title: Molecular dynamics simulation of a pressure-driven liquid transport process in a cylindrical nanopore using two self-adjusting plates.
abstract: Fluid transport through a nanopore in a membrane was investigated by using a novel molecular dynamics approach proposed in this study. The advantages of this method, relative to dual-control-volume grand-canonical molecular dynamics method, are that it eliminates disruptions to the system dynamics that are normally created by inserting or deleting particles from control volumes, and that it functions well for dense systems due to the number of particles being fixed in the system. Using the proposed method, we examined liquid argon transport through a nanopore by performing nonequilibrium molecular dynamics (NEMD) simulations under different back pressures. Validation of the code was performed by comparing simulation results to published experimental data obtained under equilibrium conditions. NEMD results show that constant pressure difference across the membrane was readily achieved.
authors.affiliation: Department of Mechanical Engineering, University of Alberta, Edmonton, Alberta T6G 2G8, Canada.
authors.forename: Cunkui
authors.initials: C
authors.lastname: Huang
authors.forename: K
authors.initials: K
authors.lastname: Nandakumar
authors.forename: Phillip Y K
authors.initials: PY
authors.lastname: Choi
authors.forename: Larry W
authors.initials: LW
authors.lastname: Kostiuk
mesh_terms: D003198:Computer Simulation; D004247:DNA / Q000737:chemistry; D008962:Models, Theoretical; D008968:Molecular Conformation; D049329:Nanostructures / Q000737:chemistry*; D021381:Protein Transport
chemical_list: D004247:DNA