Translation regulation of intron-containing genes in chloroplasts.
The paper provides a short description of the originally developed algorithm for searching of the conservative protein-RNA binding sites. The algorithm is applied to analyze chloroplast genes. The candidate protein-RNA binding sites were detected upstream of atpF, petB, clpP, psaA, psbA, and psbB genes in many chloroplasts of algae and plants. We suggest that some of these sites are involved in suppressing translation until splicing is completed.
Seliverstov
Alexander
A
Institute for Information Transmission Problems, Russian Academy of Sciences, B. Karetny, 19, Moscow 127994, Russia. slvstv@iitp.ru
Lyubetsky
Vassily
V
D000465:Algorithms; D001483:Base Sequence; D001665:Binding Sites; D002736:Chloroplasts / Q000235:genetics*; D002874:Chromosome Mapping / Q000379:methods*; D017124:Conserved Sequence / Q000235:genetics; D005786:Gene Expression Regulation / Q000235:genetics; D047668:Inteins / Q000235:genetics*; D008969:Molecular Sequence Data; D011485:Protein Binding; D014176:Protein Biosynthesis / Q000235:genetics*; D012333:RNA, Messenger / Q000235:genetics*; D016415:Sequence Alignment / Q000379:methods*; D017423:Sequence Analysis, RNA / Q000379:methods*
D012333:RNA, Messenger