title: Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene.
abstract: Here we present a quantitative and predictive model of the transcriptional readout of the proximal 1.7 kb of the control region of the Drosophila melanogaster gene even skipped (eve). The model is based on the positions and sequence of individual binding sites on the DNA and quantitative, time-resolved expression data at cellular resolution. These data demonstrated new expression features, first reported here. The model correctly predicts the expression patterns of mutations in trans, as well as point mutations, insertions and deletions in cis. It also shows that the nonclassical expression of stripe 7 driven by this fragment is activated by the protein Caudal (Cad), and repressed by the proteins Tailless (Tll) and Giant (Gt).
authors.affiliation: Department of Applied Mathematics and Statistics, and Center for Developmental Genetics, Stony Brook University, Stony Brook, New York 11794-3600, USA.
authors.forename: Hilde
authors.initials: H
authors.lastname: Janssens
authors.forename: Shuling
authors.initials: S
authors.lastname: Hou
authors.forename: Johannes
authors.initials: J
authors.lastname: Jaeger
authors.forename: Ah-Ram
authors.initials: AR
authors.lastname: Kim
authors.forename: Ekaterina
authors.initials: E
authors.lastname: Myasnikova
authors.forename: David
authors.initials: D
authors.lastname: Sharp
authors.forename: John
authors.initials: J
authors.lastname: Reinitz
mesh_terms: D000818:Animals; D004268:DNA-Binding Proteins / Q000235:genetics / Q000378:metabolism; D029721:Drosophila Proteins / Q000235:genetics* / Q000378:metabolism; D004331:Drosophila melanogaster / Q000235:genetics*; D004742:Enhancer Elements, Genetic; D005786:Gene Expression Regulation; D018398:Homeodomain Proteins / Q000235:genetics* / Q000378:metabolism; D008957:Models, Genetic; D012097:Repressor Proteins / Q000235:genetics / Q000378:metabolism; D014157:Transcription Factors / Q000235:genetics* / Q000378:metabolism; D014158:Transcription, Genetic
chemical_list: D004268:DNA-Binding Proteins; D029721:Drosophila Proteins; D018398:Homeodomain Proteins; D012097:Repressor Proteins; C074090:TLL protein, Drosophila; D014157:Transcription Factors; C084564:cad protein, Drosophila; C052837:eve protein, Drosophila; C118475:gt protein, Drosophila