title: Dynamic analysis of optimality in myocardial energy metabolism under normal and ischemic conditions.
abstract: To better understand the dynamic regulation of optimality in metabolic networks under perturbed conditions, we reconstruct the energetic-metabolic network in mammalian myocardia using dynamic flux balance analysis (DFBA). Additionally, we modified the optimal objective from the maximization of ATP production to the minimal fluctuation of the profile of metabolite concentration under ischemic conditions, extending the hypothesis of original minimization of metabolic adjustment to create a composite modeling approach called M-DFBA. The simulation results are more consistent with experimental data than are those of the DFBA model, particularly the retentive predominant contribution of fatty acid to oxidative ATP synthesis, the exact mechanism of which has not been elucidated and seems to be unpredictable by the DFBA model. These results suggest that the systemic states of metabolic networks do not always remain optimal, but may become suboptimal when a transient perturbation occurs. This finding supports the relevance of our hypothesis and could contribute to the further exploration of the underlying mechanism of dynamic regulation in metabolic networks.
authors.affiliation: Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China.
authors.forename: Ruo-Yu
authors.initials: RY
authors.lastname: Luo
authors.forename: Sha
authors.initials: S
authors.lastname: Liao
authors.forename: Guan-Yang
authors.initials: GY
authors.lastname: Tao
authors.forename: Yuan-Yuan
authors.initials: YY
authors.lastname: Li
authors.forename: Shaoqun
authors.initials: S
authors.lastname: Zeng
authors.forename: Yi-Xue
authors.initials: YX
authors.lastname: Li
authors.forename: Qingming
authors.initials: Q
authors.lastname: Luo
mesh_terms: D003198:Computer Simulation; D004734:Energy Metabolism; D008955:Models, Cardiovascular; D017202:Myocardial Ischemia / Q000378:metabolism*; D009206:Myocardium / Q000378:metabolism*