Development of a QSAR model for binding of tripeptides and tripeptidomimetics to the human intestinal di-/tripeptide transporter hPEPT1.
OBJECTIVE
The aim of this study was to develop a three-dimensional quantitative structure-activity relationship (QSAR) model for binding of tripeptides and tripeptidomimetics to hPEPT1 based on a series of 25 diverse tripeptides.


METHODS
VolSurf descriptors were generated and correlated with binding affinities by multivariate data analysis. The affinities for hPEPT1 of the tripeptides and tripeptidomimetics were determined experimentally by use of Caco-2 cell monolayers.


RESULTS
The Ki-values of the 25 tripeptides and tripeptidomimetics ranged from 0.15 to 25 mM and the structural diversity of the compounds was described by VolSurf descriptors. A QSAR model that correlated the VolSurf descriptors of the tripeptides with their experimental binding affinity for hPEPT1 was established.


CONCLUSIONS
Structural information on tripeptide properties influencing the binding to hPEPT1 was extracted from the QSAR model. This information may contribute to the drug design process of tripeptides and tripeptidomimetics where hPEPT1 is targeted as an absorptive transporter for improvement of intestinal absorption. To our knowledge, this is the first time a correlation between VolSurf descriptors and binding affinities for hPEPT1 has been reported.
Andersen
Rikke
R
Molecular Biopharmaceutics, The Danish University of Pharmaceutical Sciences, 2-Universitetsparken, DK-2100, Copenhagen, Denmark. ra@dfuni.dk
Jørgensen
Flemming Steen
FS
Olsen
Lars
L
Våbenø
Jon
J
Thorn
Karina
K
Nielsen
Carsten Uhd
CU
Steffansen
Bente
B
D018938:Caco-2 Cells; D015195:Drug Design; D006801:Humans; D007413:Intestinal Mucosa / Q000378:metabolism; D008954:Models, Biological; D000074011:Peptide Transporter 1; D010455:Peptides / Q000737:chemistry / Q000378:metabolism*; D011485:Protein Binding; D011487:Protein Conformation; D021281:Quantitative Structure-Activity Relationship; D027981:Symporters / Q000737:chemistry / Q000378:metabolism*
D000074011:Peptide Transporter 1; D010455:Peptides; C082186:SLC15A1 protein, human; D027981:Symporters