title: Adeno-associated virus (AAV) capsid genes isolated from rat and mouse liver genomic DNA define two new AAV species distantly related to AAV-5.
abstract: Using polymerase chain reactions and genome walking strategies, adeno-associated virus (AAV)-like capsid genes were isolated from rat and mouse liver genomic DNA, where they are present at <5 copies per cell. These genes define two new species of AAVs since their amino acid sequences are <60% identical to each other or to any other AAV capsid. They are most similar to the AAV-5 and goat AAV capsids. A recombinant vector with the mouse AAV capsid and a lacZ transgene (rAAV-mo.1 lacZ) was able to transduce rodent cell lines in vitro. However, it was not able to transduce eight human cell lines or primary human fibroblasts in vitro. It did not bind heparin and its ability to transduce cells in vitro was not inhibited by heparin, mucin, or sialic acid suggesting it uses a novel entry receptor. rAAV-mo.1 lacZ was 29 times more resistant to in vitro neutralization by pooled, purified human IgG than AAV-2. In vivo, rAAV-mo.1 lacZ efficiently transduced murine ocular cells after a subretinal injection. Intramuscular injection of a rAAV-mo.1 human factor IX (hFIX) vector into mice resulted in no detectable hFIX in plasma, but intravenous injection resulted in high plasma levels of hFIX, equivalent to that obtained from a rAAV-8 hFIX vector. Biodistribution analysis showed that rAAV-mo.1 primarily transduced liver after an intravenous injection. These AAV capsids may be useful for gene transfer in rodents.
authors.affiliation: Avigen, Inc., 1301 Harbor Bay Parkway, Alameda, CA 94502-6541, USA. mlochrie@synergenics.net
authors.forename: Michael A
authors.initials: MA
authors.lastname: Lochrie
authors.forename: Gwen P
authors.initials: GP
authors.lastname: Tatsuno
authors.forename: Alejandra E
authors.initials: AE
authors.lastname: Arbetman
authors.forename: Kris
authors.initials: K
authors.lastname: Jones
authors.forename: Cheryl
authors.initials: C
authors.lastname: Pater
authors.forename: Peter H
authors.initials: PH
authors.lastname: Smith
authors.forename: Jennifer W
authors.initials: JW
authors.lastname: McDonnell
authors.forename: Shang-Zhen
authors.initials: SZ
authors.lastname: Zhou
authors.forename: Shu
authors.initials: S
authors.lastname: Kachi
authors.forename: Michiko
authors.initials: M
authors.lastname: Kachi
authors.forename: Peter A
authors.initials: PA
authors.lastname: Campochiaro
authors.forename: Glenn F
authors.initials: GF
authors.lastname: Pierce
authors.forename: Peter
authors.initials: P
authors.lastname: Colosi
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D001483:Base Sequence; D002213:Capsid / Q000737:chemistry / Q000502:physiology*; D002460:Cell Line; D045744:Cell Line, Tumor; D017124:Conserved Sequence; D004279:DNA, Viral / Q000235:genetics / Q000302:isolation & purification*; D000229:Dependovirus / Q000737:chemistry / Q000235:genetics*; D018628:Gene Dosage; D006367:HeLa Cells; D006801:Humans; D066298:In Vitro Techniques; D008099:Liver / Q000821:virology*; D051379:Mice; D008958:Models, Molecular; D008969:Molecular Sequence Data; D041681:NIH 3T3 Cells; D009500:Neutralization Tests; D017434:Protein Structure, Tertiary; D051381:Rats; D017386:Sequence Homology, Amino Acid; D013045:Species Specificity; D014018:Tissue Distribution; D014161:Transduction, Genetic
chemical_list: D004279:DNA, Viral