title: Quantitative PCR confirms purity of strain GT, a novel trichloroethene-to-ethene-respiring Dehalococcoides isolate.
abstract: A novel Dehalococcoides isolate capable of metabolic trichloroethene (TCE)-to-ethene reductive dechlorination was obtained from contaminated aquifer material. Growth studies and 16S rRNA gene-targeted analyses suggested culture purity; however, the careful quantitative analysis of Dehalococcoides 16S rRNA gene and chloroethene reductive dehalogenase gene (i.e., vcrA, tceA, and bvcA) copy numbers revealed that the culture consisted of multiple, distinct Dehalococcoides organisms. Subsequent transfers, along with quantitative PCR monitoring, yielded isolate GT, possessing only vcrA. These findings suggest that commonly used qualitative 16S rRNA gene-based procedures are insufficient to verify purity of Dehalococcoides cultures. Phylogenetic analysis revealed that strain GT is affiliated with the Pinellas group of the Dehalococcoides cluster and shares 100% 16S rRNA gene sequence identity with two other Dehalococcoides isolates, strain FL2 and strain CBDB1. The new isolate is distinct, as it respires the priority pollutants TCE, cis-1,2-dichloroethene (cis-DCE), 1,1-dichloroethene (1,1-DCE), and vinyl chloride (VC), thereby producing innocuous ethene and inorganic chloride. Strain GT dechlorinated TCE, cis-DCE, 1,1-DCE, and VC to ethene at rates up to 40, 41, 62, and 127 micromol liter-1 day-1, respectively, but failed to dechlorinate PCE. Hydrogen was the required electron donor, which was depleted to a consumption threshold concentration of 0.76+/-0.13 nM with VC as the electron acceptor. In contrast to the known TCE dechlorinating isolates, strain GT dechlorinated TCE to ethene with very little formation of chlorinated intermediates, suggesting that this type of organism avoids the commonly observed accumulation of cis-DCE and VC during TCE-to-ethene dechlorination.
authors.affiliation: Georgia Institute of Technology, School of Civil and Environmental Engineering, 311 Ferst Drive, 3228 ES&T Building, Atlanta, GA 30332-0512, USA.
authors.forename: Youlboong
authors.initials: Y
authors.lastname: Sung
authors.forename: Kirsti M
authors.initials: KM
authors.lastname: Ritalahti
authors.forename: Robert P
authors.initials: RP
authors.lastname: Apkarian
authors.forename: Frank E
authors.initials: FE
authors.lastname: Löffler
mesh_terms: D002713:Chlorine / Q000378:metabolism; D041862:Chloroflexi / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification* / Q000378:metabolism; D004275:DNA, Ribosomal / Q000032:analysis; D005030:Ethylenes / Q000378:metabolism*; D008969:Molecular Sequence Data; D010101:Oxygen Consumption; D016133:Polymerase Chain Reaction / Q000379:methods*; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA; D014241:Trichloroethylene / Q000378:metabolism*; D014874:Water Pollutants, Chemical / Q000378:metabolism
chemical_list: D004275:DNA, Ribosomal; D005030:Ethylenes; D012336:RNA, Ribosomal, 16S; D014874:Water Pollutants, Chemical; D014241:Trichloroethylene; D002713:Chlorine; C036216:ethylene