title: Dominance of Lysobacter sp. in the rhizosphere of two coastal sand dune plant species, Calystegia soldanella and Elymus mollis.
abstract: Bacterial diversity in the rhizosphere of beach morning glory (Calystegia soldanella) and wild rye (Elymus mollis), two of the major plant species inhabiting the coastal sane dune in Tae-An, Korea, was studied by the analysis of community 16S rRNA gene clones. The amplified rDNA restriction analysis (ARDRA) of the clones using HaeIII exhibited significant differences in the community composition between the two plant species as well as regional differences, but also identified a specific ARDRA pattern that was most common among the clones regardless of plant species. Subsequent sequence analysis indicated that the pattern was that of Lysobacter spp., which is a member of the family Xanthomonadaceae, class Gamma proteobacteria. The Lysobacter clones comprised 50.6% of the clones derived from C. soldanella and 62.5% of those from E. mollis. Other minor patterns included those of Pseudomonas spp., species of Rhizobium, Chryseobacterium spp. and Pantoea spp. among C. soldanella clones, and Pseudomonas sp. and Aeromonas hydrophila among E. mollis clones. It is not yet clear what kind of roles Lysobacter plays in association with sand dune plants, but its universal presence in the rhizosphere, together with the potential of this taxon for antagonistic activity against plant pathogens, suggests that Lysobacter might form a symbiotic relationship with its host plants.
authors.affiliation: Food Analysis Research Center, Suwon Women's College, 336-27 Sanggi-ri, Bongdam-eup, Whasung, Kyunggi, 445-895, Republic of Korea.
authors.forename: Myoung Sook
authors.initials: MS
authors.lastname: Lee
authors.forename: Jin Ok
authors.initials: JO
authors.lastname: Do
authors.forename: Myung Soo
authors.initials: MS
authors.lastname: Park
authors.forename: Sera
authors.initials: S
authors.lastname: Jung
authors.forename: Kang Hyun
authors.initials: KH
authors.lastname: Lee
authors.forename: Kyung Sook
authors.initials: KS
authors.lastname: Bae
authors.forename: Seong Joo
authors.initials: SJ
authors.lastname: Park
authors.forename: Seung Bum
authors.initials: SB
authors.lastname: Kim
mesh_terms: D015373:Bacterial Typing Techniques; D031253:Calystegia / Q000382:microbiology*; D004269:DNA, Bacterial / Q000032:analysis; D004275:DNA, Ribosomal / Q000032:analysis; D031749:Elymus / Q000382:microbiology*; D010802:Phylogeny; D012329:RNA, Bacterial / Q000032:analysis; D012336:RNA, Ribosomal, 16S / Q000032:analysis; D015183:Restriction Mapping; D021521:Ribotyping; D017422:Sequence Analysis, DNA; D044166:Xanthomonadaceae / Q000145:classification / Q000235:genetics / Q000302:isolation & purification*
chemical_list: D004269:DNA, Bacterial; D004275:DNA, Ribosomal; D012329:RNA, Bacterial; D012336:RNA, Ribosomal, 16S