title: Biodegradation efficiency of functionally important populations selected for bioaugmentation in phenol- and oil-polluted area.
abstract: Denaturing gradient gel electrophoresis of amplified fragments of genes coding for 16S rRNA and for the largest subunit of multicomponent phenol hydroxylase (LmPH) was used to monitor the behaviour and relative abundance of mixed phenol-degrading bacterial populations (Pseudomonas mendocina PC1, P. fluorescens strains PC18, PC20 and PC24) during degradation of phenolic compounds in phenolic leachate- and oil-amended microcosms. The analysis indicated that specific bacterial populations were selected in each microcosm. The naphthalene-degrading strain PC20 was the dominant degrader in oil-amended microcosms and strain PC1 in phenolic leachate microcosms. Strain PC20 was not detectable after cultivation in phenolic leachate microcosms. Mixed bacterial populations in oil-amended microcosms aggregated and formed clumps, whereas the same bacteria had a planktonic mode of growth in phenolic leachate microcosms. Colony hybridisation data with catabolic gene specific probes indicated that, in leachate microcosms, the relative proportions of bacteria having meta (PC1) and ortho (PC24) pathways for degradation of phenol and p-cresol changed alternately. The shifts in the composition of mixed population indicated that different pathways of metabolism of aromatic compounds dominated and that this process is an optimised response to the contaminants present in microcosms.
authors.affiliation: Department of Genetics, Institute of Molecular and Cell Biology, University of Tartu, Riia 23, 51010 Tartu, Estonia. eheinaru@ebc.ee
authors.forename: Eeva
authors.initials: E
authors.lastname: Heinaru
authors.forename: Merike
authors.initials: M
authors.lastname: Merimaa
authors.forename: Signe
authors.initials: S
authors.lastname: Viggor
authors.forename: Merit
authors.initials: M
authors.lastname: Lehiste
authors.forename: Ivo
authors.initials: I
authors.lastname: Leito
authors.forename: Jaak
authors.initials: J
authors.lastname: Truu
authors.forename: Ain
authors.initials: A
authors.lastname: Heinaru
mesh_terms: D001673:Biodegradation, Environmental; D003470:Culture Media; D004269:DNA, Bacterial / Q000032:analysis; D004275:DNA, Ribosomal / Q000032:analysis; D017753:Ecosystem; D004586:Electrophoresis / Q000379:methods; D006899:Mixed Function Oxygenases / Q000235:genetics; D008969:Molecular Sequence Data; D010578:Petroleum / Q000378:metabolism*; D010636:Phenols / Q000378:metabolism*; D010933:Plankton / Q000145:classification / Q000235:genetics / Q000254:growth & development / Q000378:metabolism; D016133:Polymerase Chain Reaction; D011549:Pseudomonas / Q000145:classification / Q000235:genetics / Q000254:growth & development* / Q000378:metabolism; D011551:Pseudomonas fluorescens / Q000145:classification / Q000235:genetics / Q000254:growth & development* / Q000378:metabolism; D012336:RNA, Ribosomal, 16S / Q000235:genetics
chemical_list: D003470:Culture Media; D004269:DNA, Bacterial; D004275:DNA, Ribosomal; D010578:Petroleum; D010636:Phenols; D012336:RNA, Ribosomal, 16S; D006899:Mixed Function Oxygenases; C022336:phenol 2-monooxygenase