SynView: a GBrowse-compatible approach to visualizing comparative genome data.
We present SynView, a simple and generic approach to dynamically visualize multi-species comparative genome data. It is a light-weight application based on the popular and configurable web-based GBrowse framework. It can be used with a variety of databases and provides the user with a high degree of interactivity. The tool is written in Perl and runs on top of the GBrowse framework. It is in use in the PlasmoDB (http://www.PlasmoDB.org) and the CryptoDB (http://www.CryptoDB.org) projects and can be easily integrated into other cross-species comparative genome projects.


BACKGROUND
The program and instructions are freely available at http://www.ApiDB.org/apps/SynView/


BACKGROUND
jkissing@uga.edu.
Wang
Haiming
H
Center for Tropical and Emerging Global Diseases, University of Georgia Athens, GA 30602-2606, USA.
Su
Yanqi
Y
Mackey
Aaron J
AJ
Kraemer
Eileen T
ET
Kissinger
Jessica C
JC
D000465:Algorithms; D002874:Chromosome Mapping / Q000379:methods*; D003196:Computer Graphics; D016678:Genome / Q000235:genetics*; D016415:Sequence Alignment / Q000379:methods*; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software; D013045:Species Specificity; D014584:User-Computer Interface