title: Novel organization of catechol meta pathway genes in the nitrobenzene degrader Comamonas sp. JS765 and its evolutionary implication.
abstract: The catechol meta cleavage pathway is one of the central metabolic pathways for the degradation of aromatic compounds. A novel organization of the pathway genes, different from that of classical soil microorganisms, has been observed in Sphingomonas sp HV3 and Pseudomonas sp. DJ77. In a Comamonas sp. JS765, cdoE encoding catechol 2,3-dioxygenase shares a common ancestry only with tdnC of a Pseudomonas putida strain, while codG encoding 2-hydroxymuconic semialdehyde dehydrogenase shows a higher degree of similarity to those genes in classical bacteria. Located between cdoE and cdoG are several putative genes, whose functions are unknown. These genes are not found in meta pathway operons of other microorganisms with the exception of cdoX2, which is similar to cmpX in strain HV3. Therefore, the gene cluster in JS765 reveals a third type of gene organization of the meta pathway.
authors.affiliation: USDA-ARS, New England Plant, Soil, and Water Laboratory, Orono, ME 04469, USA, Zhongqi.He@ars.usda.gov
authors.forename: Zhongqi
authors.initials: Z
authors.lastname: He
authors.forename: Rebecca E
authors.initials: RE
authors.lastname: Parales
authors.forename: Jim C
authors.initials: JC
authors.lastname: Spain
authors.forename: Glenn R
authors.initials: GR
authors.lastname: Johnson
mesh_terms: D000595:Amino Acid Sequence; D001426:Bacterial Proteins / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism; D001673:Biodegradation, Environmental; D050557:Catechol 2,3-Dioxygenase / Q000235:genetics; D002396:Catechols / Q000378:metabolism*; D020585:Comamonas / Q000201:enzymology* / Q000235:genetics / Q000302:isolation & purification; D004269:DNA, Bacterial / Q000032:analysis; D019143:Evolution, Molecular; D005231:Fatty Acids, Unsaturated / Q000378:metabolism*; D006867:Hydrolases / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism; D008969:Molecular Sequence Data; D005810:Multigene Family; D009578:Nitrobenzenes / Q000378:metabolism*; D010088:Oxidoreductases / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism; D017422:Sequence Analysis, DNA
chemical_list: D001426:Bacterial Proteins; D002396:Catechols; D004269:DNA, Bacterial; D005231:Fatty Acids, Unsaturated; D009578:Nitrobenzenes; C002091:hydroxymuconic semialdehyde; C036077:nitrobenzene; D010088:Oxidoreductases; D050557:Catechol 2,3-Dioxygenase; D006867:Hydrolases; C034221:catechol