title: Major antifungal activity from the bulbs of Indian squill Urginea indica is a chitinase.
abstract: We have identified a chitinase with antifungal activity in the bulbs of the plant Urginea indica(Indian squill) and purified it about 26-fold. The purified preparation contained a Mr 29 kDa protein that was an active growth inhibitor of the fungal pathogens Fusarium oxysporum and Rhizoctonia solani in an in vitro assay. Amino acid sequence analysis of the Mr 29 kDa protein revealed it to be highly homologous to the family 19 glycoside hydrolases, which are known to possess chitinase activity. The U. indica chitinase lacked a cysteine-rich N-terminal domain (characteristic of class I chitinases) and contained a conserved motif indicative of the signature 1 of family 19 glycoside hydrolases. It shared a approximately 70% sequence identity with the 26 kDa endochitinase of Hordeum vulgare, a typical class II chitinase of family 19. The five cysteines in the partial sequence of the Mr 29 kDa chitinase were found to be identical in location to five of the seven cysteines present in the catalytic domain of the H. vulgare enzyme. The molecular weight, the lack of an N-terminal cysteine-rich sequence, and the striking identity to the H. vulgare endochitinase suggest that the Mr 29 kDa U. indica protein is a putative class II chitinase. The antifungal activity is presumably mediated through the chitinolytic activity of the Mr 29 kDa protein.
authors.affiliation: Department of Chemistry, Indian Institute of Technology Delhi, New Delhi 110 016, India. sandhya@scfbio-iitd.res.in
authors.forename: Sandhya R
authors.initials: SR
authors.lastname: Shenoy
authors.forename: M N Shiva
authors.initials: MN
authors.lastname: Kameshwari
authors.forename: S
authors.initials: S
authors.lastname: Swaminathan
authors.forename: M N
authors.initials: MN
authors.lastname: Gupta
mesh_terms: D000595:Amino Acid Sequence; D000935:Antifungal Agents / Q000494:pharmacology*; D002688:Chitinases / Q000737:chemistry / Q000302:isolation & purification / Q000494:pharmacology*; D031448:Drimia / Q000201:enzymology*; D004789:Enzyme Activation; D008826:Microbial Sensitivity Tests; D008969:Molecular Sequence Data; D008970:Molecular Weight; D018517:Plant Roots / Q000201:enzymology*; D016415:Sequence Alignment; D013045:Species Specificity
chemical_list: D000935:Antifungal Agents; D002688:Chitinases