Ab initio study of the ionization of the DNA bases: ionization potentials and excited states of the cations.
The ionization of the four DNA bases is investigated by means of ab initio calculations. Accurate values of the gas-phase vertical and adiabatic ionization potentials (IP) are obtained at the MP2/6-31G(2d(0.8,alpha(d)),p) level of theory. The need of introducing extra polarization to the standard 6-31G(d,p) basis set is demonstrated by test calculations and an optimal value of alpha(d) = 0.1 is obtained. Ionization to electronically excited radical cations is also considered. The low-lying excited states of the cations are characterized for the first time. The topology of the corresponding potential energy surfaces is qualitatively described in terms of the stationary points (minima and saddle points) located on these surfaces. A conical intersection is characterized for the first time on the ground-state potential energy surface of all cations. It arises from the crossing of the adiabatic surfaces of the ground and first excited state at planar geometries. A nonplanar minimum is observed for the cytosine cation only. The geometry and electronic changes occurring along these surfaces are analyzed, leading to a comparison between the different nucleobase cations. The study of larger ionized systems related to DNA is rendered possible thanks to the optimized medium size basis set proposed in this work, as exemplified by the calculation of the IP of a stacked dimer of guanines.
Cauët
Emilie
E
Service de Chimie Quantique et Photophysique, Université Libre de Bruxelles, CP 160/09, 50 Avenue F. D. Roosevelt, B-1050 Bruxelles, Belgium.
Dehareng
Dominique
D
Liévin
Jacques
J
D003198:Computer Simulation; D004247:DNA / Q000737:chemistry*; D004583:Electrons; D005609:Free Radicals / Q000737:chemistry; D007477:Ions / Q000737:chemistry; D008958:Models, Molecular; D008968:Molecular Conformation; D011687:Purines / Q000737:chemistry*; D011743:Pyrimidines / Q000737:chemistry*
D005609:Free Radicals; D007477:Ions; D011687:Purines; D011743:Pyrimidines; D004247:DNA