title: Comparison of antigenic sites of the envelope glycoprotein of the Iranian isolate of human T-cell leukemia virus type 1 with different subtypes of the virus.
abstract: OBJECTIVE
  Human T-cell leukemia virus type 1 (HTLV-1) is an enveloped retrovirus, which is associated with a T-cell malignancy known as adult T-cell leukemia (ATL). Variation in the HTLV-1 envelope nucleotide sequence has been extensively documented and has been used to classify HTLV-1 isolates into different subtypes. The virus occurs in at least 3 subtypes, which have been named A, B, and C. We conducted this study to compare the antigenic proprieties of the Iranian isolate of HTLV-1 with the homologous region of different subtypes of the virus.
  
  
  METHODS
  This study took place in the Department of Biology, College of Sciences, Shiraz University, Iran in 2005. The predicted antigenic sites and secondary structure of the envelope glycoprotein of HTLV-1, present in Iran, have been compared with the antigenic sites and secondary structure of the homologous domains in subtypes A, B, C of the virus. To predict the epitopes of glycoproteins, 21 different scales were used.
  
  
  RESULTS
  The number of helices in the Iranian isolate was equal to the number of these regions in all 3 subtypes, but the number of beta-sheets was more than other viruses. One potential glycosylation site, on all these studied envelope glycoproteins, was predicted. Antigenic sites in the Iranian isolate were almost similar to subtype A of the virus and the Iranian isolate of HTLV-1 may be belongs to subtype A.
  
  
  CONCLUSIONS
  Our results indicate the similarities and differences between the Iranian and other subtypes of HTLV-1. Antigenic sites represent potential candidates for use in a peptide vaccine against HTLV-1 glycoproteins and since most of the properties of a particular protein depend on its structural properties, this type of study can help in better understanding of HTLV-1 isolates present in Iran.
authors.affiliation: Department of Biology, College of Sciences, Shiraz University, Shiraz 71454, Iran. mohabatkar@susc.ac.ir
authors.forename: Hassan
authors.initials: H
authors.lastname: Mohabatkar
authors.forename: Sahar
authors.initials: S
authors.lastname: Sadeghi
mesh_terms: D000914:Antibodies, Viral / Q000032:analysis* / Q000235:genetics / Q000276:immunology; D001666:Binding Sites, Antibody / Q000235:genetics / Q000276:immunology*; D006023:Glycoproteins / Q000032:analysis*; D015368:Human T-lymphotropic virus 1 / Q000235:genetics* / Q000276:immunology; D006801:Humans; D007492:Iran; D015459:Leukemia-Lymphoma, Adult T-Cell / Q000235:genetics* / Q000276:immunology; D015682:Retroviridae Proteins, Oncogenic / Q000032:analysis* / Q000235:genetics / Q000276:immunology; D014759:Viral Envelope Proteins / Q000032:analysis*
chemical_list: D000914:Antibodies, Viral; D006023:Glycoproteins; D015682:Retroviridae Proteins, Oncogenic; D014759:Viral Envelope Proteins