Applying Robust Directional Similarity based Clustering approach RDSC to classification of gene expression data.
Despite the fact that the classification of gene expression data from a cDNA microarrays has been extensively studied, nowadays a robust clustering method, which can estimate an appropriate number of clusters and be insensitive to its initialization has not yet been developed. In this work, a novel Robust Clustering approach, RDSC, based on the new Directional Similarity measure is presented. This new approach RDSC, which integrates the Directional Similarity based Clustering Algorithm, DSC, with the Agglomerative Hierarchical Clustering Algorithm, AHC, exhibits its robustness to initialization and its capability to determine the appropriate number of clusters reasonably. RDSC has been successfully employed to both artificial and benchmarking gene expression datasets. Our experimental results demonstrate its distinctive superiority over the conventional method Kmeans and the two typical directional clustering algorithms SPKmeans and moVMF.
Li
H X
HX
School of Information Engineering, Southern Yangtze University, Wuxi, China.
Wang
Shitong
S
Xiu
Yu
Y
D000465:Algorithms; D016000:Cluster Analysis; D030541:Databases, Genetic; D015870:Gene Expression; D020869:Gene Expression Profiling; D005800:Genes, Fungal; D020411:Oligonucleotide Array Sequence Analysis; D015003:Yeasts / Q000235:genetics