title: Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana.
abstract: Auxin regulates various aspects of plant growth and development. The AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) genes encode short-lived transcriptional repressors that are targeted by the TRANSPORT INHIBITOR RESPONSE1/AUXIN RECEPTOR F-BOX proteins. The Aux/IAA proteins regulate auxin-mediated gene expression by interacting with members of the AUXIN RESPONSE FACTOR protein family. Aux/IAA function is poorly understood; herein, we report the identification and characterization of insertion mutants in 12 of the 29 Aux/IAA family members. The mutants show no visible developmental defects compared with the wild type. Double or triple mutants of closely related Aux/IAA genes, such as iaa8-1 iaa9-1 or iaa5-1 iaa6-1 iaa19-1, also exhibit wild-type phenotypes. Global gene expression analysis reveals that the molecular phenotypes of auxin-treated and untreated light-grown seedlings are unaffected in the iaa17-6 and iaa5-1 iaa6-1 iaa19-1 mutants. By contrast, similar analysis with the gain-of-function axr3-1/iaa17-1 mutant seedlings reveals dramatic changes in basal and auxin-induced gene expression compared with the wild type. Expression of several type-A ARABIDOPSIS RESPONSE REGULATOR genes and a number of genes involved in cell wall biosynthesis and degradation is repressed in axr3-1/iaa17-1. The data suggest extensive functional redundancy among Aux/IAA gene family members and that enhanced stability of the AXR3/IAA17 protein severely alters the molecular phenotype, resulting in developmental defects.
authors.affiliation: Plant Gene Expression Center, Albany, California 94710, USA.
authors.forename: Paul J
authors.initials: PJ
authors.lastname: Overvoorde
authors.forename: Yoko
authors.initials: Y
authors.lastname: Okushima
authors.forename: José M
authors.initials: JM
authors.lastname: Alonso
authors.forename: April
authors.initials: A
authors.lastname: Chan
authors.forename: Charlie
authors.initials: C
authors.lastname: Chang
authors.forename: Joseph R
authors.initials: JR
authors.lastname: Ecker
authors.forename: Beth
authors.initials: B
authors.lastname: Hughes
authors.forename: Amy
authors.initials: A
authors.lastname: Liu
authors.forename: Courtney
authors.initials: C
authors.lastname: Onodera
authors.forename: Hong
authors.initials: H
authors.lastname: Quach
authors.forename: Alison
authors.initials: A
authors.lastname: Smith
authors.forename: Guixia
authors.initials: G
authors.lastname: Yu
authors.forename: Athanasios
authors.initials: A
authors.lastname: Theologis
mesh_terms: D000595:Amino Acid Sequence; D017360:Arabidopsis / Q000235:genetics* / Q000254:growth & development; D018506:Gene Expression Regulation, Plant / Q000235:genetics; D018745:Genome, Plant; D007210:Indoleacetic Acids / Q000737:chemistry / Q000378:metabolism*; D008969:Molecular Sequence Data; D005810:Multigene Family; D016254:Mutagenesis, Insertional; D017386:Sequence Homology, Amino Acid
chemical_list: D007210:Indoleacetic Acids; C030737:indoleacetic acid