Modeling of hydrogen bonds in monohydrated 2,4-dithiothymine: an ab initio and AIM study.
Twelve tautomers of 2,4-dithiothymine are calculated at the MP2/6-31+G(d) level, and the most stable one is referred to the di-keto form (P12). Then four H-bonded complexes between P12 and water are optimized at the MP2/6-31+G(d) level of theory. The calculation of vibrational frequencies and natural bond orbital analysis are also carried out at the same level to investigate the hydrogen bonds involved in all the systems. Within all the four complexes, three types of hydrogen bonds are formed, in which the O-H...S and N-H...O bonds are the normal bonds with the X-H bond elongation and red shift of the corresponding stretch frequencies, while the C-H...O interaction is an improper, blue-shifting hydrogen bond accompanied with the contraction of the C-H bond and a blue shift of the C-H stretch frequency. The topological properties are investigated with the atoms-in-molecules (AIM) theory. The NMR chemical shielding for the isolated and the four monohydrated 2,4-dithiothymine are calculated using the "gauge-including atomic orbital" (GIAO) method. The 1H chemical shifts are influenced by the formation of hydrogen bonds.
He
Wendi
W
Faculty of Chemistry, Sichuan University, Chengdu, Sichuan 610064, PR China.
Xue
Ying
Y
Zhang
Hui
H
Tian
Anmin
A
Wong
Ning-Bew
NB
Wong
Ning-Bow
NB
D006860:Hydrogen Bonding; D009682:Magnetic Resonance Spectroscopy / Q000379:methods / Q000592:standards; D008956:Models, Chemical; D015394:Molecular Structure; D012015:Reference Standards; D013941:Thymine / Q000031:analogs & derivatives* / Q000737:chemistry; D014732:Vibration; D014867:Water / Q000737:chemistry
C512714:2,4-dithiothymine; D014867:Water; D013941:Thymine