title: Validation of rt-PCR assays for molecular characterization of porcine teschoviruses and enteroviruses.
abstract: Porcine enteroviruses (PEVs) and teschoviruses (PTVs) are described as causative agents of neurological disorders, fertility disorders and dermal lesions of swine. Difficulties in the serological detection of these viruses may lead to a significant underestimation of infections with clinical symptoms. With the recent availability of genome sequence data for all the serotypes, molecular diagnosis is a possibility. The present study describes a new approach to molecular 'serotyping' of PTVs and PEV-B viruses, involving the amplification and sequencing of a genomic fragment of the VP1 coding region. A molecular characterization of Italian entero-teschovirus isolates was performed using a set of previously published and newly designed polymerase chain reaction primers. A total of 33 porcine isolates and 10 reference strains were analysed. Porcine enterovirus-B samples were first diagnosed as positive for enterovirus by amplification of the 5'-non-translated region. Samples were then typed by amplification and sequencing of a portion of the VP1 coding region. Porcine enterovirus-A and PTVs were detected by a published assay in the 5'-NC region that allows them to be differentiated according to the size of amplification product, using the same set of primers. For serotype characterization of PTV, we evaluated four different regions: the N terminus of the capsid protein VP2, the region encoding for RNA-dependent RNA polymerase, and the capsid VP1 and VP4 regions. The newly designed primers in the VP1 region was proved to be broad in range and suitable for serotype assessment and therefore constitute a useful diagnostic tool for molecular diagnosis of porcine teschovirus/enterovirus strains and for the study of molecular epidemiology and evolution of these viruses.
authors.affiliation: Department of Environment and Primary Prevention, Istituto Superiore di Sanità, Rome, Italy. giuseppina.larosa@iss.it
authors.forename: G
authors.initials: G
authors.lastname: La Rosa
authors.forename: M
authors.initials: M
authors.lastname: Muscillo
authors.forename: A
authors.initials: A
authors.lastname: Di Grazia
authors.forename: S
authors.initials: S
authors.lastname: Fontana
authors.forename: M
authors.initials: M
authors.lastname: Iaconelli
authors.forename: M
authors.initials: M
authors.lastname: Tollis
mesh_terms: D000818:Animals; D004279:DNA, Viral / Q000032:analysis; D003937:Diagnosis, Differential; D004769:Enterovirus Infections / Q000175:diagnosis / Q000662:veterinary*; D004771:Enteroviruses, Porcine / Q000145:classification / Q000302:isolation & purification*; D010802:Phylogeny; D010849:Picornaviridae / Q000145:classification / Q000302:isolation & purification*; D010850:Picornaviridae Infections / Q000175:diagnosis / Q000662:veterinary*; D020133:Reverse Transcriptase Polymerase Chain Reaction / Q000592:standards / Q000662:veterinary*; D012680:Sensitivity and Specificity; D013552:Swine; D013553:Swine Diseases / Q000175:diagnosis*
chemical_list: D004279:DNA, Viral