title: PATIKAweb: a Web interface for analyzing biological pathways through advanced querying and visualization.
abstract: Patikaweb provides a Web interface for retrieving and analyzing biological pathways in the Patika database, which contains data integrated from various prominent public pathway databases. It features a user-friendly interface, dynamic visualization and automated layout, advanced graph-theoretic queries for extracting biologically important phenomena, local persistence capability and exporting facilities to various pathway exchange formats.
authors.affiliation: Bilkent Center for Bioinformatics (BCBI), Bilkent University, Ankara 06800, Turkey. patikaweb@cs.bilkent.edu.tr
authors.forename: U
authors.initials: U
authors.lastname: Dogrusoz
authors.forename: E Z
authors.initials: EZ
authors.lastname: Erson
authors.forename: E
authors.initials: E
authors.lastname: Giral
authors.forename: E
authors.initials: E
authors.lastname: Demir
authors.forename: O
authors.initials: O
authors.lastname: Babur
authors.forename: A
authors.initials: A
authors.lastname: Cetintas
authors.forename: R
authors.initials: R
authors.lastname: Colak
mesh_terms: D003196:Computer Graphics; D003198:Computer Simulation; D003628:Database Management Systems; D016208:Databases, Factual; D005786:Gene Expression Regulation / Q000502:physiology*; D016247:Information Storage and Retrieval / Q000379:methods; D020407:Internet; D008954:Models, Biological; D009862:Online Systems; D025941:Protein Interaction Mapping / Q000379:methods*; D020543:Proteome / Q000378:metabolism*; D015398:Signal Transduction / Q000502:physiology*; D012984:Software; D014584:User-Computer Interface
chemical_list: D020543:Proteome