title: Characterization of mutations in HIV type 1 isolates from 144 Cambodian recently infected patients and pregnant women naive to antiretroviral drugs.
abstract: A baseline study has been conducted to determine the polymorphism of reverse transcriptase, protease, and envelope genes of HIV-1 isolates from 146 antiretroviral drug-naive Cambodian patients including 22 seroconverters and 124 pregnant women having been diagnosed HIV positive for less than 1 year. Amplification of at least one gene was successful for 144 isolates. All three genes were obtained for 136 isolates. Subtyping showed that CRF01_AE was predominant (130 cases). According to the ANRS September 2004 list, polymorphism substitutions (>50% versus the subtype B consensus) of CRF01_AE at drug resistance positions were observed only in protease: I13V (81%), E35D (87%), M36I (100%), R41K (96%), and H69K (100%). Two strains bore one major resistance mutation to PIs: M46I and N88D. Five other strains carried drug resistance mutations to RTIs: K70R (one strain), V75M (three strains), and K101E (one strain). Of the isolates 4.9% had drug resistance mutations to antiretroviral drugs.
authors.affiliation: Institut Pasteur du Cambodge, BP983, Phnom Penh, Cambodia.
authors.forename: Nary
authors.initials: N
authors.lastname: Ly
authors.forename: Patricia
authors.initials: P
authors.lastname: Recordon-Pinson
authors.forename: Viseth
authors.initials: V
authors.lastname: Phoung
authors.forename: Chanthan
authors.initials: C
authors.lastname: Srey
authors.forename: Leang Sim
authors.initials: LS
authors.lastname: Kruy
authors.forename: Kanal
authors.initials: K
authors.lastname: Koum
authors.forename: Vannarith
authors.initials: V
authors.lastname: Chhum
authors.forename: Philippe
authors.initials: P
authors.lastname: Glaziou
authors.forename: Herve J
authors.initials: HJ
authors.lastname: Fleury
authors.forename: Jean-Marc
authors.initials: JM
authors.lastname: Reynes
mesh_terms: D000595:Amino Acid Sequence; D019943:Amino Acid Substitution / Q000235:genetics; D002160:Cambodia; D024882:Drug Resistance, Viral / Q000235:genetics; D005260:Female; D015752:Genes, env; D015658:HIV Infections / Q000821:virology*; D016333:HIV Protease / Q000235:genetics; D054303:HIV Reverse Transcriptase / Q000235:genetics; D015497:HIV-1 / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification; D006801:Humans; D008969:Molecular Sequence Data; D009154:Mutation; D011110:Polymorphism, Genetic; D011247:Pregnancy; D011251:Pregnancy Complications, Infectious / Q000821:virology*; D011995:Recombination, Genetic; D016415:Sequence Alignment; D017422:Sequence Analysis, DNA
chemical_list: D054303:HIV Reverse Transcriptase; D016333:HIV Protease