title: The frequent observation of evidence for nonsense-mediated decay in RNA from patients with carbamyl phosphate synthetase I deficiency.
abstract: CPSI deficiency is an inborn error of metabolism caused by mutations in the first, rate-determining enzyme of the urea cycle. Our mutation detection data from this disorder suggest that a significant number of mutant alleles cause RNA instability, most likely through the nonsense-mediated decay pathway. We identified 26 non-consanguinous CPSID patients with an available RNA source (liver tissue or cell line) and screened both genomic DNA and RNA for the identification and classification of mutations. Out of 52 total alleles screened from these patients, 21 (40%) have strong evidence for RNA processing mutations demonstrated by absent/minimal heterozygosity in patient cDNA sequences despite heterozygous genomic changes. These 21 alleles are a heterogenous group primarily composed of splicing defects and frameshifts that form premature termination codons which should subsequently elicit the nonsense-mediated decay pathway. This study provides evidence for the high prevalence of RNA instability mutations in genetic disease and underscores the importance of accounting for them in mutation-screening strategies.
authors.affiliation: Vanderbilt University, Center for Human Genetic Research, Department of Molecular Physiology and Biophysics, Nashville, TN, USA. marshall.summar@vanderbilt.edu <marshall.summar@vanderbilt.edu>
authors.forename: A M
authors.initials: AM
authors.lastname: Eeds
authors.forename: L D
authors.initials: LD
authors.lastname: Hall
authors.forename: M
authors.initials: M
authors.lastname: Yadav
authors.forename: A
authors.initials: A
authors.lastname: Willis
authors.forename: S
authors.initials: S
authors.lastname: Summar
authors.forename: A
authors.initials: A
authors.lastname: Putnam
authors.forename: F
authors.initials: F
authors.lastname: Barr
authors.forename: M L
authors.initials: ML
authors.lastname: Summar
mesh_terms: D000483:Alleles; D002222:Carbamoyl-Phosphate Synthase (Ammonia) / Q000235:genetics; D020165:Carbamoyl-Phosphate Synthase I Deficiency Disease / Q000175:diagnosis*; D018389:Codon, Nonsense / Q000235:genetics*; D004252:DNA Mutational Analysis; D005260:Female; D006801:Humans; D007223:Infant; D007231:Infant, Newborn; D008297:Male; D020871:RNA Stability / Q000235:genetics*; D012333:RNA, Messenger / Q000032:analysis* / Q000378:metabolism; D020133:Reverse Transcriptase Polymerase Chain Reaction
chemical_list: D018389:Codon, Nonsense; D012333:RNA, Messenger; D002222:Carbamoyl-Phosphate Synthase (Ammonia)