title: Hybridization signatures of gamma-irradiated murine fetal thymus organ culture (FTOC) reveal modulation of genes associated with T-cell receptor V(D)J recombination and DNA repair.
abstract: In this study, we observed the occurrence of TRBV8.1-DB2.1 V(D)J recombination in murine fetal thymus organ culture (FTOC), in which the thymic microenvironment is mimicked. Since ionizing radiation affects T-cell development, we irradiated FTOCs with gamma rays to evaluate the modulation of genes implicated in TRBV8.1-BD2.1 rearrangements. The nylon cDNA microarray method was employed to monitor the expression of 9216 genes, which were organized in coexpression clusters. Clustering analysis showed similar expression profiling of genes implicated in the V(D)J recombination and DNA double strand break (DSB) repair processes such as XRCC4, RAG-2, Artemis and DNA-PK-cs, thus suggesting overlap between the two processes. The RUNX3 gene, whose coded protein binds to the enhancers of TR genes, was also modulated and the DNA cross-linking LR1 gene, which plays a role in the opening of hairpin DNA structures and whose expression pattern is similar to Artemis, may play a role in the control of V(D)J recombination. Furthermore, our data demonstrate that the FTOC model system and cDNA microarray method are useful tools to evidentiate genes that may play a role in both processes V(D)J recombination and DNA repair.
authors.affiliation: Molecular Immunogenetics Group, Department of Genetics, Faculty of Medicine, University of São Paulo (USP), 14040-900 Ribeirão Preto, SP, Brazil.
authors.forename: Renato S
authors.initials: RS
authors.lastname: Cardoso
authors.forename: Cristina M
authors.initials: CM
authors.lastname: Junta
authors.forename: Claudia
authors.initials: C
authors.lastname: Macedo
authors.forename: Danielle A R
authors.initials: DA
authors.lastname: Magalhães
authors.forename: Eduardo L V
authors.initials: EL
authors.lastname: Silveira
authors.forename: Marina O
authors.initials: MO
authors.lastname: Paula
authors.forename: Márcia M C
authors.initials: MM
authors.lastname: Marques
authors.forename: Stephano S
authors.initials: SS
authors.lastname: Mello
authors.forename: Carlos R
authors.initials: CR
authors.lastname: Zárate-Bladés
authors.forename: Catherine
authors.initials: C
authors.lastname: Nguyen
authors.forename: Remi
authors.initials: R
authors.lastname: Houlgatte
authors.forename: Eduardo A
authors.initials: EA
authors.lastname: Donadi
authors.forename: Elza T
authors.initials: ET
authors.lastname: Sakamoto-Hojo
authors.forename: Geraldo A S
authors.initials: GA
authors.lastname: Passos
mesh_terms: D000818:Animals; D002454:Cell Differentiation; D016000:Cluster Analysis; D004260:DNA Repair / Q000235:genetics*; D018076:DNA, Complementary / Q000235:genetics; D005720:Gamma Rays; D020869:Gene Expression Profiling; D015333:Gene Rearrangement, beta-Chain T-Cell Antigen Receptor; D051379:Mice; D008807:Mice, Inbred BALB C; D009693:Nucleic Acid Hybridization; D020411:Oligonucleotide Array Sequence Analysis; D009924:Organ Culture Techniques; D016133:Polymerase Chain Reaction / Q000379:methods; D016693:Receptors, Antigen, T-Cell, alpha-beta / Q000235:genetics; D013601:T-Lymphocytes / Q000166:cytology / Q000528:radiation effects; D013950:Thymus Gland / Q000196:embryology / Q000378:metabolism / Q000528:radiation effects*; D045567:VDJ Recombinases / Q000378:metabolism*
chemical_list: D018076:DNA, Complementary; D016693:Receptors, Antigen, T-Cell, alpha-beta; D045567:VDJ Recombinases