title: Transcriptional regulation of the sbeIIb genes in sorghum (Sorghum bicolor) and barley (Hordeum vulgare): importance of the barley sbeIIb second intron.
abstract: The transcriptional activity of the sorghum sbeIIb gene, encoding starch branching enzyme IIb, is seed specific, with expression in both the endosperm and the embryo. In comparison, expression of barley sbeIIb is confined to the endosperm, whereas that of barley sbeIIa occurs in endosperm, embryonic and vegetative tissues. It has been suggested that the second intron of barley sbeIIb may be instrumental in conferring endosperm-specific expression. Therefore, to further investigate the regulatory mechanisms of barley and sorghum sbe, we examined the tissue-specific activity of the sorghum sbe promoter in transient assays of green fluorescent protein (gfp) reporter constructs. We found that, when linked to the barley sbeIIb second intron, the sorghum sbeIIb promoter could not drive gfp transcription in sorghum or barley embryonic cells. Similar results were obtained for the barley sbeIIa promoter. Database searches showed that sequences homologous to the barley sbeIIb intron also exist in introns and flanking regions of some other grass genes. Deletion mutagenesis of the sorghum sbeIIb promoter identified the minimal promoters required for high- and low-level expression, respectively, but did not reveal any putative promoter elements crucial for expression. A sequence with similarity to the SURE element, implicated in sugar signaling, was located in the distal promoter region of sorghum sbeIIb, upstream of the minimal promoters. SURE elements are present in the proximal promoter regions of the sugar-regulated barley iso1 gene, and barley sbeIIb. In keeping in line with these observations, RNA-gel blot analyses demonstrated that expression of barley sbeIIb was sugar inducible, whereas that of sorghum sbeIIb was not.
authors.affiliation: Department of Plant Biology and Forest Genetics, The Swedish University of Agricultural Sciences, P.O. Box 7080, SE-75007 Uppsala, Sweden.
authors.forename: Joel
authors.initials: J
authors.lastname: Mutisya
authors.forename: Chuanxin
authors.initials: C
authors.lastname: Sun
authors.forename: Sara
authors.initials: S
authors.lastname: Palmqvist
authors.forename: Yona
authors.initials: Y
authors.lastname: Baguma
authors.forename: Benjamin
authors.initials: B
authors.lastname: Odhiambo
authors.forename: Christer
authors.initials: C
authors.lastname: Jansson
mesh_terms: D015061:1,4-alpha-Glucan Branching Enzyme / Q000235:genetics*; D001483:Base Sequence; D017353:Gene Deletion; D015971:Gene Expression Regulation, Enzymologic; D018506:Gene Expression Regulation, Plant; D001467:Hordeum / Q000201:enzymology / Q000235:genetics*; D007438:Introns / Q000235:genetics*; D008969:Molecular Sequence Data; D012639:Seeds / Q000378:metabolism; D045868:Sorghum / Q000201:enzymology / Q000235:genetics*; D014158:Transcription, Genetic
chemical_list: D015061:1,4-alpha-Glucan Branching Enzyme; C116400:starch-branching enzyme IIb