the close genetic relatedness of isolates was proven.
authors.affiliation: Diagnostic Virology Laboratory, University of Cape Town & National Health Laboratory Service, South Africa. jky@telkomsa.net
authors.forename: J
authors.initials: J
authors.lastname: Yeats
authors.forename: H
authors.initials: H
authors.lastname: Smuts
authors.forename: C J
authors.initials: CJ
authors.lastname: Serfontein
authors.forename: J
authors.initials: J
authors.lastname: Kannemeyer
mesh_terms: D020121:5' Untranslated Regions / Q000032:analysis* / Q000235:genetics; D002648:Child; D004196:Disease Outbreaks; D029822:Enterovirus B, Human / Q000235:genetics / Q000302:isolation & purification*; D004769:Enterovirus Infections / Q000134:cerebrospinal fluid / Q000453:epidemiology* / Q000821:virology; D005243:Feces / Q000821:virology; D005260:Female; D006801:Humans; D008297:Male; D010802:Phylogeny; D016133:Polymerase Chain Reaction; D012574:Schools; D012703:Serotyping
chemical_list: D020121:5' Untranslated Regions