Real-time PCR detection of parapoxvirus DNA.
BACKGROUND
Detection of parapoxviruses is important in various animals as well as in humans as zoonotic infections. Reliable detection of parapoxviruses is fundamental for the exclusion of other rash-causing illnesses, for both veterinarians and medical practitioners. To date, however, no real-time PCR assay for the detection of parapoxviruses has been reported.


METHODS
A minor groove binder-based quantitative real-time PCR assay targeting the B2L gene of parapoxviruses was developed on the ABI Prism and the LightCycler platforms.


RESULTS
The real-time PCR assay successfully amplified DNA fragments from a total of 41 parapoxvirus strains and isolates representing the species orf virus, bovine papular stomatitis virus, pseudocowpoxvirus, and sealpoxvirus. Probit analysis gave a limit of detection of 4.7 copies per assay (95% confidence interval, 3.7-6.8 copies per reaction). Scabs contain a sufficient amount of parapoxvirus DNA and can therefore be used for PCR without any DNA preparation step. No cross-reactivity to human, bovine, or sheep genomic DNA or other DNA viruses, including orthopoxviruses, molluscum contagiosum viruses, and yaba-like disease viruses, was observed.


CONCLUSIONS
The presented assay is suitable for the detection of parapoxvirus infections in clinical material of human and animal origin.
Nitsche
Andreas
A
Robert Koch-Institut, Zentrum für Biologische Sicherheit 1, Berlin, Germany. nitschea@rki.de
Büttner
Mathias
M
Wilhelm
Sonja
S
Pauli
Georg
G
Meyer
Hermann
H
D000818:Animals; D004279:DNA, Viral / Q000032:analysis*; D006801:Humans; D018157:Parapoxvirus / Q000235:genetics / Q000302:isolation & purification*; D011213:Poxviridae Infections / Q000662:veterinary / Q000821:virology*; D020133:Reverse Transcriptase Polymerase Chain Reaction / Q000379:methods* / Q000662:veterinary; D012680:Sensitivity and Specificity
D004279:DNA, Viral