title: Detection of the East and West African kdr mutation in Anopheles gambiae and Anopheles arabiensis from Uganda using a new assay based on FRET/Melt Curve analysis.
abstract: BACKGROUND
  Appropriate monitoring of vector resistance to insecticides is an integral component of planning and evaluation of insecticide use in malaria control programmes. The malaria vectors Anopheles gambiae s.s. and Anopheles arabiensis have developed resistance to pyrethroid insecticides as a result of a mechanism conferring reduced nervous system sensitivity, better known as knockdown resistance (kdr). In An. gambiae s.s. and An. arabiensis, two different substitutions in the para-type sodium channel, a L1014F substitution common in West Africa and a L1014S replacement found in Kenya, are linked with kdr. Two different allele-specific polymerase chain reactions (AS-PCR) are needed to detect these known kdr mutations. However, these AS-PCR assays rely on a single nucleotide polymorphism mismatch, which can result in unreliable results.
  
  
  METHODS
  Here, a new assay for the detection of knockdown resistance in An. gambiae s.s. and An. arabiensis based on Fluorescence Resonance Energy Transfer/Melt Curve analysis (FRET/MCA) is presented and compared with the existing assays.
  
  
  RESULTS
  The new FRET/MCA method has the important advantage of detecting both kdr alleles in one assay. Moreover, results show that the FRET/MCA is more reliable and more sensitive than the existing AS-PCR assays and is able to detect new genotypes. By using this technique, the presence of the East African kdr mutation (L1014S) is shown for the first time in An. arabiensis specimens from Uganda. In addition, a new kdr genotype is reported in An. gambiae s.s. from Uganda, where four An. gambiae s.s. mosquitoes possess both, the West (L1014F) and East (L1014S) African kdr allele, simultaneously.
  
  
  CONCLUSIONS
  The presence of both kdr mutations in the same geographical region shows the necessity of a reliable assay that enables to detect both mutations in one single assay. Hence, this new assay based on FRET/MCA will improve the screening of the kdr frequencies in An. gambiae s.s. and An. arabiensis.
authors.affiliation: Departement of Parasitology, Prins Leopold Institute of Tropical Medicine, Nationalestraat 155, B-2000 Antwerp, Belgium. kverhaeghen@itg.be
authors.forename: Katrijn
authors.initials: K
authors.lastname: Verhaeghen
authors.forename: Wim
authors.initials: W
authors.lastname: Van Bortel
authors.forename: Patricia
authors.initials: P
authors.lastname: Roelants
authors.forename: Thierry
authors.initials: T
authors.lastname: Backeljau
authors.forename: Marc
authors.initials: M
authors.lastname: Coosemans
mesh_terms: D000483:Alleles; D000818:Animals; D000852:Anopheles / Q000145:classification / Q000235:genetics*; D004351:Drug Resistance / Q000235:genetics*; D005838:Genotype; D007303:Insect Vectors / Q000145:classification / Q000235:genetics*; D025202:Molecular Diagnostic Techniques / Q000379:methods* / Q000592:standards; D009154:Mutation / Q000502:physiology; D016133:Polymerase Chain Reaction / Q000379:methods*; D011722:Pyrethrins; D015222:Sodium Channels / Q000235:genetics; D044366:Transition Temperature; D014454:Uganda
chemical_list: D011722:Pyrethrins; D015222:Sodium Channels