Molecular genetic analysis of two functional candidate genes in the autosomal recessive retinitis pigmentosa, RP25, locus.
OBJECTIVE
To identify the disease gene in five Spanish families with autosomal recessive retinitis pigmentosa (arRP) linked to the RP25 locus. Two candidate genes, EEF1A1 and IMPG1, were selected from the region between D6S280 and D6S1644 markers where the families are linked. The genes were selected as good candidates on the basis of their function, tissue expression pattern, and/or genetic data.


METHODS
A molecular genetic study was performed on DNA extracted from one parent and one affected member of each studied family. The coding exons, splice sites, and the 5' UTR of the genes were amplified by polymerase chain reaction (PCR). For mutation detection, direct sequence analysis was performed using the ABI 3100 automated sequencer. Segregation of an IMPG1 single nucleotide polymorphism (SNP) in all the families studied was analyzed by restriction enzyme digest of the amplified gene fragments.


RESULTS
In total, 15 SNPs were identified of which 7 were novel. Of the identified SNPs, one was insertion, two were deletions, five were intronic, six were missense, and one was located in the 5' UTR. These changes, however, were also identified in unaffected members of the families and/or 50 control Caucasians. The examined known IMPG1 SNP was not segregating with the disease phenotype but was correlating with the genetic data in all families studied.


CONCLUSIONS
Our results indicate that neither EEF1A1 nor IMPG1 could be responsible for RP25 in the studied families due to absence of any pathogenic variants. However, it is important to notice that the methodology used in this study cannot detect larger deletions that lie outside the screened regions or primer site mutations that exist in the heterozygous state. A role of both genes in other inherited forms of RP and/or retinal degenerations needs to be elucidated.
Abd El-Aziz
Mai M
MM
Department of Ophthalmology, Tanta University Hospital, Tanta, Egypt. m.saad@ucl.ac.uk
El-Ashry
Mohamed F
MF
Barragan
Isabel
I
Marcos
Irene
I
Borrego
Salud
S
Antiñolo
Guillermo
G
Bhattacharya
Shomi S
SS
D002874:Chromosome Mapping; D003241:Consanguinity; D004252:DNA Mutational Analysis; D016326:Extracellular Matrix Proteins / Q000235:genetics*; D005136:Eye Proteins / Q000235:genetics*; D005260:Female; D005808:Genes, Recessive; D005819:Genetic Markers; D006801:Humans; D008297:Male; D008967:Molecular Biology; D009154:Mutation; D015513:Oncogene Proteins / Q000235:genetics*; D010375:Pedigree; D020648:Peptide Elongation Factor 1; D016133:Polymerase Chain Reaction; D020641:Polymorphism, Single Nucleotide; D011509:Proteoglycans / Q000235:genetics*; D012174:Retinitis Pigmentosa / Q000235:genetics*
C094814:EEF1A1 protein, human; D016326:Extracellular Matrix Proteins; D005136:Eye Proteins; D005819:Genetic Markers; C486428:IMPG1 protein, human; D015513:Oncogene Proteins; D020648:Peptide Elongation Factor 1; D011509:Proteoglycans