title: Mapping QTLs for popping ability in a popcorn x flint corn cross.
abstract: Popping expansion volume (PEV) in popcorn (Zea mays L.) is a distinct heritable character and defined as the ratio of the volume after popping to the volume before popping. PEV is quantitatively inherited and 3-4 genes/quantitative trait loci (QTLs) have been implicated. In the present study, we have dissected the quantitative PEV into two component traits, viz., flake volume (FV) and percent unpopped kernels (UPK), and mapped QTLs using SSR markers for all three traits with 194 F3 families derived from a popcorn (A-1-6) x flint corn (V273) cross. Heritability (broad sense) estimates for PEV, FV and UPK based on F3 mean bases were 0.72, 0.54 and 0.68, respectively. The QTL analyses for the three traits based on combined environment data were performed by composite interval mapping using QTL cartographer. Four QTLs were identified for PEV on chromosomes 1, 3, 8 and 10, which together explained 62% of the phenotypic variance (sigma2p). Four QTLs were found on chromosomes 1, 5, 9 and 10 for FV (explaining 44% of sigma2p) and five QTLs for UPK on chromosomes 1, 3, 4, 5 and 9 (explaining 57% of sigma2p). The relative efficiency estimates of marker-based selection in comparison to phenotypic selection for PEV (1.10), FV (1.22) and UPK (1.11) indicated that marker-based selection could be relatively more efficient. The QTL on chromosome 1S for PEV was found to be most significant, where QTLs for hard endosperm starch concentration had been detected earlier.
authors.affiliation: Vivekananda Institute of Hill Agriculture (ICAR), 263601, Almora, Uttaranchal, India. rbabu_icar@rediffmail.com
authors.forename: R
authors.initials: R
authors.lastname: Babu
authors.forename: S K
authors.initials: SK
authors.lastname: Nair
authors.forename: A
authors.initials: A
authors.lastname: Kumar
authors.forename: H S
authors.initials: HS
authors.lastname: Rao
authors.forename: P
authors.initials: P
authors.lastname: Verma
authors.forename: A
authors.initials: A
authors.lastname: Gahalain
authors.forename: I S
authors.initials: IS
authors.lastname: Singh
authors.forename: H S
authors.initials: HS
authors.lastname: Gupta
mesh_terms: D000483:Alleles; D002874:Chromosome Mapping; D032461:Chromosomes, Plant; D003433:Crosses, Genetic; D018744:DNA, Plant; D004777:Environment; D017343:Genes, Plant; D008040:Genetic Linkage; D005819:Genetic Markers; D014644:Genetic Variation; D006824:Hybridization, Genetic; D018895:Microsatellite Repeats; D012150:Polymorphism, Restriction Fragment Length; D040641:Quantitative Trait Loci; D012621:Seasons; D012641:Selection, Genetic; D013698:Templates, Genetic; D003313:Zea mays / Q000235:genetics*
chemical_list: D018744:DNA, Plant; D005819:Genetic Markers