title: Bioinformatic and comparative localization of Rab proteins reveals functional insights into the uncharacterized GTPases Ypt10p and Ypt11p.
abstract: A striking characteristic of a Rab protein is its steady-state localization to the cytosolic surface of a particular subcellular membrane. In this study, we have undertaken a combined bioinformatic and experimental approach to examine the evolutionary conservation of Rab protein localization. A comprehensive primary sequence classification shows that 10 out of the 11 Rab proteins identified in the yeast (Saccharomyces cerevisiae) genome can be grouped within a major subclass, each comprising multiple Rab orthologs from diverse species. We compared the locations of individual yeast Rab proteins with their localizations following ectopic expression in mammalian cells. Our results suggest that green fluorescent protein-tagged Rab proteins maintain localizations across large evolutionary distances and that the major known player in the Rab localization pathway, mammalian Rab-GDI, is able to function in yeast. These findings enable us to provide insight into novel gene functions and classify the uncharacterized Rab proteins Ypt10p (YBR264C) as being involved in endocytic function and Ypt11p (YNL304W) as being localized to the endoplasmic reticulum, where we demonstrate it is required for organelle inheritance.
authors.affiliation: Institut für Biochemie, Swiss Federal Institute of Technology (ETH), CH-8093 Zürich, Switzerland.
authors.forename: Stéphanie
authors.initials: S
authors.lastname: Buvelot Frei
authors.forename: Peter B
authors.initials: PB
authors.lastname: Rahl
authors.forename: Maria
authors.initials: M
authors.lastname: Nussbaum
authors.forename: Benjamin J
authors.initials: BJ
authors.lastname: Briggs
authors.forename: Monica
authors.initials: M
authors.lastname: Calero
authors.forename: Stephanie
authors.initials: S
authors.lastname: Janeczko
authors.forename: Andrew D
authors.initials: AD
authors.lastname: Regan
authors.forename: Catherine Z
authors.initials: CZ
authors.lastname: Chen
authors.forename: Yves
authors.initials: Y
authors.lastname: Barral
authors.forename: Gary R
authors.initials: GR
authors.lastname: Whittaker
authors.forename: Ruth N
authors.initials: RN
authors.lastname: Collins
mesh_terms: D000818:Animals; D002478:Cells, Cultured; D019295:Computational Biology; D004721:Endoplasmic Reticulum / Q000378:metabolism; D005453:Fluorescence; D019204:GTP-Binding Proteins / Q000378:metabolism*; D049452:Green Fluorescent Proteins / Q000378:metabolism; D020730:Guanine Nucleotide Dissociation Inhibitors / Q000378:metabolism; D006367:HeLa Cells; D006801:Humans; D025341:Principal Component Analysis; D021381:Protein Transport; D011993:Recombinant Fusion Proteins / Q000378:metabolism; D012441:Saccharomyces cerevisiae / Q000166:cytology / Q000378:metabolism*; D029701:Saccharomyces cerevisiae Proteins / Q000378:metabolism*; D020691:rab GTP-Binding Proteins / Q000378:metabolism*
chemical_list: C086796:GDP dissociation inhibitor 1; D020730:Guanine Nucleotide Dissociation Inhibitors; D011993:Recombinant Fusion Proteins; D029701:Saccharomyces cerevisiae Proteins; C120216:Ypt10 protein, S cerevisiae; C468556:Ypt11 protein, S cerevisiae; D049452:Green Fluorescent Proteins; D019204:GTP-Binding Proteins; D020691:rab GTP-Binding Proteins