title: Proteomic profiling of mature CD10+ B-cell lymphomas.
abstract: Proteomic profiling with protein-chip technology has been used successfully to discover biomarkers with potential clinical usefulness in several cancer types. Little proteomic study has been done in B-cell lymphomas. We determined whether the expression of a set of proteins by protein-chip technology coupled with new informatics tools could be used to build a model to molecularly classify B-cell lymphoma subgroups. We used surface-enhanced laser desorption/ionization time-of-flight mass spectrometry to analyze 18 CD10+ B-cell lymphomas, including 6 grade 1 (G1) follicular lymphomas (FLs), 7 grade 3 (G3) FLs, and 5 Burkitt lymphomas. We used 7 reactive follicular hyperplasia cases as a control group. By using SAX2 ProteinChip arrays (Ciphergen Biosystems, Fremont, CA), we found a unique protein expression profile for each type of lesion. Two-way hierarchical clustering analysis of these protein expression profiles differentiated reactive follicular hyperplasia, FL, and Burkitt lymphoma, with 5 major clusters of differentially expressed protein peaks. In addition, we identified histone H4 as a potential differentially expressed protein marker that seems to distinguish G1 from G3 FL. To our knowledge, this is the first proteomic study using protein-chip technology for molecular classification of B-cell lymphoma subtypes with clinical samples.
authors.affiliation: Department of Pathology, Oregon Health and Sciences University, Portland 97239, USA.
authors.forename: Guang
authors.initials: G
authors.lastname: Fan
authors.forename: Michael
authors.initials: M
authors.lastname: Molstad
authors.forename: Rita M
authors.initials: RM
authors.lastname: Braziel
authors.forename: Melissa
authors.initials: M
authors.lastname: Standley
authors.forename: James
authors.initials: J
authors.lastname: Huang
authors.forename: William
authors.initials: W
authors.lastname: Rodgers
authors.forename: Srinivasa
authors.initials: S
authors.lastname: Nagalla
mesh_terms: D014408:Biomarkers, Tumor / Q000032:analysis*; D006657:Histones / Q000378:metabolism; D006801:Humans; D016393:Lymphoma, B-Cell / Q000378:metabolism* / Q000473:pathology*; D015260:Neprilysin / Q000378:metabolism*; D040081:Protein Array Analysis; D040901:Proteomics / Q000379:methods; D019032:Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
chemical_list: D014408:Biomarkers, Tumor; D006657:Histones; D015260:Neprilysin