title: Reorganization of RNA polymerase II on the SV40 genome occurs coordinately with the early to late transcriptional switch.
abstract: The pattern of organization of RNA polymerase II (RNAPII) in wild-type and mutant cs1085 SV40 chromosomes isolated between 30 min and 48 h post-infection was determined using a combination of chromatin immunoprecipitation (ChIP) techniques. During the course of a wild-type infection, we observed a slow but significant decline in the relative occupancy of RNAPII at the early region and a corresponding increase in occupation in the late region. In the promoter, occupancy began high, decreased to a minimum at 8 h post-infection, and then increased to a high level by 48 h post-infection. In the mutant cs1085, which does not down-regulate early transcription, we observed high occupancy of the early region and the promoter throughout the infection. The changing organization of RNAPII on the wild-type SV40 but not the mutant cs1085 genome appears to be a result of the switch from early to late transcription.
authors.affiliation: Department of Biochemistry and Molecular Biology, University of North Dakota, Grand Forks, ND 58203, USA.
authors.forename: Lata
authors.initials: L
authors.lastname: Balakrishnan
authors.forename: Barry
authors.initials: B
authors.lastname: Milavetz
mesh_terms: D000818:Animals; D002460:Cell Line; D047369:Chromatin Immunoprecipitation; D004279:DNA, Viral / Q000302:isolation & purification / Q000378:metabolism*; D016679:Genome, Viral; D000882:Haplorhini; D011401:Promoter Regions, Genetic; D011485:Protein Binding; D012319:RNA Polymerase II / Q000302:isolation & purification / Q000378:metabolism*; D012333:RNA, Messenger / Q000032:analysis; D012367:RNA, Viral / Q000032:analysis; D013539:Simian virus 40 / Q000235:genetics* / Q000502:physiology; D013997:Time Factors; D014158:Transcription, Genetic; D014764:Viral Proteins / Q000302:isolation & purification / Q000378:metabolism; D014779:Virus Replication
chemical_list: D004279:DNA, Viral; D012333:RNA, Messenger; D012367:RNA, Viral; D014764:Viral Proteins; D012319:RNA Polymerase II