Identification of a novel VNTR polymorphism in C6orf37 and its association with colorectal cancer risk in Chinese population.
BACKGROUND
C6orf37 was a gene up-regulated in colorectal adenoma in our previous study. A variable region of C6orf37 sequence was found when we blasted its full sequence with NCBI nucleotide database.


METHODS
RT-PCR and sequencing were conducted to identify the variable region of C6orf37 as VNTR. DHPLC was applied to detect the VNTR genotypes in 122 colorectal carcinoma patients and 166 healthy controls.


RESULTS
A novel VNTR sequence found in C6orf37 second exon was composed of 15 base pair consensus sequence encoding 5-amino-acid (G-G-D-F-G). The repeat timePOST alleles contain three repeats (a), 4 repeats (b) and 5 repeats (c), respectively, which produced 3 homozygotes (a/a, b/b and c/c) and 3 heterozygotes (a/b, a/c and b/c). a, b, c allele frequencies were 0.145, 0.304, 0.551, respectively in Chinese population. Heterozygosity (H) was 0.583. Polymorphism information content (PIC) was 0.510. The distribution of genotypes and allele frequencies of the VNTR reached no significant difference between patients and healthy controls and there was no correlation between VNTR polymorphism and colorectal cancer clincopathological features.


CONCLUSIONS
A novel VNTR polymorphism in C6orf37 exists in Chinese population and is not associated with colorectal cancer risk.
Cui
Jing
J
Department of Pathology, School of Medicine, Zhejiang University, Yan-an Road 353, Hangzhou, 310031, China.
Wang
Wei
W
Lai
Mao-De
MD
Xu
En-Ping
EP
Lv
Bing-Jian
BJ
Lin
Jie
J
Ruan
Wen-Jing
WJ
Ma
Yu
Y
Yao
Chan
C
D000328:Adult; D000368:Aged; D044466:Asian People / Q000235:genetics*; D002851:Chromatography, High Pressure Liquid; D015179:Colorectal Neoplasms / Q000235:genetics* / Q000473:pathology; D005091:Exons / Q000235:genetics; D005260:Female; D020022:Genetic Predisposition to Disease / Q000235:genetics*; D005838:Genotype; D006801:Humans; D008297:Male; D008875:Middle Aged; D018598:Minisatellite Repeats / Q000235:genetics*; D008969:Molecular Sequence Data; D011110:Polymorphism, Genetic / Q000235:genetics*; D011062:Polynucleotide Adenylyltransferase; D011506:Proteins / Q000235:genetics*
D011506:Proteins; D011062:Polynucleotide Adenylyltransferase; C466099:TENT5A protein, human