Are microRNAs located in genomic regions associated with cancer?
We report on the location of 283 miRNAs in the human genome in relation to copy number changes in three distinct types of tumours: prostate, bladder and colon. In prostate and colon tumours, we find miRNAs over-represented in regions with copy number gain and under-represented in regions with copy number loss. Surprisingly this pattern appears to be reversed in bladder cancer. We compared our miRNA copy number data to published miRNA expression data; unexpectedly, we did not find a statistically significant relationship between miRNA copy number and expression level. This suggests that miRNA expression is regulated through different mechanisms than mRNA expression.
Lamy
P
P
Bioinformatics Research Center (BiRC), University of Aarhus, Hoegh-Guldbergs Gade 10, Bldg 1090, Aarhus C, Denmark.
Andersen
C L
CL
Dyrskjøt
L
L
Tørring
N
N
Ørntoft
T
T
Wiuf
C
C
D003110:Colonic Neoplasms / Q000473:pathology; D018628:Gene Dosage; D020869:Gene Expression Profiling; D015894:Genome, Human; D006801:Humans; D008297:Male; D035683:MicroRNAs / Q000235:genetics*; D009369:Neoplasms / Q000235:genetics* / Q000473:pathology; D009693:Nucleic Acid Hybridization / Q000379:methods; D020411:Oligonucleotide Array Sequence Analysis; D011471:Prostatic Neoplasms / Q000473:pathology; D001749:Urinary Bladder Neoplasms / Q000235:genetics
D035683:MicroRNAs