Nexplorer: phylogeny-based exploration of sequence family data.
CONCLUSIONS
Nexplorer is a web-based program for interactive browsing and manipulation of character data in NEXUS format, well suited for use with alignments and trees representing families of homologous genes or proteins. Users may upload a sequence family dataset, or choose from one of several thousand already available. Nexplorer provides a flexible means to develop customized views that combine a tree and a data matrix or alignment, to create subsets of data, and to output data files or publication-quality graphics.


BACKGROUND
Web access is from http://www.molevol.org/nexplorer
Gopalan
Vivek
V
Center for Advanced Research in Biotechnology, 9600 Gudelsky Drive, Rockville, MD 20850, USA.
Qiu
Wei-Gang
WG
Chen
Michael Z
MZ
Stoltzfus
Arlin
A
D000818:Animals; D019295:Computational Biology / Q000379:methods*; D003196:Computer Graphics; D030562:Databases, Protein; D006801:Humans; D020407:Internet; D025261:Mitochondrial Proton-Translocating ATPases / Q000235:genetics; D010802:Phylogeny; D011381:Programming Languages; D016415:Sequence Alignment; D017422:Sequence Analysis, DNA; D020539:Sequence Analysis, Protein; D012984:Software; D014584:User-Computer Interface
D025261:Mitochondrial Proton-Translocating ATPases