title: Parastrombidinopsis shimi n. gen., n. sp. (Ciliophora: Choreotrichia) from the coastal waters of Korea: morphology and small subunit ribosomal DNA sequence.
abstract: The planktonic ciliate Parastrombidinopsis shimi n. gen., n. sp. is described from both living cells and quantitative protargol-stained (QPS) preparations and the sequence of the small subunit rDNA (SSU rDNA) is reported. This species is almost oval when the cells are alive; when stained, it is cylindrical for the upper two-fifths, half-bowl shaped for the middle two-fifths, and narrow rodshaped for the lower one-fifth. The ranges (and mean +/- standard deviation, n = 20) of cell length, cell width, and oral diameter of living cells were 112-221 microm (168 +/- 39), 88-176 microm (121 +/- 30), and 53-110 microm (80 +/- 14), respectively, while those of the QPS-stained specimens (n = 54) were 88-225 microm (162 +/- 29), 55-163 microm (102 +/- 19), and 53-98 microm (69 +/- 9), respectively. Thirty-six to 48 external oral polykinetids had cilia 25-40 microm long. However, unlike Strombidinopsis species sensu stricto, P. shimi has an external oral polykinetid zone that is an open circle. This species has two shorter polykinetids associated with the end of the oral polykinetid zone, deep in the oral cavity. Like Strombidinopsis species in the subclass Choreotrichia, 36-50 somatic kineties were equally spaced around the cell body and extended from the oral to the posterior regions with 68-105 dikinetids per kinety. Both kinetosomes of each kinetid bore cilia 3-10 microm long. Parastrombidinopsis shimi had 2 (1-4) ovoid macronuclei of 20-82 x 15-32 microm. When properly aligned, the sequence of the SSU rDNA of P. shimi (GenBank Accession No. AJ786648) was approximately 5% different from that of Strobilidium caudatum and 6% different from that of two Strombidinopsis species. Based both on morphology and gene sequence divergence, we establish this is as a new species in a new genus belonging to the family Strombidinopsidae.
authors.affiliation: School of Earth and Environmental Science, College of Natural Sciences, Seoul National University, 151-747, Republic of Korea.
authors.forename: Jae Seong
authors.initials: JS
authors.lastname: Kim
authors.forename: Hae Jin
authors.initials: HJ
authors.lastname: Jeong
authors.forename: Michaela C
authors.initials: MC
authors.lastname: Strüeder-Kypke
authors.forename: Denis H
authors.initials: DH
authors.lastname: Lynn
authors.forename: Sanghee
authors.initials: S
authors.lastname: Kim
authors.forename: Jong Hyeok
authors.initials: JH
authors.lastname: Kim
authors.forename: Seung Hyeon
authors.initials: SH
authors.lastname: Lee
mesh_terms: D000818:Animals; D016798:Ciliophora / Q000145:classification* / Q000235:genetics / Q000648:ultrastructure*; D016054:DNA, Protozoan / Q000032:analysis; D004275:DNA, Ribosomal / Q000032:analysis*; D007723:Korea; D008969:Molecular Sequence Data; D010802:Phylogeny; D012623:Seawater / Q000469:parasitology*; D017422:Sequence Analysis, DNA
chemical_list: D016054:DNA, Protozoan; D004275:DNA, Ribosomal