Genetic diversity of phenazine- and pyoluteorin-producing pseudomonads isolated from green pepper rhizosphere.
The genetic diversity among indigenous phenazine-1-carboxylic acid (PCA)-producing and pyoluteorin (Plt)-producing isolates of pseudomonads screened from green pepper rhizosphere was exploited in this study. A total of 48 bacterium isolates producing one or both of these antibiotics were screened from green pepper rhizosphere in diverse regions in China. Among these isolates, 45 could produce PCA, 3 could produce both PCA and Plt, and none could produce Plt only. Based on the restriction patterns of partial 16S and 16S-23S internal transcribed spacer (ITS) PCR fragments generated by enzyme HaeIII or HinfI, these isolates fell into 19 or 17 distinct groups respectively, indicating that there was a significant diversity among them. Polygenetic analysis of the partial 16S rDNA and 16S-23S ITS sequence from the representative in each group in the context of similar sequence from previously described bacterial species indicated that most isolates were closely related to the species of Pseudomonas fluorescens, P. putida, and Stenotrophomonas maltophilia. Some of these representatives of these isolates, then, are likely to be novel strains or species in these two genera.
Liu
Haiming
H
College of Life Science and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan RD, 200240, Shanghai, China.
Dong
Dexian
D
Peng
Huasong
H
Zhang
Xuehong
X
Xu
Yuquan
Y
D002212:Capsicum / Q000382:microbiology*; D002851:Chromatography, High Pressure Liquid; D014644:Genetic Variation; D008969:Molecular Sequence Data; D010619:Phenazines / Q000378:metabolism; D010636:Phenols / Q000378:metabolism*; D018517:Plant Roots / Q000382:microbiology; D012150:Polymorphism, Restriction Fragment Length; D011549:Pseudomonas / Q000145:classification / Q000235:genetics* / Q000378:metabolism; D011758:Pyrroles / Q000378:metabolism*; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012338:RNA, Ribosomal, 23S / Q000235:genetics; D017422:Sequence Analysis, DNA
D010619:Phenazines; D010636:Phenols; D011758:Pyrroles; D012336:RNA, Ribosomal, 16S; D012338:RNA, Ribosomal, 23S; C095503:pyoluteorin; C037165:1-phenazinecarboxylic acid