Structure and age of genetic diversity of dengue virus type 2 in Thailand.
Dengue virus type 2 (DENV-2) is a common viral infection and an important health concern in South-East Asia. To determine the molecular evolution of DENV-2 in Thailand, 105 isolates of the E (envelope) gene and 10 complete genomes sampled over a 27 year period were sequenced. Phylogenetic analysis of these data revealed that three genotypes of DENV-2 have circulated in Thailand, although, since 1991, only viruses assigned to Asian genotype I have been sampled from the population. A broader analysis of 35 complete genomes of DENV-2 revealed that most amino acids are subject to strong selective constraints, indicative of widespread purifying selection against deleterious mutations. This was further supported by an analysis of genome-wide substitution rates, which indicated that DENV-2 fixes approximately 10 mutations per genome per year, far lower than expected from its mutational dynamics. Finally, estimates of the age of DENV-2 were remarkably consistent among genes, indicating that the current genetic diversity in this virus probably arose within the last 120 years, concordant with the first determination of the aetiology of dengue disease.
Zhang
Chunlin
C
Department of Virology, US Army Medical Component-Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.
Mammen
Mammen P
MP
Department of Virology, US Army Medical Component-Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.
Chinnawirotpisan
Piyawan
P
Department of Virology, US Army Medical Component-Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.
Klungthong
Chonticha
C
Department of Virology, US Army Medical Component-Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.
Rodpradit
Prinyada
P
Department of Virology, US Army Medical Component-Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.
Nisalak
Ananda
A
Department of Virology, US Army Medical Component-Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.
Vaughn
David W
DW
Military Infectious Diseases Research Program, US Army Medical Research and Materiel Command, Fort Detrick, MD 21701, USA.
Nimmannitya
Suchitra
S
Queen Sirikit National Institute of Child Health, Bangkok, Thailand.
Kalayanarooj
Siripen
S
Queen Sirikit National Institute of Child Health, Bangkok, Thailand.
Holmes
Edward C
EC
Center for Infectious Disease Dynamics, Department of Biology, The Pennsylvania State University, Mueller Laboratory, University Park, PA 16802, USA.
D000293:Adolescent; D002648:Child; D002675:Child, Preschool; D003715:Dengue / Q000453:epidemiology* / Q000821:virology; D003716:Dengue Virus / Q000145:classification / Q000235:genetics*; D019143:Evolution, Molecular; D005260:Female; D014644:Genetic Variation; D006801:Humans; D007223:Infant; D008297:Male; D008969:Molecular Sequence Data; D009154:Mutation; D010802:Phylogeny; D012641:Selection, Genetic; D017422:Sequence Analysis, DNA; D013785:Thailand