title: Determination of anisotropic optical constants and surface coverage of molecular films using polarized visible ATR spectroscopy. Application to adsorbed cytochrome c films.
abstract: This article describes a method to determine the anisotropic optical constants and surface coverage of molecular films using polarized attenuated total reflectance (ATR) absorbance measurements. We have extended the transfer-matrix formalism to describe birefringent and dichroic films in ATR geometries and have combined it with an iterative numerical procedure to determine the anisotropic values of both the real (n) and imaginary (k) parts of the complex refractive index of the film under investigation. Anisotropic values of the imaginary part of the refractive index (k) allow for the determination of the surface coverage and one order parameter of the film. To illustrate this approach, we have used cytochrome c (cyt c) protein films adsorbed to glass and indium tin oxide (ITO) surfaces. Experimental results show that cyt c films on these surfaces, which were formed under identical conditions, have significant differences in their surface coverages (11.2 +/- 0.4 pmol/cm(2) on glass and 21.7 +/- 0.9 pmol/cm(2) on ITO); however, their order parameters <cos(2)theta> are similar (0.30 +/- 0.02 on glass and 0.36 +/- 0.04 on ITO).
authors.affiliation: Department of Chemistry, University of Arizona, Tucson, Arizona 85721, USA.
authors.forename: Anne F
authors.initials: AF
authors.lastname: Runge
authors.forename: Nicole C
authors.initials: NC
authors.lastname: Rasmussen
authors.forename: S Scott
authors.initials: SS
authors.lastname: Saavedra
authors.forename: Sergio B
authors.initials: SB
authors.lastname: Mendes
mesh_terms: D000327:Adsorption; D000818:Animals; D016880:Anisotropy; D045304:Cytochromes c / Q000737:chemistry*; D006736:Horses; D008567:Membranes, Artificial; D012680:Sensitivity and Specificity; D013057:Spectrum Analysis / Q000379:methods; D013499:Surface Properties
chemical_list: D008567:Membranes, Artificial; D045304:Cytochromes c