title: Electronic couplings in DNA pi-stacks: multistate effects.
abstract: In this study, we employ a multistate generalized Mulliken-Hush approach for calculating electronic couplings V(da) for charge transfer (CT) in DNA pi-stacks consisting of three, four, and five base pairs. In these systems the guanine donor and acceptor sites are separated by several (AT) pairs. The Hartree-Fock calculations of the stacks are carried out with the standard 6-31G basis sets. All possible superexchange pathways are accounted for. We examine electronic couplings estimated using the two-state and multistate models. Although for some systems the two-state scheme provides reasonable estimates of V(da), in general this simple model fails to reproduce the electronic couplings calculated with the multistate approach. The two-state treatment of pi-stacks with a tunneling gap less than 0.3 eV, for instance, GAAG and GAAAG, may lead to invalid estimates of V(da). We consider the dependence of V(da) on the length and composition of the bridge. The calculations show that V(da) is less sensitive to the arrangement of nucleobases in the bridge, as can be predicted on the basis of electronic couplings between adjacent base pairs.
authors.affiliation: Institució Catalana de Recerca i Estudis Avançats, Institute of Computational Chemistry, Universitat de Girona, 17071 Girona, Spain.
authors.forename: Alexander A
authors.initials: AA
authors.lastname: Voityuk
mesh_terms: D020029:Base Pairing; D004247:DNA / Q000737:chemistry*; D004563:Electrochemistry; D004581:Electronics; D007700:Kinetics; D009690:Nucleic Acid Conformation; D009838:Oligodeoxyribonucleotides / Q000737:chemistry*; D018911:Trinucleotide Repeats
chemical_list: D009838:Oligodeoxyribonucleotides; D004247:DNA