title: A molecular assessment of phylogenetic relationships and lineage accumulation rates within the family Salamandridae (Amphibia, Caudata).
abstract: We examine phylogenetic relationships among salamanders of the family Salamandridae using approximately 2700 bases of new mtDNA sequence data (the tRNALeu, ND1, tRNAIle, tRNAGln, tRNAMet, ND2, tRNATrp, tRNAAla, tRNAAsn, tRNACys, tRNATyr, and COI genes and the origin for light-strand replication) collected from 96 individuals representing 61 of the 66 recognized salamandrid species and outgroups. Phylogenetic analyses using maximum parsimony and Bayesian analysis are performed on the new data alone and combined with previously reported sequences from other parts of the mitochondrial genome. The basal phylogenetic split is a polytomy of lineages ancestral to (1) the Italian newt Salamandrina terdigitata, (2) a strongly supported clade comprising the "true" salamanders (genera Chioglossa, Mertensiella, Lyciasalamandra, and Salamandra), and (3) a strongly supported clade comprising all newts except S. terdigitata. Strongly supported clades within the true salamanders include monophyly of each genus and grouping Chioglossa and Mertensiella as the sister taxon to a clade comprising Lyciasalamandra and Salamandra. Among newts, genera Echinotriton, Pleurodeles, and Tylototriton form a strongly supported clade whose sister taxon comprises the genera Calotriton, Cynops, Euproctus, Neurergus, Notophthalmus, Pachytriton, Paramesotriton, Taricha, and Triturus. Our results strongly support monophyly of all polytypic newt genera except Paramesotriton and Triturus, which appear paraphyletic, and Calotriton, for which only one of the two species is sampled. Other well-supported clades within newts include (1) Asian genera Cynops, Pachytriton, and Paramesotriton, (2) North American genera Notophthalmus and Taricha, (3) the Triturus vulgaris species group, and (4) the Triturus cristatus species group; some additional groupings appear strong in Bayesian but not parsimony analyses. Rates of lineage accumulation through time are evaluated using this nearly comprehensive sampling of salamandrid species-level lineages. Rate of lineage accumulation appears constant throughout salamandrid evolutionary history with no obvious fluctuations associated with origins of morphological or ecological novelties.
authors.affiliation: Department of Biology, Box 1137, Washington University, Saint Louis, MO 63130, USA. weisrock@uky.edu
authors.forename: David W
authors.initials: DW
authors.lastname: Weisrock
authors.forename: Theodore J
authors.initials: TJ
authors.lastname: Papenfuss
authors.forename: J Robert
authors.initials: JR
authors.lastname: Macey
authors.forename: Spartak N
authors.initials: SN
authors.lastname: Litvinchuk
authors.forename: Rosa
authors.initials: R
authors.lastname: Polymeni
authors.forename: Ismail H
authors.initials: IH
authors.lastname: Ugurtas
authors.forename: Ermi
authors.initials: E
authors.lastname: Zhao
authors.forename: Houman
authors.initials: H
authors.lastname: Jowkar
authors.forename: Allan
authors.initials: A
authors.lastname: Larson
mesh_terms: D000818:Animals; D001483:Base Sequence; D001499:Bayes Theorem; D004272:DNA, Mitochondrial / Q000737:chemistry / Q000235:genetics; D008969:Molecular Sequence Data; D010802:Phylogeny; D012345:RNA, Transfer, Amino Acid-Specific / Q000235:genetics; D012356:RNA, Transfer, Leu / Q000235:genetics; D012455:Salamandridae / Q000145:classification* / Q000235:genetics*; D016415:Sequence Alignment
chemical_list: D004272:DNA, Mitochondrial; D012345:RNA, Transfer, Amino Acid-Specific; D012356:RNA, Transfer, Leu