title: Assessment of allelic variation in the ccrAB locus in methicillin-resistant Staphylococcus aureus clones.
abstract: OBJECTIVE
  To evaluate the allelic variability of ccrA and ccrB among methicillin-resistant Staphylococcus aureus (MRSA) strains belonging to different genetic lineages and carrying different SCCmec types.
  
  
  METHODS
  Internal fragments from both genes were obtained by PCR amplification with pairs of degenerate primers and the nucleotide sequence was determined for both strands. Nucleotide sequences were aligned and the phylogenetic trees were reconstructed.
  
  
  RESULTS
  The homology scores obtained confirmed the very close relationships among ccrAB alleles associated with each SCCmec type, which further validate this locus as a good target for SCCmec typing strategies. Using this strategy, particularly for the ccrB gene, SCCmec types with the same ccrAB allotype, as detected by PCR, could be discriminated and some strains with non-typeable ccrAB loci were resolved.
  
  
  CONCLUSIONS
  We propose that sequencing an internal fragment of ccrB is a strategy for SCCmec typing that may be easily incorporated into other sequence-based MRSA typing strategies, such as multi-locus sequence typing and spa typing.
authors.affiliation: Laboratory of Molecular Genetics, Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa Oeiras, Portugal. dco@itqb.unl.pt
authors.forename: Duarte C
authors.initials: DC
authors.lastname: Oliveira
authors.forename: Catarina
authors.initials: C
authors.lastname: Milheiriço
authors.forename: Susana
authors.initials: S
authors.lastname: Vinga
authors.forename: Hermínia
authors.initials: H
authors.lastname: de Lencastre
mesh_terms: D000483:Alleles; D001426:Bacterial Proteins / Q000235:genetics; D014644:Genetic Variation; D005838:Genotype; D016106:Methicillin Resistance; D010802:Phylogeny; D013211:Staphylococcus aureus / Q000187:drug effects* / Q000235:genetics*
chemical_list: D001426:Bacterial Proteins