title: Structure-based specificity mapping of secreted aspartic proteases of Candida parapsilosis, Candida albicans, and Candida tropicalis using peptidomimetic inhibitors and homology modeling.
abstract: Secreted aspartic proteases (Saps) of pathogenic Candida spp. represent a specific target for antifungal drug development. We synthesized a series of peptidomimetic inhibitors with different isosteric groups and modifications at individual positions and tested them with purified Saps from C. albicans (Sap2p), C. tropicalis (Sapt1p), and C. parapsilosis (Sapp1p). The kinetic parameters indicated that all three proteases prefer binding of inhibitors containing bulky hydrophobic residues between positions P3 and P3'. The most divergent specificity was found for Sapp1p. The sequence alignment of Sap2p, Sapt1p, and Sapp1p, and homology modeling of Sapp1p with the crystal structure of Sapt1p and the complex of Sap2p with a peptidomimetic inhibitor showed that the overall folds of Sap2p, Sapt1p, and Sapp1p are similar. However, the N- and C-terminal loops formed by disulfide bonds between residues 47-53 and 258-292 are significantly shorter in Sapp1p, and a unique insertion following Tyr 129 in Sapp1p results in the formation of a loop that can interact with inhibitor residues. These Sapp1p structural differences might lead to its altered susceptibility to inhibition.
authors.affiliation: Department of Protein Biochemistry, Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo n. 2, CZ-166 10 Prague 6, Czech Republic.
authors.forename: Filip
authors.initials: F
authors.lastname: Majer
authors.forename: Libuse
authors.initials: L
authors.lastname: Pavlícková
authors.forename: Pavel
authors.initials: P
authors.lastname: Majer
authors.forename: Martin
authors.initials: M
authors.lastname: Hradilek
authors.forename: Elena
authors.initials: E
authors.lastname: Dolejsí
authors.forename: Olga
authors.initials: O
authors.lastname: Hrusková-Heidingsfeldová
authors.forename: Iva
authors.initials: I
authors.lastname: Pichová
mesh_terms: D000595:Amino Acid Sequence; D016282:Aspartic Acid Endopeptidases / Q000737:chemistry / Q000187:drug effects*; D002175:Candida / Q000201:enzymology*; D007527:Isoenzymes / Q000737:chemistry / Q000187:drug effects; D008958:Models, Molecular; D008968:Molecular Conformation; D008969:Molecular Sequence Data; D011480:Protease Inhibitors / Q000138:chemical synthesis / Q000737:chemistry / Q000494:pharmacology*; D017434:Protein Structure, Tertiary; D017386:Sequence Homology, Amino Acid; D013237:Stereoisomerism; D013329:Structure-Activity Relationship; D013379:Substrate Specificity
chemical_list: D007527:Isoenzymes; D011480:Protease Inhibitors; D016282:Aspartic Acid Endopeptidases