title: Assembly and selective "in synthesis" labeling of quenched fluorogenic protease substrates.
abstract: Because impaired cellular protease activities are linked to many diseases, such as cancer, inflammation, neurodegeneration, and infection, internally quenched fluorescent peptides have recently been developed as tools for analyzing the specificities of these enzymes. Here we report convenient and cost-effective approaches for the selective "in synthesis" assembly of such substrate peptides for protease assays. Fluorescein and Dabcyl groups were covalently and selectively attached during synthesis to epsilon-amino groups of internal lysines. Functionality was then tested by digestion with leucine aminopeptidase, chymotrypsin, and microsomal vesicles. All peptides proved to be appropriate substrates of the enzymes tested and of the endogenous peptidases in the microsomal vesicles. In summary, we describe an innovative and cheap method to develop completely functional quenched fluorescent peptides that are usable in specific detection of individual proteases, in particular aminopeptidases, in both in vitro and in vivo systems.
authors.affiliation: Laboratory of Biochemistry, Regina Elena Institute CRS, 00158 Rome, Italy.
authors.forename: Alberto
authors.initials: A
authors.lastname: Chersi
authors.forename: Silvia
authors.initials: S
authors.lastname: Ferracuti
authors.forename: Giuliana
authors.initials: G
authors.lastname: Falasca
authors.forename: Richard H
authors.initials: RH
authors.lastname: Butler
authors.forename: Doriana
authors.initials: D
authors.lastname: Fruci
mesh_terms: D000595:Amino Acid Sequence; D005456:Fluorescent Dyes / Q000138:chemical synthesis* / Q000378:metabolism*; D007700:Kinetics; D008969:Molecular Sequence Data; D010447:Peptide Hydrolases / Q000378:metabolism*; D013379:Substrate Specificity
chemical_list: D005456:Fluorescent Dyes; D010447:Peptide Hydrolases