title: The importance of including local correlation times in the calculation of inter-proton distances from NMR measurements: ignoring local correlation times leads to significant errors in the conformational analysis of the Glc alpha1-2Glc alpha linkage by NMR spectroscopy.
abstract: The experimental determination of oligosaccharide conformations has traditionally used cross-linkage 1H-1H NOE/ROEs. As relatively few NOEs are observed, to provide sufficient conformational constraints this method relies on: accurate quantification of NOE intensities (positive constraints); analysis of absent NOEs (negative constraints); and hence calculation of inter-proton distances using the two-spin approximation. We have compared the results obtained by using 1H 2D NOESY, ROESY and T-ROESY experiments at 500 and 700 MHz to determine the conformation of the terminal Glc alpha1-2Glc alpha linkage in a dodecasaccharide and a related tetrasaccharide. For the tetrasaccharide, the NOESY and ROESY spectra produced the same qualitative pattern of linkage cross-peaks but the quantitative pattern, the relative peak intensities, was different. For the dodecasaccharide, the NOESY and ROESY spectra at 500 MHz produced a different qualitative pattern of linkage cross-peaks, with fewer peaks in the NOESY spectrum. At 700 MHz, the NOESY and ROESY spectra of the dodecasaccharide produced the same qualitative pattern of peaks, but again the relative peak intensities were different. These differences are due to very significant differences in the local correlation times for different proton pairs across this glycosidic linkage. The local correlation time for each proton pair was measured using the ratio of the NOESY and T-ROESY cross-relaxation rates, leaving the NOESY and ROESY as independent data sets for calculating the inter-proton distances. The inter-proton distances calculated including the effects of differences in local correlation times give much more consistent results.
authors.affiliation: Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.
authors.forename: Mukram
authors.initials: M
authors.lastname: Mackeen
authors.forename: Andrew
authors.initials: A
authors.lastname: Almond
authors.forename: Ian
authors.initials: I
authors.lastname: Cumpstey
authors.forename: Seth C
authors.initials: SC
authors.lastname: Enis
authors.forename: Eriks
authors.initials: E
authors.lastname: Kupce
authors.forename: Terry D
authors.initials: TD
authors.lastname: Butters
authors.forename: Antony J
authors.initials: AJ
authors.lastname: Fairbanks
authors.forename: Raymond A
authors.initials: RA
authors.lastname: Dwek
authors.forename: Mark R
authors.initials: MR
authors.lastname: Wormald
mesh_terms: D000117:Acetylglucosamine / Q000737:chemistry; D002236:Carbohydrate Conformation; D002240:Carbohydrate Sequence; D005947:Glucose / Q000737:chemistry; D008358:Mannose / Q000737:chemistry; D008969:Molecular Sequence Data; D019906:Nuclear Magnetic Resonance, Biomolecular / Q000379:methods*; D009844:Oligosaccharides / Q000737:chemistry*; D011522:Protons
chemical_list: D009844:Oligosaccharides; D011522:Protons; D005947:Glucose; D008358:Mannose; D000117:Acetylglucosamine