Bio3d: an R package for the comparative analysis of protein structures.
An automated procedure for the analysis of homologous protein structures has been developed. The method facilitates the characterization of internal conformational differences and inter-conformer relationships and provides a framework for the analysis of protein structural evolution. The method is implemented in bio3d, an R package for the exploratory analysis of structure and sequence data.


BACKGROUND
The bio3d package is distributed with full source code as a platform-independent R package under a GPL2 license from: http://mccammon.ucsd.edu/~bgrant/bio3d/
Grant
Barry J
BJ
Department of Chemistry and Biochemistry, University of California, San Diego La Jolla, CA 92093, USA. bgrant@mccammon.ucsd.edu
Rodrigues
Ana P C
AP
ElSawy
Karim M
KM
McCammon
J Andrew
JA
Caves
Leo S D
LS
D000595:Amino Acid Sequence; D003198:Computer Simulation; D020407:Internet; D008956:Models, Chemical; D008958:Models, Molecular; D008969:Molecular Sequence Data; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry*; D020539:Sequence Analysis, Protein / Q000379:methods*; D012984:Software; D014584:User-Computer Interface
D011506:Proteins