Homologous recombination in plants is organ specific.
In this paper we analysed the genome stability of various Arabidopsis thaliana plant organs using a transgenic recombination system. The system was based on two copies of non-functional GUS (lines #651 and #11) or LUC (line #15D8) reporter genes serving as a recombination substrate. Both reporter assays showed that recombination in flowers or stems were rare events. Most of the recombination sectors were found in leaves and roots, with leaves having over 2-fold greater number of the recombination events per single cell genome as compared to roots. The recombination events per single genome were 9.7-fold more frequent on the lateral half of the leaves than on the medial halves. This correlated with a 2.5-fold higher metabolic activity in the energy source (lateral) versus energy sink (medial) of leaves. Higher metabolic activity was paralleled by a higher anthocyanin production in lateral halves. The level of double strand break (DSB) occurrence was also different among plant organs; the highest level was observed in roots and the lowest in leaves. High level of DSBs strongly positively correlated with the activity of the key repair enzymes, AtKU70 and AtRAD51. The ratio of AtRAD51 to AtKU70 expression was the highest in leaves, supporting the more active involvement of homologous recombination pathway in the repair of DSBs in this organ. Western blot analysis confirmed the real time PCR expression data for AtKU70 gene.
Boyko
Alexander
A
Department of Biological Sciences, University of Lethbridge, Lethbridge, Alta., Canada T1K 3M4.
Filkowski
Jody
J
Hudson
Darryl
D
Kovalchuk
Igor
I
D000872:Anthocyanins / Q000096:biosynthesis; D017360:Arabidopsis / Q000033:anatomy & histology / Q000235:genetics; D029681:Arabidopsis Proteins / Q000235:genetics / Q000378:metabolism; D004247:DNA / Q000378:metabolism; D004249:DNA Damage / Q000235:genetics; D004268:DNA-Binding Proteins / Q000235:genetics / Q000378:metabolism; D020869:Gene Expression Profiling; D018506:Gene Expression Regulation, Plant; D018745:Genome, Plant / Q000235:genetics; D006861:Hydrogen Peroxide / Q000378:metabolism; D009928:Organ Specificity; D018515:Plant Leaves / Q000201:enzymology / Q000235:genetics / Q000378:metabolism; D010944:Plants / Q000033:anatomy & histology* / Q000235:genetics*; D030821:Plants, Genetically Modified; D051135:Rad51 Recombinase / Q000235:genetics / Q000378:metabolism; D011995:Recombination, Genetic / Q000235:genetics*; D012273:Ribulose-Bisphosphate Carboxylase / Q000378:metabolism; D017385:Sequence Homology
D000872:Anthocyanins; D029681:Arabidopsis Proteins; D004268:DNA-Binding Proteins; C463462:KU70 protein, Arabidopsis; D004247:DNA; D006861:Hydrogen Peroxide; C495146:ATRAD51 protein, Arabidopsis; D051135:Rad51 Recombinase; D012273:Ribulose-Bisphosphate Carboxylase