title: Chromosome aberrations in solid tumors have a stochastic nature.
abstract: An important question nowadays is whether chromosome aberrations are random events or arise from an internal deterministic mechanism, which leads to the delicate task of quantifying the degree of randomness. For this purpose, we have defined several Shannon information functions to evaluate disorder inside a tumor and between tumors of the same kind. We have considered 79 different kinds of solid tumors with 30 or more karyotypes retrieved from the Mitelman Database of Chromosome Aberrations in Cancer. The Kaplan-Meier cumulative survival was also obtained for each solid tumor type in order to correlate data with tumor malignance. The results here show that aberration spread is specific for each tumor type, with high degree of diversity for those tumor types with worst survival indices. Those tumor types with preferential variants (e.g. high proportion of a given karyotype) have shown better survival statistics, indicating that aberration recurrence is a good prognosis. Indeed, global spread of both numerical and structural abnormalities demonstrates the stochastic nature of chromosome aberrations by setting a signature of randomness associated to the production of disorder. These results also indicate that tumor malignancy correlates not only with karyotypic diversity taken from different tumor types but also taken from single tumors. Therefore, by quantifying aberration spread, we could confront diverse models and verify which of them points to the most likely outcome. Our results suggest that the generating process of chromosome aberrations is neither deterministic nor totally random, but produces variations that are distributed between these two boundaries.
authors.affiliation: Departamento de Bioquímica, Universidade Federal do Rio Grande do Sul, Rua Ramiro Barcelos 2600-anexo, Porto Alegre 90035-003, Brazil. mauro@ufrgs.br <mauro@ufrgs.br>
authors.forename: Mauro A A
authors.initials: MA
authors.lastname: Castro
authors.forename: Tor G H
authors.initials: TG
authors.lastname: Onsten
authors.forename: José C F
authors.initials: JC
authors.lastname: Moreira
authors.forename: Rita M C
authors.initials: RM
authors.lastname: de Almeida
mesh_terms: D002869:Chromosome Aberrations; D003627:Data Interpretation, Statistical; D014644:Genetic Variation; D006801:Humans; D007621:Karyotyping; D009369:Neoplasms / Q000235:genetics*; D016008:Statistical Distributions; D013269:Stochastic Processes