title: Cell-free synthesis of recombinant proteins from PCR-amplified genes at a comparable productivity to that of plasmid-based reactions.
abstract: The functional stability of mRNA is one of the crucial factors affecting the efficiency of cell-free protein synthesis. The importance of the stability of mRNA in the prolonged synthesis of protein molecules becomes even greater when the cell-free protein synthesis is directed by PCR-amplified DNAs, because the linear DNAs are rapidly degraded by the endogenous nucleases and, thus, the continuous generation of mRNA molecules is limited. With the aim of developing a highly efficient cell-free protein synthesis system directed by PCR products, in this study, we describe a systematic approach to enhance the stability of mRNA in cell-free extracts. First, exonuclease-mediated degradation was substantially reduced by introducing a stem-loop structure at the 3'-end of the mRNA. The endonucleolytic cleavage of the mRNA was minimized by using an S30 extract prepared from an Escherichia coli strain that is deficient in a major endonuclease (RNase E). Taken together, through the retardation of the endonucleolytic and exonucleolytic degradations of the mRNA molecules, the level of protein expression from the PCR-amplified DNA templates becomes comparable to that of conventional plasmid-based reactions. The enhanced productivity of the PCR-based cell-free protein synthesis enables the high-throughput generation of protein molecules required for many post-genomic applications.
authors.affiliation: Interdisciplinary Program for Biochemical Engineering and Biotechnology, Seoul National University, Seoul 151-742, Republic of Korea.
authors.forename: Jin-Ho
authors.initials: JH
authors.lastname: Ahn
authors.forename: Hun-Su
authors.initials: HS
authors.lastname: Chu
authors.forename: Tae-Wan
authors.initials: TW
authors.lastname: Kim
authors.forename: In-Seok
authors.initials: IS
authors.lastname: Oh
authors.forename: Cha-Yong
authors.initials: CY
authors.lastname: Choi
authors.forename: Geun-Hee
authors.initials: GH
authors.lastname: Hahn
authors.forename: Chang-Gil
authors.initials: CG
authors.lastname: Park
authors.forename: Dong-Myung
authors.initials: DM
authors.lastname: Kim
mesh_terms: D002457:Cell Extracts; D002474:Cell-Free System; D004722:Endoribonucleases / Q000172:deficiency / Q000235:genetics / Q000378:metabolism; D009154:Mutation / Q000235:genetics; D010957:Plasmids / Q000235:genetics*; D016133:Polymerase Chain Reaction; D014176:Protein Biosynthesis; D017433:Protein Structure, Secondary; D020871:RNA Stability; D011994:Recombinant Proteins / Q000096:biosynthesis* / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism
chemical_list: D002457:Cell Extracts; D011994:Recombinant Proteins; D004722:Endoribonucleases; C022537:ribonuclease E