title: Interaction of the G' domain of elongation factor G and the C-terminal domain of ribosomal protein L7/L12 during translocation as revealed by cryo-EM.
abstract: During tRNA translocation on the ribosome, an arc-like connection (ALC) is formed between the G' domain of elongation factor G (EF-G) and the L7/L12-stalk base of the large ribosomal subunit in the GDP state. To delineate the boundary of EF-G within the ALC, we tagged an amino acid residue near the tip of the G' domain of EF-G with undecagold, which was then visualized with three-dimensional cryo-electron microscopy (cryo-EM). Two distinct positions for the undecagold, observed in the GTP-state and GDP-state cryo-EM maps of the ribosome bound EF-G, allowed us to determine the movement of the labeled amino acid. Molecular analyses of the cryo-EM maps show: (1) that three structural components, the N-terminal domain of ribosomal protein L11, the C-terminal domain of ribosomal protein L7/L12, and the G' domain of EF-G, participate in formation of the ALC; and (2) that both EF-G and the ribosomal protein L7/L12 undergo large conformational changes to form the ALC.
authors.affiliation: Division of Molecular Medicine, Wadsworth Center, New York State Department of Health, Empire State Plaza, P.O. Box 509, Albany, New York 12201, USA.
authors.forename: Partha P
authors.initials: PP
authors.lastname: Datta
authors.forename: Manjuli R
authors.initials: MR
authors.lastname: Sharma
authors.forename: Li
authors.initials: L
authors.lastname: Qi
authors.forename: Joachim
authors.initials: J
authors.lastname: Frank
authors.forename: Rajendra K
authors.initials: RK
authors.lastname: Agrawal
mesh_terms: D020285:Cryoelectron Microscopy / Q000379:methods*; D018360:Crystallography, X-Ray; D004926:Escherichia coli / Q000737:chemistry / Q000378:metabolism; D006046:Gold / Q000737:chemistry; D006868:Hydrolysis; D008958:Models, Molecular; D020653:Peptide Elongation Factor G / Q000737:chemistry / Q000378:metabolism*; D011487:Protein Conformation; D017434:Protein Structure, Tertiary; D012343:RNA, Transfer / Q000737:chemistry / Q000378:metabolism*; D012269:Ribosomal Proteins / Q000737:chemistry / Q000378:metabolism*; D012270:Ribosomes / Q000737:chemistry / Q000378:metabolism / Q000648:ultrastructure
chemical_list: D020653:Peptide Elongation Factor G; D012269:Ribosomal Proteins; C016700:ribosomal protein L7-L12; D006046:Gold; D012343:RNA, Transfer