title: Isolation and characterization of cDNA encoding three dehydrins expressed during Coffea canephora (Robusta) grain development.
abstract: OBJECTIVE
  Dehydrins, or group 2 late embryogenic abundant proteins (LEA), are hydrophilic Gly-rich proteins that are induced in vegetative tissues in response to dehydration, elevated salt, and low temperature, in addition to being expressed during the late stages of seed maturation. With the aim of characterizing and studying genes involved in osmotic stress tolerance in coffee, several full-length cDNA-encoding dehydrins (CcDH1, CcDH2 and CcDH3) and an LEA protein (CcLEA1) from Coffea canephora (robusta) were isolated and characterized.
  
  
  METHODS
  The protein sequences deduced from the full-length cDNA were analysed to classify each dehydrin/LEA gene product and RT-PCR was used to determine the expression pattern of all four genes during pericarp and grain development, and in several other tissues of C. arabica and C. canephora. Primer-assisted genome walking was used to isolate the promoter region of the grain specific dehydrin gene (CcDH2).
  
  
  RESULTS
  The CcDH1 and CcDH2 genes encode Y(3)SK(2) dehydrins and the CcDH3 gene encodes an SK(3) dehydrin. CcDH1 and CcDH2 are expressed during the final stages of arabica and robusta grain development, but only the CcDH1 transcripts are clearly detected in other tissues such as pericarp, leaves and flowers. CcDH3 transcripts are also found in developing arabica and robusta grain, in addition to being detected in pericarp, stem, leaves and flowers. CcLEA1 transcripts were only detected during a brief period of grain development. Finally, over 1 kb of genomic sequence potentially encoding the entire grain-specific promoter region of the CcDH2 gene was isolated and characterized.
  
  
  CONCLUSIONS
  cDNA sequences for three dehydrins and one LEA protein have been obtained and the expression of the associated genes has been determined in various tissues of arabica and robusta coffees. Because induction of dehydrin gene expression is associated with osmotic stress in other plants, the dehydrin sequences presented here will facilitate future studies on the induction and control of the osmotic stress response in coffee. The unique expression pattern observed for CcLEA1, and the expression of a related gene in other plants, suggests that this gene may play an important role in the development of grain endosperm tissue. Genomic DNA containing the grain-specific CcDH2 promoter region has been cloned. Sequence analysis indicates that this promoter contains several putative regulatory sites implicated in the control of both seed- and osmotic stress-specific gene expression. Thus, the CcDH2 promoter is likely to be a useful tool for basic studies on the control of gene expression during both grain maturation and osmotic stress in coffee.
authors.affiliation: Nestlé Research Center, Tours 101, Avenue Gustave Eiffel, BP 49716, 37097 Tours Cedex 2, France.
authors.forename: Cécile
authors.initials: C
authors.lastname: Hinniger
authors.forename: Victoria
authors.initials: V
authors.lastname: Caillet
authors.forename: Franck
authors.initials: F
authors.lastname: Michoux
authors.forename: Mohamed
authors.initials: M
authors.lastname: Ben Amor
authors.forename: Steve
authors.initials: S
authors.lastname: Tanksley
authors.forename: Chenwei
authors.initials: C
authors.lastname: Lin
authors.forename: James
authors.initials: J
authors.lastname: McCarthy
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D040503:Coffea / Q000235:genetics* / Q000254:growth & development; D018076:DNA, Complementary / Q000737:chemistry / Q000302:isolation & purification; D018744:DNA, Plant / Q000737:chemistry / Q000302:isolation & purification; D008969:Molecular Sequence Data; D010940:Plant Proteins / Q000235:genetics* / Q000378:metabolism; D011401:Promoter Regions, Genetic; D020133:Reverse Transcriptase Polymerase Chain Reaction; D012639:Seeds / Q000254:growth & development*; D016415:Sequence Alignment; D017422:Sequence Analysis, DNA; D017386:Sequence Homology, Amino Acid; D014867:Water / Q000502:physiology
chemical_list: D018076:DNA, Complementary; D018744:DNA, Plant; D010940:Plant Proteins; C066246:late embryogenesis abundant protein, plant; D014867:Water