Kramers model with a power-law friction kernel: dispersed kinetics and dynamic disorder of biochemical reactions.
Kramers' model for the rate of chemical reaction is generalized to explain the phenomena of dispersed kinetics and dynamic disorder in biochemical reactions, by incorporating the newly observed power-law friction kernel into the generalized Langevin equation for a one-dimensional reaction ordinate. This new model accounts for time scale overlap between conformational and chemical dynamics, and quantitatively describes the multi-exponential kinetics and memory effects of fluctuating rate constants, which have been revealed by recent single-molecule experiments.
Min
Wei
W
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138.
Xie
X Sunney
XS
D001703:Biophysics / Q000379:methods*; D003198:Computer Simulation; D017276:Friction; D007700:Kinetics; D008954:Models, Biological; D015233:Models, Statistical; D013997:Time Factors