title: [Optical biosensor study and molecular modeling of interactions between cytochrome P450cam and cytochrome b5].
abstract: The formation of complexes of cytochrome P450cam (P450cam) with full-length cytochrome b5 (d-b5) and its tryptic water-soluble fragment (t-b5) was analyzed using a two-channel IAsys+ optical biosensor. It was found that t-b5 can form complexes with P450cam, while d-b5 does not interact with P450cam. The involvement of amine groups of P450cam in the complex formation was demonstrated. The temperature dependence of t-b5(im)/P450cam complex formation was measured. The association rate constant (k(on)) increased with temperature, while the dissociation rate constant (k(off)) practically remained unchanged. It was concluded that hydrophobic interactions play a key role in the complex formation, while electrostatic interactions are significant for complex stabilization. Based on temperature dependence the activation energy, enthalpy and entropy of complex formation were calculated. It was shown that the entropy component plays a key role in t-b5(im)/P450cam interaction. Computer modeling of P450cam/t-b5 and P450cam/d-b5 interactions was carried out. Using the method of molecular docking some hypotheses of protein-protein complexes were advanced and the best ones were selected based on geometric complementarity, calculated binding energy and probability of electron tunneling between proteins. The computer modeling has shown that only P450cam and t-b5 can form the stable complex. These results are in good agreement with the experimental data obtained with the optical biosensor.
authors.forename: N I
authors.initials: NI
authors.lastname: Rachenkova
authors.forename: Iu D
authors.initials: IuD
authors.lastname: Ivanov
authors.forename: V S
authors.initials: VS
authors.lastname: Skvortsov
authors.forename: A S
authors.initials: AS
authors.lastname: Ivanov
authors.forename: A A
authors.initials: AA
authors.lastname: Molnar
authors.forename: G
authors.initials: G
authors.lastname: Hui Bon Hoa
authors.forename: A I
authors.initials: AI
authors.lastname: Archakov
mesh_terms: D000595:Amino Acid Sequence; D015374:Biosensing Techniques; D019475:Camphor 5-Monooxygenase / Q000737:chemistry*; D003198:Computer Simulation; D015786:Cytochromes b5 / Q000737:chemistry*; D019277:Entropy; D057927:Hydrophobic and Hydrophilic Interactions; D008958:Models, Molecular; D008969:Molecular Sequence Data; D055095:Optics and Photonics; D025941:Protein Interaction Mapping; D013696:Temperature
chemical_list: D015786:Cytochromes b5; D019475:Camphor 5-Monooxygenase