Automated detection of elementary calcium release events using the á trous wavelet transform.
We developed an algorithm for the automated detection and analysis of elementary Ca2+ release events (ECRE) based on the two-dimensional nondecimated wavelet transform. The transform is computed with the "à trous" algorithm using the cubic B-spline as the basis function and yields a multiresolution analysis of the image. This transform allows for highly efficient noise reduction while preserving signal amplitudes. ECRE detection is performed at the wavelet levels, thus using the whole spectral information contained in the image. The algorithm was tested on synthetic data at different noise levels as well as on experimental data of ECRE. The noise dependence of the statistical properties of the algorithm (detection sensitivity and reliability) was determined from synthetic data and detection parameters were selected to optimize the detection of experimental ECRE. The wavelet-based method shows considerably higher detection sensitivity and less false-positive counts than previously employed methods. It allows a more efficient detection of elementary Ca2+ release events than conventional methods, in particular in the presence of elevated background noise levels. The subsequent analysis of the morphological parameters of ECRE is reliably reproduced by the analysis procedure that is applied to the median filtered raw data. Testing the algorithm more rigorously showed that event parameter histograms (amplitude, rise time, full duration at half-maximum, and full width at half-maximum) were faithfully extracted from synthetic, "in-focus" and "out-of-focus" line scan sparks. Most importantly, ECRE obtained with laser scanning confocal microscopy of chemically skinned mammalian skeletal muscle fibers could be analyzed automatically to reproducibly establish event parameter histograms. In summary, our method provides a new valuable tool for highly reliable automated detection of ECRE in muscle but can also be adapted to other preparations.
v Wegner
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Institute of Physiology and Pathophysiology, Medical Biophysics, University of Heidelberg, INF 326, D-69120 Heidelberg, Germany.
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Fink
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D000465:Algorithms; D000818:Animals; D001185:Artificial Intelligence; D002118:Calcium / Q000378:metabolism; D020013:Calcium Signaling / Q000502:physiology*; D002478:Cells, Cultured; D007090:Image Interpretation, Computer-Assisted / Q000379:methods*; D051379:Mice; D018613:Microscopy, Confocal / Q000379:methods*; D008856:Microscopy, Fluorescence / Q000379:methods*; D018485:Muscle Fibers, Skeletal / Q000166:cytology* / Q000502:physiology*; D010363:Pattern Recognition, Automated / Q000379:methods*
D002118:Calcium