N-methylpurine DNA glycosylase and 8-oxoguanine dna glycosylase metabolize the antiviral nucleoside 2-bromo-5,6-dichloro-1-(beta-D-ribofuranosyl)benzimidazole.
The rapid in vivo degradation of the potent human cytomegalovirus inhibitor 2-bromo-5,6-dichloro-1-(beta-D-ribofuranosyl)benzimidazole (BDCRB) compared with a structural L-analog, maribavir (5,6-dichloro-2-(isopropylamino)-1-beta-L-ribofuranosyl-1H-benzimidazole), has been attributed to selective glycosidic bond cleavage. An enzyme responsible for this selective BDCRB degradation, however, has not been identified. Here, we report the identification of two enzymes, 8-oxoguanine DNA glycosylase (OGG1) and N-methylpurine DNA glycosylase (MPG), that catalyze N-glycosidic bond cleavage of BDCRB and its 2-chloro homolog, 2,5,6-trichloro-1-(beta-D-ribofuranosyl)benzimidazole, but not maribavir. To our knowledge, this is the first demonstration that free nucleosides are substrates of OGG1 and MPG. To understand how these enzymes might process BDCRB, docking and molecular dynamics simulations were performed with the native human OGG1 crystal coordinates. These studies showed that OGG1 was not able to bind a negative control, guanosine, yet BDCRB and maribavir were stabilized through interactions with various binding site residues, including Phe319, His270, Ser320, and Asn149. Only BDCRB, however, achieved orientations whereby its anomeric carbon, C1', could undergo nucleophilic attack by the putative catalytic residue, Lys249. Thus, in silico observations were in perfect agreement with experimental observations. These findings implicate DNA glycosylases in drug metabolism.
Lorenzi
Philip L
PL
Department of Pharmaceutical Sciences, College of Pharmacy, University of Michigan, Ann Arbor MI 48109-1065, USA.
Landowski
Christopher P
CP
Brancale
Andrea
A
Song
Xueqin
X
Townsend
Leroy B
LB
Drach
John C
JC
Amidon
Gordon L
GL
D000998:Antiviral Agents / Q000378:metabolism*; D001562:Benzimidazoles / Q000378:metabolism*; D018938:Caco-2 Cells; D003198:Computer Simulation; D045647:DNA Glycosylases / Q000096:biosynthesis / Q000235:genetics / Q000378:metabolism*; D020869:Gene Expression Profiling; D006801:Humans; D007422:Intestines / Q000201:enzymology; D008862:Microsomes, Liver / Q000201:enzymology / Q000378:metabolism*; D008958:Models, Molecular; D020411:Oligonucleotide Array Sequence Analysis; D011487:Protein Conformation; D012263:Ribonucleosides / Q000378:metabolism*; D013347:Subcellular Fractions / Q000201:enzymology / Q000378:metabolism*; D004004:Dichlororibofuranosylbenzimidazole / Q000031:analogs & derivatives
D000998:Antiviral Agents; D001562:Benzimidazoles; D045647:DNA Glycosylases; D012263:Ribonucleosides; C111642:2,5,6-trichloro-1-(ribofuranosyl)benzimidazole; C109864:2-bromo-5,6-dichloro-1-beta-D-ribofuranosyl benzimidazole; C479058:oxoguanine glycosylase 1, human; C076131:DNA-3-methyladenine glycosidase II; C400401:maribavir; D004004:Dichlororibofuranosylbenzimidazole