Effect of salt on the interactions of antimicrobial peptides with zwitterionic lipid bilayers.
The effect of salt on the binding of the antimicrobial peptide magainin to POPC lipid bilayers is studied by 40-50 ns molecular dynamics simulations of a POPC bilayer in the presence of different concentrations of Na+ and Cl- ions, corresponding to effective concentrations of 0, 100, 150, 200, 250 and 300 millimolar NaCl, with and without a single molecule of antimicrobial peptide magainin. Simulations without magainin showed that increasing salt concentration leads to the decrease in the area per lipid, a decrease in the head group tilt of the lipids, as well as increased order of lipid tails, in agreement with other recent simulations. Simulations with magainin show that peptide binding to the lipids is stronger at lower concentrations of salt. The peptides disorder the lipids in their immediate vicinity, but this effect is diminished as the salt concentration increases. Our studies indicate that while 50 ns simulations give information on peptide hydrogen bonding and lipid tail ordering that is insensitive to the initial peptide orientation, this run time is not sufficient to equilibrate the peptide position and orientation within the bilayer.
Kandasamy
Senthil K
SK
Chemical Engineering Department, University of Michigan, Ann Arbor, MI 48109, USA. senthilk@umich.edu <senthilk@umich.edu>
Larson
Ronald G
RG
D000595:Amino Acid Sequence; D000890:Anti-Infective Agents / Q000737:chemistry*; D008051:Lipid Bilayers; D008969:Molecular Sequence Data; D019906:Nuclear Magnetic Resonance, Biomolecular; D010455:Peptides / Q000737:chemistry*; D012965:Sodium Chloride / Q000737:chemistry*
D000890:Anti-Infective Agents; D008051:Lipid Bilayers; D010455:Peptides; D012965:Sodium Chloride