title: Variations of bacterial community structure in flooded paddy soil contaminated with herbicide quinclorac.
abstract: The denaturing gradient gel electrophoresis (DGGE) method was applied to determine the relative genetic complexity of microbial communities in flooded paddy soil treated with herbicide quinclorac (3,7-dichloro-8-quinoline-carboylic acid). The results obtained showed a significant effect of quinclorac on the development of bacterial populations in soils contaminated with different concentrations of the herbicide at the early time after application. In general, however, the number of populations of the same soil sample treated with the same concentration of the quinclorac differed obviously with increasing incubation time within the early 8 weeks. The scale of differences in banding patterns-showed that the microbial community structures of the quinclorac-treated and non-quinclorac-treated soils were not significantly different after 21 weeks of incubation. Quantification, as demonstrated in this paper, was studied by establishing dose-response relationships. Significant pattern variations were quantified. Prominent DGGE bands were excised, cloned and sequenced to gain insight into the identities of predominant bacterial populations. The majority of DGGE band sequences were related to bacterial genera Clostridium, Sphingobacterium, Xanthomonas and Rhodococcus.
authors.affiliation: Institute of Microbiology, College of Life Sciences, Zhejiang University, PR China.
authors.forename: Zhenmei
authors.initials: Z
authors.lastname: Lü
authors.forename: Hang
authors.initials: H
authors.lastname: Min
authors.forename: Na
authors.initials: N
authors.lastname: Li
authors.forename: Tiejuan
authors.initials: T
authors.lastname: Shao
authors.forename: Yangfang
authors.initials: Y
authors.lastname: Ye
mesh_terms: D001419:Bacteria / Q000187:drug effects* / Q000254:growth & development; D001483:Base Sequence; D003013:Clostridium / Q000145:classification / Q000187:drug effects / Q000254:growth & development; D004269:DNA, Bacterial / Q000737:chemistry*; D004587:Electrophoresis, Agar Gel / Q000379:methods; D006540:Herbicides / Q000032:analysis / Q000494:pharmacology*; D008969:Molecular Sequence Data; D011804:Quinolines / Q000032:analysis / Q000494:pharmacology*; D012240:Rhodococcus / Q000145:classification / Q000187:drug effects / Q000254:growth & development; D012988:Soil Microbiology; D012989:Soil Pollutants / Q000032:analysis / Q000494:pharmacology*; D045249:Sphingobacterium / Q000145:classification / Q000187:drug effects / Q000254:growth & development; D013997:Time Factors; D014974:Xanthomonas / Q000145:classification / Q000187:drug effects / Q000254:growth & development
chemical_list: D004269:DNA, Bacterial; D006540:Herbicides; D011804:Quinolines; D012989:Soil Pollutants; C489048:quinclorac