title: Electronic and vibrational second-order nonlinear optical properties of protein secondary structural motifs.
abstract: A perturbation theory approach was developed for predicting the vibrational and electronic second-order nonlinear optical (NLO) polarizabilities of materials and macromolecules comprised of many coupled chromophores, with an emphasis on common protein secondary structural motifs. The polarization-dependent NLO properties of electronic and vibrational transitions in assemblies of amide chromophores comprising the polypeptide backbones of proteins were found to be accurately recovered in quantum chemical calculations by treating the coupling between adjacent oscillators perturbatively. A novel diagrammatic approach was developed to provide an intuitive visual means of interpreting the results of the perturbation theory calculations. Using this approach, the chiral and achiral polarization-dependent electronic SHG, isotropic SFG, and vibrational SFG nonlinear optical activities of protein structures were predicted and interpreted within the context of simple orientational models.
authors.affiliation: Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, USA.
authors.forename: John M
authors.initials: JM
authors.lastname: Perry
authors.forename: Andrew J
authors.initials: AJ
authors.lastname: Moad
authors.forename: Nathan J
authors.initials: NJ
authors.lastname: Begue
authors.forename: Ronald D
authors.initials: RD
authors.lastname: Wampler
authors.forename: Garth J
authors.initials: GJ
authors.lastname: Simpson
mesh_terms: D000465:Algorithms; D000595:Amino Acid Sequence; D004583:Electrons; D007536:Isomerism; D008956:Models, Chemical; D008969:Molecular Sequence Data; D017711:Nonlinear Dynamics; D017433:Protein Structure, Secondary; D011506:Proteins / Q000737:chemistry*
chemical_list: D011506:Proteins