title: A simple and economical short-oligonucleotide-based approach to shRNA generation.
abstract: RNAi (RNA interference) has become a popular means of knocking down a specific gene in vivo. The most common approach involves the use of chemically synthesized short interfering RNAs (siRNAs), which are relatively easy and fast to use, but which are costly and have only transient effects. These limitations can be overcome by using short hairpin RNA (shRNA) expression vectors. However, current methods of generating shRNA expression vectors require either the synthesis of long (50-70 nt) costly oligonucleotides or multi-step processes. To overcome this drawback, we have developed a one-step short-oligonucleotides- based method with preparation costs of only 15% of those of the conventional methods used to obtain essentially the same DNA fragment encoding shRNA. Sequences containing 19 bases homologous to target genes were synthesized as 17- and 31-nt DNA oligonucleotides and used to construct shRNA expression vectors. Using these plasmids, we were able to effectively silence target genes. Because our method relies on the one-step ligation of short oligonucleotides, it is simple, less error-prone, and economical.
authors.affiliation: Department of Biomedical Science, Hallym University, Chunchon, Korea.
authors.forename: Jinsu
authors.initials: J
authors.lastname: Kim
authors.forename: Hyukmin
authors.initials: H
authors.lastname: Kim
authors.forename: Yoonsoo
authors.initials: Y
authors.lastname: Lee
authors.forename: Kyungbae
authors.initials: K
authors.lastname: Yang
authors.forename: Sangwon
authors.initials: S
authors.lastname: Byun
authors.forename: Kyuhyunng
authors.initials: K
authors.lastname: Han
mesh_terms: D002460:Cell Line; D003001:Cloning, Molecular / Q000379:methods*; D005822:Genetic Vectors; D006367:HeLa Cells; D006801:Humans; D009690:Nucleic Acid Conformation; D009841:Oligonucleotides / Q000138:chemical synthesis*; D047495:PPAR gamma / Q000235:genetics / Q000378:metabolism; D012313:RNA / Q000235:genetics / Q000378:metabolism*; D034622:RNA Interference; D034741:RNA, Small Interfering / Q000378:metabolism*
chemical_list: D009841:Oligonucleotides; D047495:PPAR gamma; D034741:RNA, Small Interfering; D012313:RNA