First-principles calculations of protein circular dichroism in the far-ultraviolet and beyond.
Understanding the relationship between the amino acid sequence of a protein and its unique, compact three-dimensional structure is one of the grand challenges in molecular biophysics. One exciting approach to the protein-folding problem is fast time-resolved spectroscopy in the ultra-violet (UV). Time-resolved electronic circular dichroism (CD) spectroscopy offers resolution on a nanosecond (or faster) timescale, but does not provide the spatial resolution of techniques like X-ray crystallography or NMR. There is a need to underpin fast timescale spectroscopic studies of protein folding with a stronger theoretical foundation. We review some recent studies in this regard and briefly highlight how modern quantum chemical models of aromatic groups have improved the accuracy of calculations of protein CD spectra near-UV. On the other side of the far-UV, we describe calculations indicating that charge-transfer transitions are likely to be responsible for bands observed in the vacuum UV in protein CD.
Oakley
Mark T
MT
School of Chemistry, University of Nottingham, University Park, Nottingham NG7 2RD, UK.
Bulheller
Benjamin M
BM
Hirst
Jonathan D
JD
D024322:Amino Acids, Aromatic / Q000737:chemistry; D002942:Circular Dichroism / Q000379:methods*; D011506:Proteins / Q000032:analysis* / Q000737:chemistry; D011789:Quantum Theory; D013056:Spectrophotometry, Ultraviolet / Q000379:methods*
D024322:Amino Acids, Aromatic; D011506:Proteins