title: Genome-wide transcriptional profiling in human squamous cell carcinoma of the skin identifies unique tumor-associated signatures.
abstract: The elucidation of specific genetic changes associated with human cancer pathogenesis has focused efforts to relate such changes to the neoplastic phenotype. To further our understanding of the genetic basis of human squamous cell carcinoma (SCC) of the skin, this study used a genome-wide (12 627 sequences) approach to determine transcriptional signatures in lesional and nonlesional sites from five SCC patients. Several novel genes involving the p53 pathway, anti-apoptotic pathways, signal transduction, structural loss and DNA replication, including BCL2A1, MUC4, PTPN11 (SHP2) and FGF9, are upregulated in SCC and could warrant further study regarding their role in disease pathogenesis. SCC pathology is likely combinatorial in nature involving the compounded changes from several cellular processes.
authors.affiliation: Department of Dermatology, Weill Cornell Medical College, New York, New York, USA.
authors.forename: Vinnie P
authors.initials: VP
authors.lastname: Kathpalia
authors.forename: Erich N
authors.initials: EN
authors.lastname: Mussak
authors.forename: Selwyn S
authors.initials: SS
authors.lastname: Chow
authors.forename: Phillip H
authors.initials: PH
authors.lastname: Lam
authors.forename: Nathan
authors.initials: N
authors.lastname: Skelley
authors.forename: Michael
authors.initials: M
authors.lastname: Time
authors.forename: Robert J
authors.initials: RJ
authors.lastname: Markelewicz
authors.forename: Darja
authors.initials: D
authors.lastname: Kanduc
authors.forename: Lucy
authors.initials: L
authors.lastname: Lomas
authors.forename: Zhaoying
authors.initials: Z
authors.lastname: Xiang
authors.forename: Animesh A
authors.initials: AA
authors.lastname: Sinha
mesh_terms: D000368:Aged; D000369:Aged, 80 and over; D002294:Carcinoma, Squamous Cell / Q000235:genetics*; D016022:Case-Control Studies; D002471:Cell Transformation, Neoplastic / Q000235:genetics; D018076:DNA, Complementary / Q000032:analysis; D005260:Female; D020869:Gene Expression Profiling; D015972:Gene Expression Regulation, Neoplastic; D020022:Genetic Predisposition to Disease; D015894:Genome, Human; D006801:Humans; D008297:Male; D012313:RNA / Q000032:analysis; D020133:Reverse Transcriptase Polymerase Chain Reaction; D012878:Skin Neoplasms / Q000235:genetics*; D014158:Transcription, Genetic
chemical_list: D018076:DNA, Complementary; D012313:RNA