title: Effusion and solid lymphomas have distinctive gene and protein expression profiles in an animal model of primary effusion lymphoma.
abstract: Lymphoma usually forms solid tumours in patients, and high expression levels of adhesion molecules are observed in these tumours. However, Kaposi's sarcoma-associated herpesvirus (KSHV)-related primary effusion lymphoma (PEL) does not form solid tumours and adhesion molecule expression is suppressed in the cells. Inoculation of a KSHV-associated PEL cell line into the peritoneal cavity of severe combined immunodeficiency mice resulted in the formation of effusion and solid lymphomas in the peritoneal cavity. Proteomics using two-dimensional difference gel electrophoresis and DNA microarray analyses identified 14 proteins and 105 genes, respectively, whose expression differed significantly between effusion and solid lymphomas. Five genes were identified as having similar expression profiles to that of lymphocyte function-associated antigen 1, an important adhesion molecule in leukocytes. Among these, coronin 1A, an actin-binding protein, was identified as a molecule showing high expression in solid lymphoma by both DNA microarray and proteomics analyses. Western and northern blotting showed that coronin 1A was predominantly expressed in solid lymphomas. Moreover, KSHV-encoded lytic proteins, including viral interleukin-6, were highly expressed in effusion lymphoma compared with solid lymphoma. These data demonstrate that effusion and solid lymphomas possess distinctive gene and protein expression profiles in our mouse model, and suggest that differences in gene and protein expression between effusion and solid lymphomas may be associated with the formation of effusion lymphoma or invasive features of solid lymphoma. Furthermore, the results obtained using this combination of proteomics and DNA microarray analyses indicate that protein synthesis partly reflects, but does not correlate strictly with, mRNA production.
authors.affiliation: Department of Clinical Informatics, Tokyo Medical and Dental University, Japan.
authors.forename: Y
authors.initials: Y
authors.lastname: Yanagisawa
authors.forename: Y
authors.initials: Y
authors.lastname: Sato
authors.forename: Y
authors.initials: Y
authors.lastname: Asahi-Ozaki
authors.forename: E
authors.initials: E
authors.lastname: Ito
authors.forename: R
authors.initials: R
authors.lastname: Honma
authors.forename: J
authors.initials: J
authors.lastname: Imai
authors.forename: T
authors.initials: T
authors.lastname: Kanno
authors.forename: M
authors.initials: M
authors.lastname: Kano
authors.forename: H
authors.initials: H
authors.lastname: Akiyama
authors.forename: T
authors.initials: T
authors.lastname: Sata
authors.forename: F
authors.initials: F
authors.lastname: Shinkai-Ouchi
authors.forename: Y
authors.initials: Y
authors.lastname: Yamakawa
authors.forename: S
authors.initials: S
authors.lastname: Watanabe
authors.forename: H
authors.initials: H
authors.lastname: Katano
mesh_terms: D000163:Acquired Immunodeficiency Syndrome / Q000821:virology*; D000818:Animals; D045744:Cell Line, Tumor; D004279:DNA, Viral / Q000032:analysis; D015180:Electrophoresis, Gel, Two-Dimensional; D020869:Gene Expression Profiling; D015967:Gene Expression Regulation, Viral; D019288:Herpesvirus 8, Human; D006801:Humans; D016169:Lymphocyte Function-Associated Antigen-1 / Q000235:genetics; D016483:Lymphoma, AIDS-Related / Q000235:genetics*; D051379:Mice; D016513:Mice, SCID; D023421:Models, Animal; D020411:Oligonucleotide Array Sequence Analysis; D016066:Pleural Effusion, Malignant / Q000378:metabolism / Q000821:virology; D040901:Proteomics; D020133:Reverse Transcriptase Polymerase Chain Reaction; D012514:Sarcoma, Kaposi / Q000235:genetics*; D014764:Viral Proteins / Q000032:analysis
chemical_list: D004279:DNA, Viral; D016169:Lymphocyte Function-Associated Antigen-1; D014764:Viral Proteins