title: Whole-genome transcriptional analysis of heavy metal stresses in Caulobacter crescentus.
abstract: The bacterium Caulobacter crescentus and related stalk bacterial species are known for their distinctive ability to live in low-nutrient environments, a characteristic of most heavy metal-contaminated sites. Caulobacter crescentus is a model organism for studying cell cycle regulation with well-developed genetics. We have identified the pathways responding to heavy-metal toxicity in C. crescentus to provide insights for the possible application of Caulobacter to environmental restoration. We exposed C. crescentus cells to four heavy metals (chromium, cadmium, selenium, and uranium) and analyzed genome-wide transcriptional activities postexposure using an Affymetrix GeneChip microarray. C. crescentus showed surprisingly high tolerance to uranium, a possible mechanism for which may be the formation of extracellular calcium-uranium-phosphate precipitates. The principal response to these metals was protection against oxidative stress (up-regulation of manganese-dependent superoxide dismutase sodA). Glutathione S-transferase, thioredoxin, glutaredoxins, and DNA repair enzymes responded most strongly to cadmium and chromate. The cadmium and chromium stress response also focused on reducing the intracellular metal concentration, with multiple efflux pumps employed to remove cadmium, while a sulfate transporter was down-regulated to reduce nonspecific uptake of chromium. Membrane proteins were also up-regulated in response to most of the metals tested. A two-component signal transduction system involved in the uranium response was identified. Several differentially regulated transcripts from regions previously not known to encode proteins were identified, demonstrating the advantage of evaluating the transcriptome by using whole-genome microarrays.
authors.affiliation: Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mail Stop 70A3317, Berkeley, CA 94720, USA.
authors.forename: Ping
authors.initials: P
authors.lastname: Hu
authors.forename: Eoin L
authors.initials: EL
authors.lastname: Brodie
authors.forename: Yohey
authors.initials: Y
authors.lastname: Suzuki
authors.forename: Harley H
authors.initials: HH
authors.lastname: McAdams
authors.forename: Gary L
authors.initials: GL
authors.lastname: Andersen
mesh_terms: D000222:Adaptation, Physiological / Q000235:genetics; D000595:Amino Acid Sequence; D001426:Bacterial Proteins / Q000235:genetics; D001693:Biological Transport, Active / Q000235:genetics; D016935:Caulobacter crescentus / Q000187:drug effects* / Q000235:genetics*; D045643:DNA Repair Enzymes / Q000235:genetics; D020869:Gene Expression Profiling; D015964:Gene Expression Regulation, Bacterial; D016680:Genome, Bacterial; D054477:Glutaredoxins; D005982:Glutathione Transferase / Q000235:genetics; D019216:Metals, Heavy / Q000633:toxicity*; D008969:Molecular Sequence Data; D020411:Oligonucleotide Array Sequence Analysis; D018384:Oxidative Stress / Q000235:genetics; D010088:Oxidoreductases / Q000235:genetics; D012329:RNA, Bacterial / Q000032:analysis; D012333:RNA, Messenger / Q000032:analysis; D015398:Signal Transduction / Q000235:genetics; D013482:Superoxide Dismutase / Q000235:genetics; D013879:Thioredoxins / Q000235:genetics; D014158:Transcription, Genetic / Q000187:drug effects*
chemical_list: D001426:Bacterial Proteins; D054477:Glutaredoxins; D019216:Metals, Heavy; D012329:RNA, Bacterial; D012333:RNA, Messenger; D013879:Thioredoxins; D010088:Oxidoreductases; C095500:SodA protein, Bacteria; D013482:Superoxide Dismutase; D005982:Glutathione Transferase; D045643:DNA Repair Enzymes