title: Efficient expression of the 15-kDa form of infectious pancreatic necrosis virus VP5 by suppression of a UGA codon.
abstract: Infectious pancreatic necrosis virus (IPNV), a member of the Birnaviridae family, encodes a nonstructural VP5 protein from a small open reading frame (ORF), which overlaps with a major ORF encoding pVP2, VP4 and VP3 proteins. In majority of the Sp strains of IPNV sequenced to date, VP5 gene codes for a 15-kDa protein. However, we have shown that in highly virulent strains, there is a premature in-frame stop codon (UGA) at nucleotide (nt) position 427, (preceding the 15-kDa stop codon at nt position 511) which could encode a 12-kDa protein. Using reverse genetics, we recovered recombinant rNVI15, rNVI15-15K and rNVI15-DeltaVP5 viruses (which could encode 12 or 15-kDa VP5 or lack the expression of VP5, respectively) and demonstrated that VP5 is dispensable for viral replication in vivo but is not involved in virulence (Santi, N., Song, H., Vakharia, V. N., Evensen, Ø., 2005a. Infectious pancreatic necrosis virus VP5 is dispensable for virulence and persistence. J. Virol. 79, 9206-9216). Here, we utilized these viruses to investigate the gene expression of VP5 in vitro. Our results indicate that a 15-kDa VP5 is produced in rNVI15-infected cells, albeit at lower levels than in rNVI15-15K-infected cells, suggesting that the opal stop codon at nt 427 is suppressed. Furthermore, to examine translational suppression of the opal stop codon in VP5 gene, we constructed plasmids containing VP5-specific sequence and employed a yeast-based bicistronic dual-luciferase reporter system (Harger, J.W., Dinman, J.D., 2003. An in vivo dual-luciferase assay system for studying translational recoding in the yeast Saccharomyces cerevisiae. RNA 9, 1019-1024). Our results demonstrate that the VP5 sequence (with or without a stop codon) yielded approximately 13% termination suppression and the efficiency is directly related to the base immediately 3' of the termination codon, C>A>U>G.
authors.affiliation: Center for Biosystems Research, University of Maryland Biotechnology Institute, College Park, MD 20742, USA.
authors.forename: Haichen
authors.initials: H
authors.lastname: Song
authors.forename: Jennifer L
authors.initials: JL
authors.lastname: Baxter-Roshek
authors.forename: Jonathan D
authors.initials: JD
authors.lastname: Dinman
authors.forename: Vikram N
authors.initials: VN
authors.lastname: Vakharia
mesh_terms: D000818:Animals; D015153:Blotting, Western; D002460:Cell Line; D018389:Codon, Nonsense / Q000235:genetics*; D015870:Gene Expression; D017930:Genes, Reporter; D018061:Infectious pancreatic necrosis virus / Q000235:genetics*; D008156:Luciferases / Q000096:biosynthesis / Q000235:genetics; D014176:Protein Biosynthesis; D012441:Saccharomyces cerevisiae / Q000235:genetics / Q000378:metabolism; D012474:Salmon; D013489:Suppression, Genetic / Q000502:physiology*; D017361:Viral Nonstructural Proteins / Q000096:biosynthesis* / Q000235:genetics / Q000502:physiology
chemical_list: D018389:Codon, Nonsense; D017361:Viral Nonstructural Proteins; D008156:Luciferases