title: Ring-Toss: Capping highly exposed tyrosyl or tryptophyl residues in proteins with beta-cyclodextrin.
abstract: We have used UV difference spectroscopy and fluorescence spectroscopy to study the perturbation by beta-cyclodextrin of tyrosyl or tryptophyl residues located at each of the 10 variable consensus contact positions in the third domain of turkey ovomucoid. The goal was to monitor the accessibility of the side chain rings of these residues when located at these positions. The results indicated that the tyrosyl or tryptophyl rings are most highly exposed when located in the P1 position followed by the P4 position. It was possible to determine the association constants for beta-cyclodextrin binding at these positions. When located at the P2, P5, P6 and P3' positions, the rings of the tyrosyl or tryptophyl residues were exposed but less so than at the P1 or P4 positions. By contrast, when located at the P1', P2', P14' and P18' positions, the tyrosyl or tryptophyl residues were insufficiently exposed to be perturbed by beta-cyclodextrin, although they reacted positively to dimethyl sulfoxide solvent perturbation. These findings indicate that beta-cyclodextrin perturbation provides a convenient way to detect highly exposed tyrosyls or tryptophyls in proteins. Furthermore, we evaluated the ability of beta-cyclodextrin to inhibit the interaction of turkey ovomucoid third domain variants with different P1 residues. The results showed that the presence of beta-cyclodextrin had little effect on the association constant when the P1 residue was a glycyl residue, but greatly decreased the association constant when the P1 residue was a tyrosyl or tryptophyl residue. Thus, beta-cyclodextrin may be used to selectively modulate the interaction between proteinase inhibitors and their cognate enzymes.
authors.affiliation: Department of Chemistry, 560 Oval Drive, Purdue University, West Lafayette, IN 47907, USA. Zhengping.Yi@asu.edu
authors.forename: Zhengping
authors.initials: Z
authors.lastname: Yi
authors.forename: M A
authors.initials: MA
authors.lastname: Qasim
authors.forename: Sabiha
authors.initials: S
authors.lastname: Qasim
authors.forename: T L
authors.initials: TL
authors.lastname: Warrington
authors.forename: Michael
authors.initials: M
authors.lastname: Laskowski
mesh_terms: D000595:Amino Acid Sequence; D001426:Bacterial Proteins / Q000737:chemistry; D008969:Molecular Sequence Data; D010059:Ovomucin / Q000737:chemistry*; D012697:Serine Endopeptidases / Q000737:chemistry; D012997:Solvents; D013050:Spectrometry, Fluorescence; D013056:Spectrophotometry, Ultraviolet; D014364:Tryptophan / Q000737:chemistry*; D014443:Tyrosine / Q000737:chemistry*; D047392:beta-Cyclodextrins / Q000737:chemistry*
chemical_list: D001426:Bacterial Proteins; D012997:Solvents; D047392:beta-Cyclodextrins; D010059:Ovomucin; D014443:Tyrosine; D014364:Tryptophan; D012697:Serine Endopeptidases; C024983:streptogrisin A; C024984:streptogrisin B; C031215:betadex