title: Ribosome occupancy of the yeast CPA1 upstream open reading frame termination codon modulates nonsense-mediated mRNA decay.
abstract: Saccharomyces cerevisiae CPA1 mRNA contains an upstream open reading frame (uORF) encoding the arginine attenuator peptide (AAP). Negative translational regulation of CPA1 occurs when the nascent AAP responds to arginine (Arg) by stalling ribosomes at the uORF termination codon. CPA1 expression is also controlled by nonsense-mediated mRNA decay (NMD). Using wild-type and decay-defective strains expressing CPA1-LUC, we determined how this uORF contributes to NMD control. Arg addition to media rapidly destabilized the CPA1 transcript in wild-type but not upf1delta cells. The wild-type uORF exerted translational control and induced NMD of CPA1-LUC; the mutated D13N uORF, which eliminates stalling and regulation, did not. Thus, regulation by NMD was not governed simply by ribosomes encountering the uORF terminator but appeared dependent on the AAP's ribosome-stalling ability. Improving the D13N uORF initiation context also promoted NMD. Hence, NMD appears to be triggered by increased ribosomal occupancy of the uORF termination codon.
authors.affiliation: Department of Environmental and Biomolecular Systems, Oregon Health and Science University, Beaverton, Oregon 97006, USA.
authors.forename: Anthony
authors.initials: A
authors.lastname: Gaba
authors.forename: Allan
authors.initials: A
authors.lastname: Jacobson
authors.forename: Matthew S
authors.initials: MS
authors.lastname: Sachs
mesh_terms: D002223:Carbamoyl-Phosphate Synthase (Glutamine-Hydrolyzing) / Q000096:biosynthesis* / Q000235:genetics; D018388:Codon, Terminator / Q000502:physiology*; D017353:Gene Deletion; D016366:Open Reading Frames / Q000502:physiology*; D014176:Protein Biosynthesis / Q000502:physiology*; D020365:RNA Helicases / Q000235:genetics / Q000378:metabolism; D020871:RNA Stability / Q000502:physiology*; D012270:Ribosomes / Q000378:metabolism; D012441:Saccharomyces cerevisiae / Q000502:physiology*; D029701:Saccharomyces cerevisiae Proteins / Q000096:biosynthesis* / Q000235:genetics / Q000378:metabolism; D013045:Species Specificity
chemical_list: D018388:Codon, Terminator; D029701:Saccharomyces cerevisiae Proteins; C074151:NAM7 protein, S cerevisiae; D020365:RNA Helicases; C403521:CPA1 protein, S cerevisiae; D002223:Carbamoyl-Phosphate Synthase (Glutamine-Hydrolyzing)