title: Integration of gel-based proteome data with pProRep.
abstract: pProRep is a web application integrating electrophoretic and mass spectral data from proteome analyses into a relational database. The graphical web-interface allows users to upload, analyse and share experimental proteome data. It offers researchers the possibility to query all previously analysed datasets and can visualize selected features, such as the presence of a certain set of ions in a peptide mass spectrum, on the level of the two-dimensional gel.
  
  
  BACKGROUND
  The pProRep package and instructions for its use can be downloaded from http://www.ptools.ua.ac.be/pProRep. The application requires a web server that runs PHP 5 (http://www.php.net) and MySQL. Some (non-essential) extensions need additional freely available libraries: details are described in the installation instructions.
authors.affiliation: Laboratory of Plant Physiology and Plant Biochemistry, University of Antwerp Groenenborgerlaan 171, B-2020 Antwerp, Belgium. kris.laukens@ua.ac.be
authors.forename: Kris
authors.initials: K
authors.lastname: Laukens
authors.forename: Rune
authors.initials: R
authors.lastname: Matthiesen
authors.forename: Filip
authors.initials: F
authors.lastname: Lemière
authors.forename: Eddy
authors.initials: E
authors.lastname: Esmans
authors.forename: Harry Van
authors.initials: HV
authors.lastname: Onckelen
authors.forename: Ole Nørregaard
authors.initials: ON
authors.lastname: Jensen
authors.forename: Erwin
authors.initials: E
authors.lastname: Witters
mesh_terms: D019295:Computational Biology / Q000379:methods*; D003628:Database Management Systems; D030541:Databases, Genetic; D030562:Databases, Protein; D015180:Electrophoresis, Gel, Two-Dimensional; D016247:Information Storage and Retrieval; D020407:Internet; D007477:Ions; D013058:Mass Spectrometry / Q000379:methods*; D010455:Peptides / Q000737:chemistry; D011381:Programming Languages; D020543:Proteome; D040901:Proteomics / Q000379:methods*; D012984:Software; D014584:User-Computer Interface
chemical_list: D007477:Ions; D010455:Peptides; D020543:Proteome