Real-time monitoring of the oxalate decarboxylase reaction and probing hydron exchange in the product, formate, using fourier transform infrared spectroscopy.
Oxalate decarboxylase converts oxalate to formate and carbon dioxide and uses dioxygen as a cofactor despite the reaction involving no net redox change. We have successfully used Fourier transform infrared spectroscopy to monitor in real time both substrate consumption and product formation for the first time. The assignment of the peaks was confirmed using [(13)C]oxalate as the substrate. The K(m) for oxalate determined using this assay was 3.8-fold lower than that estimated from a stopped assay. The infrared assay was also capable of distinguishing between oxalate decarboxylase and oxalate oxidase activity by the lack of formate being produced by the latter. In D(2)O, the product with oxalate decarboxylase was C-deuterio formate rather than formate, showing that the source of the hydron was solvent as expected. Large solvent deuterium kinetic isotope effects were observed on V(max) (7.1 +/- 0.3), K(m) for oxalate (3.9 +/- 0.9), and k(cat)/K(m) (1.8 +/- 0.4) indicative of a proton transfer event during a rate-limiting step. Semiempirical quantum mechanical calculations on the stability of formate-derived species gave an indication of the stability and nature of a likely enzyme-bound formyl radical catalytic intermediate. The capability of the enzyme to bind formate under conditions in which the enzyme is known to be active was determined by electron paramagnetic resonance. However, no enzyme-catalyzed exchange of the C-hydron of formate was observed using the infrared assay, suggesting that a formyl radical intermediate is not accessible in the reverse reaction. This restricts the formation of potentially harmful radical intermediates to the forward reaction.
Muthusamy
Mylrajan
M
Biological Chemistry Department, John Innes Centre, Norwich Research Park, Colney, Norwich NR4 7UH, United Kingdom.
Burrell
Matthew R
MR
Thorneley
Roger N F
RN
Bornemann
Stephen
S
D001412:Bacillus subtilis / Q000201:enzymology; D002021:Buffers; D002245:Carbon Dioxide / Q000737:chemistry; D002262:Carboxy-Lyases / Q000737:chemistry*; D002384:Catalysis; D017666:Deuterium Oxide / Q000737:chemistry; D005561:Formates / Q000737:chemistry*; D020100:Hydrogels; D006863:Hydrogen-Ion Concentration; D015394:Molecular Structure; D010088:Oxidoreductases / Q000737:chemistry; D010100:Oxygen / Q000737:chemistry; D011102:Polyhydroxyethyl Methacrylate / Q000031:analogs & derivatives* / Q000737:chemistry; D017550:Spectroscopy, Fourier Transform Infrared / Q000379:methods*; D013379:Substrate Specificity
D002021:Buffers; D005561:Formates; D020100:Hydrogels; C000257:polyhydroxyethyl methacrylate hydrogels; D002245:Carbon Dioxide; D011102:Polyhydroxyethyl Methacrylate; D010088:Oxidoreductases; D002262:Carboxy-Lyases; C021915:oxalate decarboxylase; D017666:Deuterium Oxide; D010100:Oxygen