title: In situ kinetics of cytochromes c1 and c2.
abstract: In Rhodobacter sphaeroides chromatophores, cytochromes (cyt) c(1) and c(2) have closely overlapping spectra, and their spectral deconvolution provides a challenging task. As a result, analyses of the kinetics of different cytochrome components of the bc(1) complex in purple bacteria usually report only the sum cyt c(1) + cyt c(2) kinetics. Here we used newly determined difference spectra of individual components to resolve the kinetics of cyt c(1) and c(2) in situ via a least-squares (LS) deconvolution. We found that the kinetics of cyt c(1) and c(2) are significantly different from those measured using the traditional difference wavelength (DW) approach, based on the difference in the absorbance at two different wavelengths specific for each component. In particular, with the wavelength pairs previously recommended, differences in instrumental calibration led to kinetics of flash-induced cyt c(1) oxidation measured with the DW method which were faster than those determined by the LS method (half-time of approximately 120 micros vs half-time of approximately 235 micros, in the presence of antimycin). In addition, the LS approach revealed a delay of approximately 50 micros in the kinetics of cyt c(1) oxidation, which was masked when the DW approach was used. We attribute this delay to all processes leading to the oxidation of cyt c(1) after light activation of the photosynthetic reaction center, especially the dissociation of cyt c(2) from the reaction center. We also found that kinetics of both cyt c(1) and c(2) measured by the DW approach were significantly distorted at times longer than 1 ms, due to spectral contamination from changes in the b hemes. The successful spectral deconvolution of cyt c(1) and c(2), and inclusion of both cytochromes in the kinetic analysis, significantly increase the data available for mechanistic understanding of bc(1) turnover in situ.
authors.affiliation: Department of Biochemistry, University of Illinois, 156 Davenport Hall, 607 South Mathews Avenue, Urbana, Illinois 6l80l, USA. vshinkar@uiuc.edu
authors.forename: Vladimir P
authors.initials: VP
authors.lastname: Shinkarev
authors.forename: Antony R
authors.initials: AR
authors.lastname: Crofts
authors.forename: Colin A
authors.initials: CA
authors.lastname: Wraight
mesh_terms: D000968:Antimycin A / Q000494:pharmacology; D003575:Cytochromes c1 / Q000037:antagonists & inhibitors / Q000378:metabolism*; D045362:Cytochromes c2 / Q000037:antagonists & inhibitors / Q000378:metabolism*; D007700:Kinetics; D016018:Least-Squares Analysis; D008689:Methacrylates / Q000494:pharmacology; D010084:Oxidation-Reduction; D012242:Rhodobacter sphaeroides / Q000201:enzymology; D013053:Spectrophotometry; D013844:Thiazoles / Q000494:pharmacology
chemical_list: D008689:Methacrylates; D013844:Thiazoles; D000968:Antimycin A; C030517:myxothiazol; D003575:Cytochromes c1; D045362:Cytochromes c2