title: Mechanisms of transcription activation exerted by GadX and GadW at the gadA and gadBC gene promoters of the glutamate-based acid resistance system in Escherichia coli.
abstract: In Escherichia coli the gad system protects the cell from the extreme acid stress encountered during transit through the host stomach. The structural genes gadA, gadB, and gadC encode two glutamate decarboxylase isoforms and a glutamate/gamma-aminobutyrate (GABA) antiporter, respectively. Glutamate decarboxylation involves both proton consumption and production of GABA, a neutral compound which is finally exported via the GadC antiporter. Regulation of gadA and gadBC transcription is very complex, involving several circuits controlling expression under different growth phase, medium, and pH conditions. In this study we found that the AraC-like activators GadX and GadW share the same 44-bp binding sites in the gadA and gadBC regulatory regions. The common binding sites are centered at 110.5 bp and 220.5 bp upstream of the transcriptional start points of the gadA and gadBC genes, respectively. At the gadA promoter this regulatory element overlaps one of the binding sites of the repressor H-NS. The DNA of the gadBC promoter has an intrinsic bend which is centered at position -121. These findings, combined with transcriptional regulation studies, may account for the two different mechanisms of transcriptional activation by GadX and GadW at the two promoters studied. We speculate that while at the gadA promoter GadX and GadW activate transcription by displacing H-NS via an antirepressor mechanism, at the gadBC promoter the mechanism of activation involves looping of the DNA sequence between the promoter and the activator binding site.
authors.affiliation: Istituto di Biologia e Patologia Molecolari, CNR, Italy.
authors.forename: Angela
authors.initials: A
authors.lastname: Tramonti
authors.forename: Michele
authors.initials: M
authors.lastname: De Canio
authors.forename: Isabel
authors.initials: I
authors.lastname: Delany
authors.forename: Vincenzo
authors.initials: V
authors.lastname: Scarlato
authors.forename: Daniela
authors.initials: D
authors.lastname: De Biase
mesh_terms: D000143:Acids; D017920:Antiporters / Q000235:genetics*; D051777:AraC Transcription Factor / Q000235:genetics*; D001483:Base Sequence; D048168:Escherichia coli K12 / Q000235:genetics / Q000502:physiology*; D029968:Escherichia coli Proteins / Q000235:genetics*; D005968:Glutamate Decarboxylase / Q000235:genetics*; D008565:Membrane Proteins / Q000235:genetics*; D008969:Molecular Sequence Data; D011401:Promoter Regions, Genetic; D014157:Transcription Factors; D015533:Transcriptional Activation
chemical_list: D000143:Acids; D017920:Antiporters; D051777:AraC Transcription Factor; D029968:Escherichia coli Proteins; C491226:GadC protein, E coli; C474648:GadW protein, E coli; C446316:GadX protein, E coli; D008565:Membrane Proteins; D014157:Transcription Factors; C121044:gadA protein, E coli; D005968:Glutamate Decarboxylase