title: The Autoimmune Disease Database: a dynamically compiled literature-derived database.
abstract: BACKGROUND
  Autoimmune diseases are disorders caused by an immune response directed against the body's own organs, tissues and cells. In practice more than 80 clinically distinct diseases, among them systemic lupus erythematosus and rheumatoid arthritis, are classified as autoimmune diseases. Although their etiology is unclear these diseases share certain similarities at the molecular level i.e. susceptibility regions on the chromosomes or the involvement of common genes. To gain an overview of these related diseases it is not feasible to do a literary review but it requires methods of automated analyses of the more than 500,000 Medline documents related to autoimmune disorders.
  
  
  RESULTS
  In this paper we present the first version of the Autoimmune Disease Database which to our knowledge is the first comprehensive literature-based database covering all known or suspected autoimmune diseases. This dynamically compiled database allows researchers to link autoimmune diseases to the candidate genes or proteins through the use of named entity recognition which identifies genes/proteins in the corresponding Medline abstracts. The Autoimmune Disease Database covers 103 autoimmune disease concepts. This list was expanded to include synonyms and spelling variants yielding a list of over 1,200 disease names. The current version of the database provides links to 541,690 abstracts and over 5,000 unique genes/proteins.
  
  
  CONCLUSIONS
  The Autoimmune Disease Database provides the researcher with a tool to navigate potential gene-disease relationships in Medline abstracts in the context of autoimmune diseases.
authors.affiliation: Institute for Medical Informatics and Biometry, University of Rostock, Rembrandt-Str, 16/17, 18055 Rostock, Germany. thomas.karopka@uni-rostock.de
authors.forename: Thomas
authors.initials: T
authors.lastname: Karopka
authors.forename: Juliane
authors.initials: J
authors.lastname: Fluck
authors.forename: Heinz-Theodor
authors.initials: HT
authors.lastname: Mevissen
authors.forename: Anne
authors.initials: A
authors.lastname: Glass
mesh_terms: D001327:Autoimmune Diseases / Q000145:classification / Q000235:genetics; D016208:Databases, Factual; D030541:Databases, Genetic; D005069:Evaluation Studies as Topic; D006801:Humans; D020407:Internet; D016239:MEDLINE; D046650:Medical Subject Headings; D018511:Systems Integration; D014584:User-Computer Interface; D018875:Vocabulary, Controlled