title: [Isolation and characterization of a new Pseudomonas strain against Phytophthora capsici].
abstract: One Pseudomonas strain GP72, which was against Phytophthora capsici, was isolated from green pepper rhizosphere in Jiangsu province. It had distinctively inhibitive effect on several kinds of pathogenic fungi; mostly of them are soilborne pathogens. Therefore, this strain may be used for an effective biocontrol strain in the crop protection. The morphological, biochemical and physiological characteristics, Biolog GN, G + C mol% content and 16S rDNA sequence analysis of this strain were studied. In comparison and conclusion of all the experimental data, GP72 is identified as Pseudomonas chlororaphis. The strain is single-cellular and motile by means of single polar flagellum. It was not able to accumulate ploy-beta-hydroxybutyrate. Compared to P. aureofaciens 30-84, the strain was able to survive at the concentration of 5% NaCl. It could strongly utilize 45 of 95 carbon-substrates; weakly utilize 6 of the whole carbon-substrates and never utilize 43 of the whole carbon-substrates resulting from analysis of Biolog GN, bearing the similarity probability of 98% with Pseudomonas chlororaphis and with the similarity index 0.72. The G + C content of the strain DNA was 65.1 mol% using the thermal denaturation method. A phylogenetic tree was constructed by comparing with the validly published 16S rDNA sequences of the related type strains from GenBank, using the Neighbor-Joining method of Saitou and Nei and the Clustal X program to do the multiple alignments. The tree topology was tested by a bootstrap analysis of 1000 samplings. The overall similarity value between strain GP72 and typical is the closest in the phylogenetic tree. For the latest taxonomical development has put genus Pseudomonas aureofaciens to the genus Pseudomonas chlororaphis, then it is appropriate to say that GP72 belongs to the genus Pseudomonas chlororaphis. This is the first time in China to report that a strain of Pseudomonas chlororaphis was isolated from green pepper rhizosphere, having a strong inhibitive effect on Phytophthora capsici and other soilborne pathogenic fungus. The other characteristics and the biocontrol mechanism are yet to be further studied.
authors.affiliation: School of Life Science & Biotechnology, Shanghai Jiaotong University, Shanghai 200240, China. yanjinghe106@yahoo.com.cn
authors.forename: Yan-jing
authors.initials: YJ
authors.lastname: He
authors.forename: Hai-ming
authors.initials: HM
authors.lastname: Liu
authors.forename: Hong-bo
authors.initials: HB
authors.lastname: Hu
authors.forename: Yu-quan
authors.initials: YQ
authors.lastname: Xu
authors.forename: Xue-hong
authors.initials: XH
authors.lastname: Zhang
mesh_terms: D001482:Base Composition / Q000235:genetics; D002212:Capsicum / Q000382:microbiology; D010572:Pest Control, Biological / Q000379:methods*; D010802:Phylogeny; D010838:Phytophthora / Q000254:growth & development*; D018517:Plant Roots / Q000382:microbiology; D011549:Pseudomonas / Q000145:classification / Q000235:genetics / Q000302:isolation & purification* / Q000502:physiology*; D012336:RNA, Ribosomal, 16S / Q000235:genetics
chemical_list: D012336:RNA, Ribosomal, 16S