New approaches to mechanism analysis for drug discovery using DNA microarray data combined with KeyMolnet.
We have developed a comprehensive information platform, named KeyMolnet, for drug discovery and life science research in the post-genome era. Using KeyMolnet, we show new approaches to research into the biological mechanism in DNA microarray analysis. Thanks to the DNA microarray technology, it is now possible to obtain very large quantities of gene expression data at a time. However, it is still difficult to extract meaningful information from such large quantities of data and to analyze the relationship between gene expression data and biological function. We therefore developed an advanced tool that can generate molecular networks upon demand, and beyond signaling "cross-talks," can connect them to physiological phenomena and medical and drug information. Here we show the methods of mechanism analysis using the DNA microarray data and KeyMolnet, as well as the possible mechanism of inducing apoptosis in the human promyelocytic leukemia cell line, HL-60, treated with 12-O-tetradecanoylphorbol 13-acetate (TPA), using the time series of gene expression data from DNA microarray experiments. KeyMolnet enables practical approaches to research into biological mechanisms, which in turn contribute to new discoveries in the medical, pharmaceutical and life sciences.
Sato
Hiromi
H
Institute of Medicinal Molecular Design, Inc. (IMMD), 5-24-5 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan. hiromis@immd.co.jp
Ishida
Seiichi
S
Toda
Kyoko
K
Matsuda
Rieko
R
Hayashi
Yuzuru
Y
Shigetaka
Makoto
M
Fukuda
Miki
M
Wakamatsu
Yohko
Y
Itai
Akiko
A
D017209:Apoptosis; D015195:Drug Design; D015870:Gene Expression / Q000187:drug effects; D018922:HL-60 Cells; D006801:Humans; D016247:Information Storage and Retrieval / Q000379:methods*; D020411:Oligonucleotide Array Sequence Analysis; D009862:Online Systems; D013755:Tetradecanoylphorbol Acetate / Q000494:pharmacology
D013755:Tetradecanoylphorbol Acetate