OrderedList--a bioconductor package for detecting similarity in ordered gene lists.
OrderedList is a Bioconductor compliant package for meta-analysis based on ordered gene lists like those resulting from differential gene expression analysis. Our package quantifies the similarity between gene lists. The significance of the similarity score is estimated from random scores computed on perturbed data. OrderedList illustrates list similarity in intuitive plots and determines the score-driving genes for further analysis.


BACKGROUND
http://www.bioconductor.org


BACKGROUND
claudio.lottaz@molgen.mpg.de


BACKGROUND
Please visit our webpage on http://compdiag.molgen.mpg.de/software.
Lottaz
Claudio
C
Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics Ihnestrasse 63-73, D-14195 Berlin, Germany.
Yang
Xinan
X
Scheid
Stefanie
S
Spang
Rainer
R
D000465:Algorithms; D001185:Artificial Intelligence; D003198:Computer Simulation; D020869:Gene Expression Profiling / Q000379:methods*; D008954:Models, Biological; D005810:Multigene Family / Q000502:physiology*; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D010363:Pattern Recognition, Automated; D012984:Software