Bacterial community structure of a pesticide-contaminated site and assessment of changes induced in community structure during bioremediation.
The introduction of culture-independent molecular screening techniques, especially based on 16S rRNA gene sequences, has allowed microbiologists to examine a facet of microbial diversity not necessarily reflected by the results of culturing studies. The bacterial community structure was studied for a pesticide-contaminated site that was subsequently remediated using an efficient degradative strain Arthrobacter protophormiae RKJ100. The efficiency of the bioremediation process was assessed by monitoring the depletion of the pollutant, and the effect of addition of an exogenous strain on the existing soil community structure was determined using molecular techniques. The 16S rRNA gene pool amplified from the soil metagenome was cloned and restriction fragment length polymorphism studies revealed 46 different phylotypes on the basis of similar banding patterns. Sequencing of representative clones of each phylotype showed that the community structure of the pesticide-contaminated soil was mainly constituted by Proteobacteria and Actinomycetes. Terminal restriction fragment length polymorphism analysis showed only nonsignificant changes in community structure during the process of bioremediation. Immobilized cells of strain RKJ100 enhanced pollutant degradation but seemed to have no detectable effects on the existing bacterial community structure.
Paul
Debarati
D
Institute of Microbial Technology, Chandigarh, India.
Pandey
Gunjan
G
Meier
Christoph
C
van der Meer
Jan Roelof
JR
Jain
Rakesh K
RK
D001173:Arthrobacter / Q000378:metabolism; D001673:Biodegradation, Environmental; D017753:Ecosystem; D015723:Gene Library; D007194:India; D008743:Methyl Parathion / Q000378:metabolism; D008969:Molecular Sequence Data; D009596:Nitrophenols / Q000378:metabolism; D010278:Parathion / Q000378:metabolism; D012150:Polymorphism, Restriction Fragment Length; D011157:Population Dynamics; D025341:Principal Component Analysis / Q000379:methods; D012336:RNA, Ribosomal, 16S / Q000235:genetics*; D012988:Soil Microbiology
D009596:Nitrophenols; D012336:RNA, Ribosomal, 16S; D008743:Methyl Parathion; D010278:Parathion; C024836:4-nitrophenol