Compositional correlations in canine genome reflects similarity with human genes.
The base compositional correlations that hold among various coding and noncoding regions of the canine genome have been analysed. The distribution pattern of genes, on the basis of GC(3) composition, shows a wide range similar to that observed in human. However the occurrence of maximum number of genes was observed in the range of 65-75% of GC(3) composition. The correlation between the coding DNA sequences of canine with the different noncoding regions (introns and flanking regions) is found to be significant and in many cases the degree of correlation show similarity to human genome. We found that these correlations are not limited to the GC content alone, but is holding at the level of the frequency of individual bases as well. The present study suggests that canines ideally belong to the predicted 'general mammalian pattern' of genome composition along with human beings.
Joy
Faustin
F
Bioinformatics Centre, Bose Institute, Kolkata, India.
Basak
Surajit
S
Gupta
Sanjib Kumar
SK
Das
Pranab Jyoti
PJ
Ghosh
Shankar Kumar
SK
Ghosh
Tapash Chandra
TC
D000818:Animals; D001482:Base Composition; D005075:Biological Evolution; D003062:Codon / Q000737:chemistry; D004285:Dogs / Q000235:genetics*; D005796:Genes; D016678:Genome; D006801:Humans; D007438:Introns / Q000235:genetics
D003062:Codon