title: Structure, spectroscopy, and spectral tuning of the gas-phase retinal chromophore: the beta-ionone "handle" and alkyl group effect.
abstract: The low-lying singlet states (i.e. S0, S1, and S2) of the chromophore of rhodopsin, the protonated Schiff base of 11-cis-retinal (PSB11), and of its all-trans photoproduct have been studied in isolated conditions by using ab initio multiconfigurational second-order perturbation theory. The computed spectroscopic features include the vertical excitation, the band origin, and the fluorescence maximum of both isomers. On the basis of the S0-->S1 vertical excitation, the gas-phase absorption maximum of PSB11 is predicted to be 545 nm (2.28 eV). Thus, the predicted absorption maximum appears to be closer to that of the rhodopsin pigment (2.48 eV) and considerably red-shifted with respect to that measured in solution (2.82 eV in methanol). In addition, the absorption maxima associated with the blue, green, and red cone visual pigments are tentatively rationalized in terms of the spectral changes computed for PSB11 structures featuring differently twisted beta-ionone rings. More specifically, a blue-shifted absorption maximum is explained in terms of a large twisting of the beta-ionone ring (with respect to the main conjugated chain) in the visual S-cone (blue) pigment chromophore. In contrast, the chromophore of the visual L-cone (red) pigment is expected to have a nearly coplanar beta-ionone ring yielding a six double bond fully conjugated framework. Finally, the M-cone (green) chromophore is expected to feature a twisting angle between 10 and 60 degrees. The spectroscopic effects of the alkyl substituents on the PSB11 spectroscopic properties have also been investigated. It is found that they have a not negligible stabilizing effect on the S1-S0 energy gap (and, thus, cause a red shift of the absorption maximum) only when the double bond of the beta-ionone ring conjugates significantly with the rest of the conjugated chain.
authors.affiliation: Dipartimento di Chimica G. Ciamician, Università di Bologna, via Selmi 2, Bologna, I-40126 Italy.
authors.forename: Alessandro
authors.initials: A
authors.lastname: Cembran
authors.forename: Remedios
authors.initials: R
authors.lastname: Gonzalez-Luque
authors.forename: Piero
authors.initials: P
authors.lastname: Altoè
authors.forename: Manuela
authors.initials: M
authors.lastname: Merchan
authors.forename: Fernando
authors.initials: F
authors.lastname: Bernardi
authors.forename: Massimo
authors.initials: M
authors.lastname: Olivucci
authors.forename: Marco
authors.initials: M
authors.lastname: Garavelli
mesh_terms: D000478:Alkylation; D005740:Gases / Q000737:chemistry*; D006860:Hydrogen Bonding; D006900:Hydroxylation; D008958:Models, Molecular; D008968:Molecular Conformation; D045792:Norisoprenoids / Q000737:chemistry*; D012160:Retina / Q000737:chemistry*; D013057:Spectrum Analysis; D013237:Stereoisomerism; D014732:Vibration
chemical_list: D005740:Gases; D045792:Norisoprenoids; C008157:beta-ionone