title: Activated signal transduction kinases frequently occupy target genes.
abstract: Cellular signal transduction pathways modify gene expression programs in response to changes in the environment, but the mechanisms by which these pathways regulate populations of genes under their control are not entirely understood. We present evidence that most mitogen-activated protein kinases and protein kinase A subunits become physically associated with the genes that they regulate in the yeast (Saccharomyces cerevisiae) genome. The ability to detect this interaction of signaling kinases with target genes can be used to more precisely and comprehensively map the regulatory circuitry that eukaryotic cells use to respond to their environment.
authors.affiliation: Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA 02142, USA.
authors.forename: Dmitry K
authors.initials: DK
authors.lastname: Pokholok
authors.forename: Julia
authors.initials: J
authors.lastname: Zeitlinger
authors.forename: Nancy M
authors.initials: NM
authors.lastname: Hannett
authors.forename: David B
authors.initials: DB
authors.lastname: Reynolds
authors.forename: Richard A
authors.initials: RA
authors.lastname: Young
mesh_terms: D048868:Adaptor Proteins, Signal Transducing / Q000378:metabolism; D002467:Cell Nucleus / Q000201:enzymology; D002843:Chromatin / Q000378:metabolism; D047369:Chromatin Immunoprecipitation; D054751:Cyclic AMP-Dependent Protein Kinase Catalytic Subunits; D017868:Cyclic AMP-Dependent Protein Kinases / Q000378:metabolism*; D004789:Enzyme Activation; D015966:Gene Expression Regulation, Fungal; D005800:Genes, Fungal; D020935:MAP Kinase Signaling System; D020928:Mitogen-Activated Protein Kinases / Q000378:metabolism*; D009997:Osmotic Pressure; D011401:Promoter Regions, Genetic; D011494:Protein Kinases / Q000378:metabolism; D011498:Protein Precursors / Q000494:pharmacology; D012269:Ribosomal Proteins / Q000235:genetics; D012441:Saccharomyces cerevisiae / Q000201:enzymology* / Q000235:genetics* / Q000502:physiology; D029701:Saccharomyces cerevisiae Proteins / Q000235:genetics / Q000378:metabolism / Q000494:pharmacology; D015398:Signal Transduction; D014157:Transcription Factors / Q000378:metabolism; D014158:Transcription, Genetic
chemical_list: D048868:Adaptor Proteins, Signal Transducing; D002843:Chromatin; C048632:MF(ALPHA)1 protein, S cerevisiae; D011498:Protein Precursors; D012269:Ribosomal Proteins; C080321:STE5 protein, S cerevisiae; D029701:Saccharomyces cerevisiae Proteins; D014157:Transcription Factors; D011494:Protein Kinases; D054751:Cyclic AMP-Dependent Protein Kinase Catalytic Subunits; D017868:Cyclic AMP-Dependent Protein Kinases; C457179:TPK2 protein, S cerevisiae; C509333:Tpk3 protein, S cerevisiae; C075580:FUS3 protein, S cerevisiae; C088589:HOG1 protein, S cerevisiae; D020928:Mitogen-Activated Protein Kinases