title: Phylogenetics and evolution of nematode-trapping fungi (Orbiliales) estimated from nuclear and protein coding genes.
abstract: The systematic classification of nematode-trapping fungi is redefined based on phylogenies inferred from sequence analyses of 28S rDNA, 5.8S rDNA and beta-tubulin genes. Molecular data were analyzed with maximum parsimony, maximum likelihood and Bayesian analysis. An emended generic concept of nematode-trapping fungi is provided. Arthrobotrys is characterized by adhesive networks, Dactylellina by adhesive knobs, and Drechslerella by constricting-rings. Phylogenetic placement of taxa characterized by stalked adhesive knobs and non-constricting rings also is confirmed in Dactylellina. Species that produce unstalked adhesive knobs that grow out to form loops are transferred from Gamsylella to Dactylellina, and those that produce unstalked adhesive knobs that grow out to form networks are transferred from Gamsylella to Arthrobotrys. Gamsylella as currently circumscribed cannot be treated as a valid genus. A hypothesis for the evolution of trapping-devices is presented based on multiple gene data and morphological studies. Predatory and nonpredatory fungi appear to have been derived from nonpredatory members of Orbilia. The adhesive knob is considered to be the ancestral type of trapping device from which constricting rings and networks were derived via two pathways. In the first pathway adhesive knobs retained their adhesive material forming simple two-dimension networks, eventually forming complex three-dimension networks. In the second pathway adhesive knobs lost their adhesive materials, with their ends meeting to form nonconstricting rings and they in turn formed constricting rings with three inflated-cells.
authors.affiliation: Laboratory for Conservation and Utilization of Bioresources, Yunnan University, Kunming, PR China.
authors.forename: Yan
authors.initials: Y
authors.lastname: Li
authors.forename: Kevin D
authors.initials: KD
authors.lastname: Hyde
authors.forename: Rajesh
authors.initials: R
authors.lastname: Jeewon
authors.forename: Lei
authors.initials: L
authors.lastname: Cai
authors.forename: Dhanasekaran
authors.initials: D
authors.lastname: Vijaykrishna
authors.forename: Keqin
authors.initials: K
authors.lastname: Zhang
mesh_terms: D000818:Animals; D001203:Ascomycota / Q000145:classification* / Q000235:genetics*; D005075:Biological Evolution; D004271:DNA, Fungal / Q000235:genetics; D004275:DNA, Ribosomal / Q000235:genetics*; D005656:Fungal Proteins / Q000235:genetics; D008969:Molecular Sequence Data; D009024:Morphogenesis; D009348:Nematoda / Q000382:microbiology; D010802:Phylogeny; D012339:RNA, Ribosomal, 28S / Q000235:genetics; D012340:RNA, Ribosomal, 5.8S / Q000235:genetics; D017422:Sequence Analysis, DNA; D017385:Sequence Homology; D014404:Tubulin / Q000235:genetics*
chemical_list: D004271:DNA, Fungal; D004275:DNA, Ribosomal; D005656:Fungal Proteins; D012339:RNA, Ribosomal, 28S; D012340:RNA, Ribosomal, 5.8S; D014404:Tubulin