title: SYBR Green real-time reverse transcription-polymerase chain reaction assay for the generic detection of coronaviruses.
abstract: Coronaviruses are etiologic agents of respiratory and enteric diseases in humans and in animals. In this study, a one-step real-time reverse transcription-polymerase chain reaction (RT-PCR) assay based on SYBR Green chemistry and degenerate primers was developed for the generic detection of coronaviruses. The primers, designed in the open reading frame 1b, enabled the detection of 32 animal coronaviruses including strains of canine coronavirus, feline coronavirus, transmissible gastroenteritis virus (TGEV), bovine coronavirus (BCoV), murine hepatitis virus (MHV) and infectious bronchitis virus (IBV). A specific amplification was also observed with the human coronaviruses (HCoV) HCoV-NL63, HCoV-OC43, HCoV-229E and severe acute respiratory syndrome coronavirus (SARS-CoV). The real-time RT-PCR detected down to 10 cRNA copies from TGEV, BCoV, SARS-CoV and IBV. In addition, the assay exhibited a high sensitivity and specificity on clinical samples from different animal species. The developed assay represents a potential tool for laboratory diagnostics and for detecting still uncharacterized coronaviruses.
authors.affiliation: Department of Virology, National Veterinary Institute, Uppsala, Sweden.
authors.forename: S
authors.initials: S
authors.lastname: Escutenaire
authors.forename: N
authors.initials: N
authors.lastname: Mohamed
authors.forename: M
authors.initials: M
authors.lastname: Isaksson
authors.forename: P
authors.initials: P
authors.lastname: Thorén
authors.forename: B
authors.initials: B
authors.lastname: Klingeborn
authors.forename: S
authors.initials: S
authors.lastname: Belák
authors.forename: M
authors.initials: M
authors.lastname: Berg
authors.forename: J
authors.initials: J
authors.lastname: Blomberg
mesh_terms: D000818:Animals; D001483:Base Sequence; D052160:Benzothiazoles; D003332:Coronaviridae / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification; D017931:DNA Primers / Q000235:genetics; D004279:DNA, Viral / Q000235:genetics; D003959:Diamines; D005456:Fluorescent Dyes; D006801:Humans; D008969:Molecular Sequence Data; D009930:Organic Chemicals; D010802:Phylogeny; D011804:Quinolines; D018075:RNA, Complementary / Q000235:genetics; D012367:RNA, Viral / Q000235:genetics; D015203:Reproducibility of Results; D020133:Reverse Transcriptase Polymerase Chain Reaction / Q000379:methods* / Q000706:statistics & numerical data; D012680:Sensitivity and Specificity
chemical_list: D052160:Benzothiazoles; D017931:DNA Primers; D004279:DNA, Viral; D003959:Diamines; D005456:Fluorescent Dyes; D009930:Organic Chemicals; D011804:Quinolines; D018075:RNA, Complementary; D012367:RNA, Viral; C098022:SYBR Green I