title: First restriction and genetic mapping of the genomic DNA of urease-positive thermophilic campylobacters (UPTC), and small restriction fragment sequencing.
abstract: A restriction and genetic map of urease-positive thermophilic campylobacter (UPTC) CF89-12 genome DNA is constructed using a pulsed-field gel electrophoresis procedure after digestion with SalI and SmaI and Southern blot hybridisation. Each of the six gene fragments (flaA, glyA, lysS, recA, sodB and ureAB) selected are mapped in only a fragment on the restriction map. Three DNA fragments for rrn operon probes are mapped in multiple regions on the map. When two SmaI-digested neighbouring small fragments hybridised with rrn probes are cloned and sequenced, a total sequence length of 7487 bp is determined. In the sequence, part of the pnp gene (734 bp) bearing a p-independent transcriptional termination region, a cluster of five tRNA genes including the putative promoter region, a hypothetical Cj0171-like 507-bp sequence containing an internal termination codon, and a part of the rrn operon including the putative promoter region (4700 bp) are identified. The 507 bp sequence carried both putative transcriptional promoter sequences, including a ribosome binding site upstream of the ATG start codon and a characteristic G9 structure, and a possible p-independent transcriptional termination region. A hypothetical Cj0170-like 204-bp sequence containing an internal termination codon also occurred, overlapping partly with the Cj0171-like sequence. Based on nucleotide sequence alignment analysis between the UPTC rrn operon examined here and the previously reported one, two different 16S-23S ribosomal DNA (rDNA) internal spacer regions are shown to exist.
authors.affiliation: Laboratory of Molecular Biology, School of Environmental Health Sciences, Azabu University, Sagamihara, Japan.
authors.forename: T
authors.initials: T
authors.lastname: Aritomi
authors.forename: T
authors.initials: T
authors.lastname: Sekizuka
authors.forename: R
authors.initials: R
authors.lastname: Imamaki
authors.forename: O
authors.initials: O
authors.lastname: Murayama
authors.forename: B C
authors.initials: BC
authors.lastname: Millar
authors.forename: J E
authors.initials: JE
authors.lastname: Moore
authors.forename: M
authors.initials: M
authors.lastname: Matsuda
mesh_terms: D001483:Base Sequence; D002167:Campylobacter / Q000235:genetics*; D002874:Chromosome Mapping / Q000379:methods; D002876:Chromosomes, Bacterial / Q000235:genetics; D003001:Cloning, Molecular / Q000379:methods; D003062:Codon / Q000235:genetics; D004269:DNA, Bacterial / Q000235:genetics*; D005798:Genes, Bacterial / Q000235:genetics; D016680:Genome, Bacterial / Q000235:genetics; D011544:Pseudogenes / Q000235:genetics; D015183:Restriction Mapping / Q000379:methods
chemical_list: D003062:Codon; D004269:DNA, Bacterial