Molecular conformations of a disaccharide investigated using NMR spectroscopy.
The molecular structure of alpha-L-Rhap-(1--> 2)-alpha-L-Rhap-OMe has been investigated using conformation sensitive NMR parameters: cross-relaxation rates, scalar 3J(CH) couplings and residual dipolar couplings obtained in a dilute liquid crystalline phase. The order matrices of the two sugar residues are different, which indicates that the molecule cannot exist in a single conformation. The conformational distribution function, P(phi, psi) related to the two glycosidic linkage torsion angles phi and psi was constructed using the APME method, valid in the low orientational order limit. The APME approach is based on the additive potential (AP) and maximum entropy (ME) models. The analyses of the trajectories generated in molecular dynamics and Langevin dynamics (LD) computer simulations gave support to the distribution functions constructed from the experimental NMR parameters. It is shown that at least two conformational regions are populated on the Ramachandran map and that these regions exhibit very different molecular order.
Landersjö
Clas
C
Arrhenius Laboratory, Department of Organic Chemistry, Stockholm University, S-106 91, Stockholm, Sweden.
Stevensson
Baltzar
B
Eklund
Robert
R
Ostervall
Jennie
J
Söderman
Peter
P
Widmalm
Göran
G
Maliniak
Arnold
A
D002236:Carbohydrate Conformation; D002240:Carbohydrate Sequence; D003198:Computer Simulation; D004187:Disaccharides / Q000737:chemistry*; D009682:Magnetic Resonance Spectroscopy / Q000379:methods*
D004187:Disaccharides; C076977:rhamnopyranosyl-(1-2)-rhamnopyranoside-(1-methyl ether)