title: Macrorestriction analysis of clinical and environmental isolates of Sporothrix schenckii.
abstract: Sporothrix schenckii causes sporotrichosis, a disease that most commonly presents as a subacute or chronic skin infection. An unusually high incidence of clinical cases of sporotrichosis occurred in the southwest of Western Australia over the last 5 years. Anecdotal accounts from patients implicated contact with hay prior to infection. Isolates of S. schenckii from hay and clinical cases were investigated by traditional phenotypic methods and pulsed-field gel electrophoresis (PFGE). The phenotypic evaluation separated S. schenckii from Ophiostoma spp. A DNA macrorestriction method using SfiI and NotI macrorestriction digestion by PFGE was developed to investigate the epidemiological connections. BioNumerics software was used to analyze the results. DNA macrorestriction digestion patterns for the recent Western Australian clinical isolates and four hay isolates were indistinguishable. Eastern state clinical isolates, national Quality Assurance Program isolates, and other environmental isolates gave different macrorestriction patterns. Clinical isolates from the southwest of Western Australia collected in the 1980s and 1990s were also characterized using PFGE. The patterns generated were indistinguishable from those of the recent clinical isolates. PFGE showed that the dominant strain of S. schenckii causing sporotrichosis in Western Australia is present in hay, has caused sporotrichosis for at least 15 years, and is a different strain from the strains found in other parts of Australia.
authors.affiliation: Division of Microbiology and Infectious Diseases, PathWest, The Western Australian Centre for Pathology and Medical Research, Nedlands, WA 6909, Australia. Lyn.O'Reilly@health.wa.gov.au
authors.forename: L C
authors.initials: LC
authors.lastname: O'Reilly
authors.forename: S A
authors.initials: SA
authors.lastname: Altman
mesh_terms: D001315:Australia / Q000453:epidemiology; D016000:Cluster Analysis; D016172:DNA Fingerprinting; D004271:DNA, Fungal / Q000235:genetics; D015252:Deoxyribonucleases, Type II Site-Specific; D016521:Electrophoresis, Gel, Pulsed-Field; D006801:Humans; D017720:Molecular Epidemiology; D016533:Mycological Typing Techniques; D006109:Poaceae / Q000382:microbiology*; D012150:Polymorphism, Restriction Fragment Length; D013175:Sporothrix / Q000145:classification* / Q000235:genetics* / Q000302:isolation & purification; D013174:Sporotrichosis / Q000453:epidemiology / Q000382:microbiology*
chemical_list: D004271:DNA, Fungal; C041749:endodeoxyribonuclease SfiI; D015252:Deoxyribonucleases, Type II Site-Specific; C038565:GCGGCCGC-specific type II deoxyribonucleases