title: Using chemical reaction network theory to discard a kinetic mechanism hypothesis.
abstract: Feinberg's chemical reaction network theory (CRNT) connects the structure of a biochemical reaction network to qualitative properties of the corresponding system of ordinary differential equations. No information about parameter values is needed. As such, it seems to be well suited for application in systems biology, where parameter uncertainty is predominant. However, its application in this area is rare. To demonstrate the potential benefits from its application, different reaction networks representing a single layer of the well-studied mitogen-activated protein kinase (MAPK) cascade are analysed. Recent results from Markevich et al. (2004) show that, unexpectedly, multilayered protein kinase cascades can exhibit multistationarity, even on a single cascade level. Using CRNT, we show that their assumption of a distributive mechanism for double phosphorylation and dephosphorylation is crucial for multistationarity on the single cascade level.
authors.affiliation: Lehrstuhl für Systemtheorie technischer Prozesse, University of Magdeburg, Germany. conradi@mpi-magdeburg.mpg.de
authors.forename: C
authors.initials: C
authors.lastname: Conradi
authors.forename: J
authors.initials: J
authors.lastname: Saez-Rodriguez
authors.forename: E D
authors.initials: ED
authors.lastname: Gilles
authors.forename: J
authors.initials: J
authors.lastname: Raisch
mesh_terms: D000465:Algorithms; D000818:Animals; D002468:Cell Physiological Phenomena; D003198:Computer Simulation; D006801:Humans; D007700:Kinetics; D020935:MAP Kinase Signaling System / Q000502:physiology*; D008657:Metabolic Clearance Rate; D020928:Mitogen-Activated Protein Kinases / Q000378:metabolism*; D008954:Models, Biological; D008956:Models, Chemical; D010766:Phosphorylation
chemical_list: D020928:Mitogen-Activated Protein Kinases