Mitochondrial cytochrome b mRNA editing in dinoflagellates: possible ecological and evolutionary associations?
To verify the hypothesis that mt mRNA editing is widespread in dinoflagellates, we analyzed cytochrome b (cob) mRNA editing for six species representing distinct ecotypes and taxonomic classes of Dinophyceae. Editing is detected in all, which is similar to the three other species studied previously in that edited sites appear to aggregate in four clusters and occur predominantly at first and second positions of codons (93%), overwhelmingly involving A --> G, U --> C, or C --> U substitutions with a smaller number of G --> C, G --> A changes. Comparative analyses on editing characteristics reveal interesting trends related to phylogenetic relatedness and ecological features. Editing density (percentage of nucleotide that is affected by editing) increases from early to derived lineages. Higher editing densities also map to red tide-forming lineages. Furthermore, similarity of location of edited codons (LOE) and the type of nucleotide changes (TOE) in different lineages mirror the taxonomic affinity of the lineages. Phylogenetic trees constructed from LOE and TOE resemble those inferred from cob sequences. The results bolster our earlier hypothesis that cob editing is widespread in dinoflagellates and suggest that density, location, and type of editing may bear yet-to-be-defined evolutionary and ecological significance.
Zhang
Huan
H
Department of Marine Sciences, University of Connecticut, Groton, 06340, USA.
Lin
Senjie
S
D000818:Animals; D001483:Base Sequence; D003001:Cloning, Molecular; D045303:Cytochromes b / Q000235:genetics* / Q000378:metabolism; D004141:Dinoflagellida / Q000145:classification / Q000201:enzymology* / Q000235:genetics; D017753:Ecosystem; D019143:Evolution, Molecular; D008928:Mitochondria / Q000201:enzymology; D008969:Molecular Sequence Data; D010802:Phylogeny; D017393:RNA Editing; D012333:RNA, Messenger / Q000235:genetics*; D000077278:RNA, Mitochondrial; D017422:Sequence Analysis, DNA
D012333:RNA, Messenger; D000077278:RNA, Mitochondrial; C029305:mitochondrial messenger RNA; D045303:Cytochromes b