title: CpG methylation at the USF-binding site is important for the liver-specific transcription of the chipmunk HP-27 gene.
abstract: The chipmunk hibernation-specific HP-27 gene is expressed specifically in the liver and has a CpG-poor promoter. To reveal how the liver-specific transcription of the HP-27 gene is regulated, we performed yeast one-hybrid screening of a chipmunk liver cDNA library. A 5'-flanking sequence of the HP-27 gene, extending from -170 to -140 and containing an E-box (5'-CACGTG-3'), is essential for the liver-specific transcription of HP-27. We used this sequence as bait and found that a ubiquitously expressed transcription factor, USF (upstream stimulatory factor), bound to the E-box. In COS-7 cells, USF activated transcription from the HP-27 gene promoter. We then used bisulphite genomic sequencing to analyse the methylation status of the four CpG dinucleotides that lie in the 5'-flanking sequence of the HP-27 gene up to -450, to investigate how the ubiquitously expressed USF activates transcription of the HP-27 gene only in the liver, while its transcription is repressed elsewhere. The only difference in methylation in the tissues tested was in the CpG dinucleotide in the USF-binding site, which was hypomethylated in the liver, but highly methylated in the kidney and heart. The specific methylation of the CpG dinucleotide at the USF-binding site impeded both the binding of USF and its transcriptional activation of the HP-27 gene. Chromatin immunoprecipitation using anti-USF antibodies revealed that USF bound to the HP-27 gene promoter in the liver, but not in the kidney or heart. Thus CpG methylation at the USF-binding site functions in establishing and maintaining tissue-specific transcription from the CpG-poor HP-27 gene promoter.
authors.affiliation: Department of Biosciences, School of Science, Kitasato University, 1-15-1 Kitasato, Sagamihara, Kanagawa 228-8555, Japan.
authors.forename: Gen
authors.initials: G
authors.lastname: Fujii
authors.forename: Yuki
authors.initials: Y
authors.lastname: Nakamura
authors.forename: Daisuke
authors.initials: D
authors.lastname: Tsukamoto
authors.forename: Michihiko
authors.initials: M
authors.lastname: Ito
authors.forename: Tadayoshi
authors.initials: T
authors.lastname: Shiba
authors.forename: Nobuhiko
authors.initials: N
authors.lastname: Takamatsu
mesh_terms: D000818:Animals; D001665:Binding Sites / Q000235:genetics; D001798:Blood Proteins / Q000235:genetics*; D019556:COS Cells; D002478:Cells, Cultured; D002522:Chlorocebus aethiops; D018899:CpG Islands / Q000235:genetics*; D019175:DNA Methylation; D004268:DNA-Binding Proteins / Q000378:metabolism; D005091:Exons / Q000235:genetics; D008099:Liver / Q000378:metabolism*; D009928:Organ Specificity; D011401:Promoter Regions, Genetic / Q000235:genetics; D020218:Response Elements / Q000235:genetics; D012589:Sciuridae / Q000235:genetics*; D014158:Transcription, Genetic / Q000235:genetics*; D051720:Upstream Stimulatory Factors / Q000378:metabolism*
chemical_list: D001798:Blood Proteins; D004268:DNA-Binding Proteins; C081700:HP-27 protein, Tamias asiaticus; D051720:Upstream Stimulatory Factors