Error propagation across levels of organization: from chemical stability of ribosomal RNA to developmental stability.
My hypothesis integrates molecular and whole-organism levels of development. A physico-chemical property of nucleotides (their dipole moment), confers structural thermostability on double-stranded sequences, and decreases chemical stability of single-stranded sequences. According to this approach, low ribosomal RNA stability should decrease the precision of protein synthesis and whole-organism developmental stability. Indeed, substitution frequencies in pseudogenes are proportional to the subtraction of the dipole moment of the substituting nucleotide from that of the substituted one, and developmental instability, estimated by morphological fluctuating asymmetry (FA), correlates with mammal 12s rRNA base content of loop (but not stem) regions. In lizards, fit to the single-strand rationale of sequence chemical stability decreases with the level of poikilothermy of the investigated lizard family, suggesting interactions between changes in body temperature, ribosomal structure and developmental instability. Results confirm the hypothesis (less than for 12s rRNA) in: third codon positions of cytochrome B, probably because, unlike rRNAs, specific mRNAs affect only the protein they code; and 16s rRNA, apparently because its base composition is more affected by genome-wide mutational biases than that of 12s rRNA.
Seligmann
Hervé
H
Department of Ecology and Evolution, The University of Chicago, Chicago, IL 60637, USA. hselig1@yahoo.com
D000818:Animals; D016922:Cellular Senescence; D045303:Cytochromes b / Q000235:genetics; D004622:Embryo, Mammalian / Q000502:physiology; D004625:Embryo, Nonmammalian; D047108:Embryonic Development / Q000235:genetics; D008116:Lizards / Q000235:genetics; D008322:Mammals / Q000235:genetics*; D008957:Models, Genetic; D009154:Mutation; D014176:Protein Biosynthesis; D012335:RNA, Ribosomal / Q000378:metabolism*; D012336:RNA, Ribosomal, 16S / Q000378:metabolism
D012335:RNA, Ribosomal; D012336:RNA, Ribosomal, 16S; C075526:RNA, ribosomal, 12S; D045303:Cytochromes b