Genetic association analysis of human longevity in cohort studies of elderly subjects: an example of the PON1 gene in the Danish 1905 birth cohort.
Although the case-control or the cross-sectional design has been popular in genetic association studies of human longevity, such a design is prone to false positive results due to sampling bias and a potential secular trend in gene-environment interactions. To avoid these problems, the cohort or follow-up study design has been recommended. With the observed individual survival information, the Cox regression model has been used for single-locus data analysis. In this article, we present a novel survival analysis model that combines population survival with individual genotype and phenotype information in assessing the genetic association with human longevity in cohort studies. By monitoring the changes in the observed genotype frequencies over the follow-up period in a birth cohort, we are able to assess the effects of the genotypes and/or haplotypes on individual survival. With the estimated parameters, genotype- and/or haplotype-specific survival and hazard functions can be calculated without any parametric assumption on the survival distribution. In addition, our model estimates haplotype frequencies in a birth cohort over the follow-up time, which is not observable in the multilocus genotype data. A computer simulation study was conducted to specifically assess the performance and power of our haplotype-based approach for given risk and frequency parameters under different sample sizes. Application of our method to paraoxonase 1 genotype data detected a haplotype that significantly reduces carriers' hazard of death and thus reveals and stresses the important role of genetic variation in maintaining human survival at advanced ages.
Tan
Qihua
Q
Department of Clinical Biochemistry and Genetics, Odense University Hospital, DK-5000 Odense, Denmark. qihua.tan@ouh.fyns-amt.dk
Christiansen
Lene
L
Bathum
Lise
L
Li
Shuxia
S
Kruse
Torben A
TA
Christensen
Kaare
K
D000367:Age Factors; D000369:Aged, 80 and over; D043303:Aryldialkylphosphatase / Q000235:genetics*; D015331:Cohort Studies; D003198:Computer Simulation; D003718:Denmark; D005500:Follow-Up Studies; D006580:Genetic Carrier Screening; D006239:Haplotypes; D006801:Humans; D008136:Longevity / Q000235:genetics*; D008957:Models, Genetic; D016019:Survival Analysis
D043303:Aryldialkylphosphatase; C468406:PON1 protein, human