Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network.
Serial NetEvolve is a flexible simulation program that generates DNA sequences evolved along a tree or recombinant network. It offers a user-friendly Windows graphical interface and a Windows or Linux simulator with a diverse selection of parameters to control the evolutionary model. Serial NetEvolve is a modification of the Treevolve program with the following additional features: simulation of serially-sampled data, the choice of either a clock-like or a variable rate model of sequence evolution, sampling from the internal nodes and the output of the randomly generated tree or network in our newly proposed NeTwick format.


BACKGROUND
From website http://biorg.cis.fiu.edu/SNE Contacts: giri@cis.fiu.edu


BACKGROUND
Manual and examples available from http://biorg.cis.fiu.edu/SNE.
Buendia
Patricia
P
Bioinformatics Research Group (BioRG), School of Computing and Information Science, Florida International University Miami, FL 33199, USA.
Narasimhan
Giri
G
D000465:Algorithms; D003196:Computer Graphics; D003198:Computer Simulation; D019143:Evolution, Molecular; D008957:Models, Genetic; D011995:Recombination, Genetic / Q000235:genetics*; D017422:Sequence Analysis, DNA / Q000379:methods*; D015398:Signal Transduction / Q000235:genetics; D012984:Software; D014584:User-Computer Interface