title: The UCSC Genome Browser Database: update 2006.
abstract: The University of California Santa Cruz Genome Browser Database (GBD) contains sequence and annotation data for the genomes of about a dozen vertebrate species and several major model organisms. Genome annotations typically include assembly data, sequence composition, genes and gene predictions, mRNA and expressed sequence tag evidence, comparative genomics, regulation, expression and variation data. The database is optimized to support fast interactive performance with web tools that provide powerful visualization and querying capabilities for mining the data. The Genome Browser displays a wide variety of annotations at all scales from single nucleotide level up to a full chromosome. The Table Browser provides direct access to the database tables and sequence data, enabling complex queries on genome-wide datasets. The Proteome Browser graphically displays protein properties. The Gene Sorter allows filtering and comparison of genes by several metrics including expression data and several gene properties. BLAT and In Silico PCR search for sequences in entire genomes in seconds. These tools are highly integrated and provide many hyperlinks to other databases and websites. The GBD, browsing tools, downloadable data files and links to documentation and other information can be found at http://genome.ucsc.edu/.
authors.affiliation: Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA. angie@soe.ucsc.edu
authors.forename: A S
authors.initials: AS
authors.lastname: Hinrichs
authors.forename: D
authors.initials: D
authors.lastname: Karolchik
authors.forename: R
authors.initials: R
authors.lastname: Baertsch
authors.forename: G P
authors.initials: GP
authors.lastname: Barber
authors.forename: G
authors.initials: G
authors.lastname: Bejerano
authors.forename: H
authors.initials: H
authors.lastname: Clawson
authors.forename: M
authors.initials: M
authors.lastname: Diekhans
authors.forename: T S
authors.initials: TS
authors.lastname: Furey
authors.forename: R A
authors.initials: RA
authors.lastname: Harte
authors.forename: F
authors.initials: F
authors.lastname: Hsu
authors.forename: J
authors.initials: J
authors.lastname: Hillman-Jackson
authors.forename: R M
authors.initials: RM
authors.lastname: Kuhn
authors.forename: J S
authors.initials: JS
authors.lastname: Pedersen
authors.forename: A
authors.initials: A
authors.lastname: Pohl
authors.forename: B J
authors.initials: BJ
authors.lastname: Raney
authors.forename: K R
authors.initials: KR
authors.lastname: Rosenbloom
authors.forename: A
authors.initials: A
authors.lastname: Siepel
authors.forename: K E
authors.initials: KE
authors.lastname: Smith
authors.forename: C W
authors.initials: CW
authors.lastname: Sugnet
authors.forename: A
authors.initials: A
authors.lastname: Sultan-Qurraie
authors.forename: D J
authors.initials: DJ
authors.lastname: Thomas
authors.forename: H
authors.initials: H
authors.lastname: Trumbower
authors.forename: R J
authors.initials: RJ
authors.lastname: Weber
authors.forename: M
authors.initials: M
authors.lastname: Weirauch
authors.forename: A S
authors.initials: AS
authors.lastname: Zweig
authors.forename: D
authors.initials: D
authors.lastname: Haussler
authors.forename: W J
authors.initials: WJ
authors.lastname: Kent
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D002140:California; D003196:Computer Graphics; D030541:Databases, Genetic; D004285:Dogs; D015870:Gene Expression; D005796:Genes; D023281:Genomics; D006801:Humans; D020407:Internet; D051379:Mice; D020641:Polymorphism, Single Nucleotide; D011506:Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D040901:Proteomics; D051381:Rats; D016415:Sequence Alignment; D012984:Software; D014584:User-Computer Interface
chemical_list: D011506:Proteins