title: Identification of BCOX1, a novel gene overexpressed in breast cancer.
abstract: The identification of tumor-associated antigens, which are specifically expressed in cancer tissues, is of utmost important for immunotherapy of breast cancer. We have combined in silico screening and experimental expression analysis to identify genes that are differentially expressed in breast carcinomas compared with their corresponding normal tissues. Using these approaches, we identified a novel gene, BCOX1, with overexpression in breast carcinoma. BCOX1 was highly homologous to KIAA0100, a hypothetical gene located on chromosome 17q11.2. RNA in situ hybridization shows that BCOX1 mRNA signal is mainly located in the cytoplasm of breast carcinoma epithelial cells, but not in those of normal epithelial cells, stroma cells and lymphocytes. Furthermore, mRNA expression of BCOX1 was moderately elevated in ductal in situ carcinoma (DCIS), peaked in invasive breast carcinoma (IBC) and metastatic breast carcinoma cells (MET) whereas absent in benign ductal epithelial cells. The predicted BCOX1 open reading frame of 666 bp encodes a putative protein of 222 amino acid residues with a calculated molecular weight of 2,4920 Da and a PI of 5.86. Computational analyses predict that the putative BCOX1 protein is a cytoplasmic protein. The functional relevance of this novel gene is yet to be determined. This study warrants further investigations to explore the molecular functions of BCOX1, and to determine its potential diagnostic and therapeutic applications for breast cancer.
authors.affiliation: Department of Pathology, Johns Hopkins Medical Institutions, 417 N. Caroline Str., Baltimore, MD 21231, USA.
authors.forename: Jin
authors.initials: J
authors.lastname: Song
authors.forename: Wanjun
authors.initials: W
authors.lastname: Yang
authors.forename: Ie-Ming
authors.initials: IeM
authors.lastname: Shih
authors.forename: Zhen
authors.initials: Z
authors.lastname: Zhang
authors.forename: Jining
authors.initials: J
authors.lastname: Bai
mesh_terms: D000951:Antigens, Neoplasm / Q000032:analysis* / Q000235:genetics; D001943:Breast Neoplasms / Q000737:chemistry* / Q000235:genetics*; D002886:Chromosomes, Human, Pair 17; D019295:Computational Biology; D003593:Cytoplasm / Q000737:chemistry; D004847:Epithelial Cells / Q000737:chemistry; D005260:Female; D020869:Gene Expression Profiling; D015972:Gene Expression Regulation, Neoplastic; D006801:Humans; D008969:Molecular Sequence Data; D009363:Neoplasm Proteins / Q000032:analysis / Q000235:genetics*; D016366:Open Reading Frames; D012333:RNA, Messenger / Q000032:analysis; D014018:Tissue Distribution
chemical_list: D000951:Antigens, Neoplasm; D009363:Neoplasm Proteins; D012333:RNA, Messenger; C510758:BLTP2 protein, human