title: AOBase: a database for antisense oligonucleotides selection and design.
abstract: Antisense oligonucleotides (ODNs) technology is one of the important approaches for the sequence-specific knockdown of gene expression. ODNs have been used as research tools in the post-genome era, as well as new types of therapeutic agents. Since finding effective target sites within RNA is a hard work for antisense ODNs design, various experimental methods and computational approaches have been proposed. For better sharing of the experimented and published ODNs, valid and invalid ODNs reported in literatures are screened, collected and stored in AOBase. Till now, approximately 700 ODNs against 46 target mRNAs are contained in AOBase. Entries can be explored via TargetSearch and AOSearch web retrieval interfaces. AOBase can not only be useful in ODNs selection for gene function exploration, but also contribute to mining rules and developing algorithms for rational ODNs design. AOBase is freely accessible via http://www.bioit.org.cn/ao/aobase.
authors.affiliation: Beijing Institute of Radiation Medicine, Beijing 100850, China.
authors.forename: Xiaochen
authors.initials: X
authors.lastname: Bo
authors.forename: Shaoke
authors.initials: S
authors.lastname: Lou
authors.forename: Daochun
authors.initials: D
authors.lastname: Sun
authors.forename: Jing
authors.initials: J
authors.lastname: Yang
authors.forename: Shengqi
authors.initials: S
authors.lastname: Wang
mesh_terms: D000465:Algorithms; D030561:Databases, Nucleic Acid; D020407:Internet; D016376:Oligonucleotides, Antisense / Q000737:chemistry*; D012333:RNA, Messenger / Q000737:chemistry; D012984:Software; D014584:User-Computer Interface
chemical_list: D016376:Oligonucleotides, Antisense; D012333:RNA, Messenger