title: New Escherichia coli outer membrane proteins identified through prediction and experimental verification.
abstract: Many new Escherichia coli outer membrane proteins have recently been identified by proteomics techniques. However, poorly expressed proteins and proteins expressed only under certain conditions may escape detection when wild-type cells are grown under standard conditions. Here, we have taken a complementary approach where candidate outer membrane proteins have been identified by bioinformatics prediction, cloned and overexpressed, and finally localized by cell fractionation experiments. Out of eight predicted outer membrane proteins, we have confirmed the outer membrane localization for five-YftM, YaiO, YfaZ, CsgF, and YliI--and also provide preliminary data indicating that a sixth--YfaL--may be an outer membrane autotransporter.
authors.affiliation: Department of Biochemistry and Biophysics, Stockholm University, SE-106 91 Stockholm, Sweden.
authors.forename: Paola
authors.initials: P
authors.lastname: Marani
authors.forename: Samuel
authors.initials: S
authors.lastname: Wagner
authors.forename: Louise
authors.initials: L
authors.lastname: Baars
authors.forename: Pierre
authors.initials: P
authors.lastname: Genevaux
authors.forename: Jan-Willem
authors.initials: JW
authors.lastname: de Gier
authors.forename: Ingmarie
authors.initials: I
authors.lastname: Nilsson
authors.forename: Rita
authors.initials: R
authors.lastname: Casadio
authors.forename: Gunnar
authors.initials: G
authors.lastname: von Heijne
mesh_terms: D001425:Bacterial Outer Membrane Proteins / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism*; D001426:Bacterial Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D002458:Cell Fractionation; D003001:Cloning, Molecular; D019295:Computational Biology / Q000379:methods*; D004926:Escherichia coli / Q000737:chemistry / Q000201:enzymology* / Q000235:genetics / Q000378:metabolism; D029968:Escherichia coli Proteins / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism*; D026901:Membrane Transport Proteins / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism*; D020543:Proteome / Q000737:chemistry / Q000235:genetics / Q000378:metabolism
chemical_list: D001425:Bacterial Outer Membrane Proteins; D001426:Bacterial Proteins; D029968:Escherichia coli Proteins; D026901:Membrane Transport Proteins; D020543:Proteome; C057842:SecB protein, Bacteria; C573499:YfaL protein, E coli