title: SNP@Domain: a web resource of single nucleotide polymorphisms (SNPs) within protein domain structures and sequences.
abstract: The single nucleotide polymorphisms (SNPs) in conserved protein regions have been thought to be strong candidates that alter protein functions. Thus, we have developed SNP@Domain, a web resource, to identify SNPs within human protein domains. We annotated SNPs from dbSNP with protein structure-based as well as sequence-based domains: (i) structure-based using SCOP and (ii) sequence-based using Pfam to avoid conflicts from two domain assignment methodologies. Users can investigate SNPs within protein domains with 2D and 3D maps. We expect this visual annotation of SNPs within protein domains will help scientists select and interpret SNPs associated with diseases. A web interface for the SNP@Domain is freely available at http://snpnavigator.net/ and from http://bioportal.net/.
authors.affiliation: National Genome Information Center (NGIC), Korea Research Institute of Bioscience and Biotechnology, 52 Eoeun-dong, Yuseong-guDaejeon 305-333, Korea.
authors.forename: Areum
authors.initials: A
authors.lastname: Han
authors.forename: Hyo Jin
authors.initials: HJ
authors.lastname: Kang
authors.forename: Yoobok
authors.initials: Y
authors.lastname: Cho
authors.forename: Sunghoon
authors.initials: S
authors.lastname: Lee
authors.forename: Young Joo
authors.initials: YJ
authors.lastname: Kim
authors.forename: Sungsam
authors.initials: S
authors.lastname: Gong
mesh_terms: D003196:Computer Graphics; D030562:Databases, Protein; D006801:Humans; D020407:Internet; D020641:Polymorphism, Single Nucleotide; D017434:Protein Structure, Tertiary / Q000235:genetics*; D020539:Sequence Analysis, Protein; D012984:Software; D014584:User-Computer Interface