Building an ontology of pulmonary diseases with natural language processing tools using textual corpora.
Pathologies and acts are classified in thesauri to help physicians to code their activity. In practice, the use of thesauri is not sufficient to reduce variability in coding and thesauri are not suitable for computer processing. We think the automation of the coding task requires a conceptual modeling of medical items: an ontology. Our task is to help lung specialists code acts and diagnoses with software that represents medical knowledge of this concerned specialty by an ontology. The objective of the reported work was to build an ontology of pulmonary diseases dedicated to the coding process. To carry out this objective, we develop a precise methodological process for the knowledge engineer in order to build various types of medical ontologies. This process is based on the need to express precisely in natural language the meaning of each concept using differential semantics principles. A differential ontology is a hierarchy of concepts and relationships organized according to their similarities and differences. Our main research hypothesis is to apply natural language processing tools to corpora to develop the resources needed to build the ontology. We consider two corpora, one composed of patient discharge summaries and the other being a teaching book. We propose to combine two approaches to enrich the ontology building: (i) a method which consists of building terminological resources through distributional analysis and (ii) a method based on the observation of corpus sequences in order to reveal semantic relationships. Our ontology currently includes 1550 concepts and the software implementing the coding process is still under development. Results show that the proposed approach is operational and indicates that the combination of these methods and the comparison of the resulting terminological structures give interesting clues to a knowledge engineer for the building of an ontology.
Baneyx
Audrey
A
INSERM U729, Laboratoire SPIM, Faculté de Médecine Broussais, Hôtel-Dieu, 15 rue de l'Ecole de médecine, Paris, France. audrey.baneyx@spim.jussieu.fr
Charlet
Jean
J
Jaulent
Marie-Christine
MC
D005602:France; D006801:Humans; D038801:International Classification of Diseases; D008171:Lung Diseases; D009323:Natural Language Processing; D009626:Terminology as Topic; D018875:Vocabulary, Controlled