Water and ligand entry in myoglobin: assessing the speed and extent of heme pocket hydration after CO photodissociation.
A previously undescribed spectrokinetic assay for the entry of water into the distal heme pocket of wild-type and mutant myoglobins is presented. Nanosecond photolysis difference spectra were measured in the visible bands of sperm whale myoglobin as a function of distal pocket mutation and temperature. A small blue shift in the 560-nm deoxy absorption peak marked water entry several hundred nanoseconds after CO photodissociation. The observed rate suggests that water entry is rate-limited by the escape of internal dissociated CO. The heme pocket hydration and geminate recombination yields were found to be the primary factors controlling the overall bimolecular association rate constants for CO binding to the mutants studied. The kinetic analysis provides estimates of 84%, 60%, 40%, 0%, and 99% for the steady-state hydrations of wild-type, H64Q, H64A, H64L, and V68F deoxymyoglobin, respectively. The second-order rate constants for CO and H(2)O entry into the empty distal pocket of myoglobin are markedly different, 8 x 10(7) and 2 x 10(5) M(-1).s(-1), respectively, suggesting that hydrophobic partitioning of the apolar gas from the aqueous phase into the relatively apolar protein interior lowers the free energy barrier for CO entry.
Goldbeck
Robert A
RA
Department of Chemistry and Biochemistry, University of California-Santa Cruz, Santa Cruz, CA 95064, USA. goldbeck@chemistry.ucsc.edu
Bhaskaran
Shyam
S
Ortega
Cheri
C
Mendoza
Juan L
JL
Olson
John S
JS
Soman
Jayashree
J
Kliger
David S
DS
Esquerra
Raymond M
RM
D000818:Animals; D001665:Binding Sites; D002248:Carbon Monoxide / Q000737:chemistry*; D018360:Crystallography, X-Ray; D004583:Electrons; D006418:Heme / Q000737:chemistry*; D006639:Histidine / Q000737:chemistry; D007700:Kinetics; D008024:Ligands; D008956:Models, Chemical; D008958:Models, Molecular; D009154:Mutation; D009211:Myoglobin / Q000737:chemistry*; D011994:Recombinant Proteins / Q000737:chemistry; D013053:Spectrophotometry; D050661:Sperm Whale; D013696:Temperature; D013816:Thermodynamics; D013997:Time Factors; D014867:Water / Q000737:chemistry*; D014965:X-Rays
D008024:Ligands; D009211:Myoglobin; D011994:Recombinant Proteins; D014867:Water; D006418:Heme; D006639:Histidine; D002248:Carbon Monoxide