title: Novel chemolithotrophic, thermophilic, anaerobic bacteria Thermolithobacter ferrireducens gen. nov., sp. nov. and Thermolithobacter carboxydivorans sp. nov.
abstract: Three thermophilic strains of chemolithoautotrophic Fe(III)-reducers were isolated from mixed sediment and water samples (JW/KA-1 and JW/KA-2(T): Calcite Spring, Yellowstone N.P., WY, USA; JW/JH-Fiji-2: Savusavu, Vanu Levu, Fiji). All were Gram stain positive rods (approximately 0.5 x 1.8 microm). Cells occurred singly or in V-shaped pairs, and they formed long chains in complex media. All utilized H(2) to reduce amorphous iron (III) oxide/hydroxide to magnetite at temperatures from 50 to 75 degrees C (opt. approximately 73 degrees C). Growth occurred within the pH(60C) range of 6.5-8.5 (opt. pH(60C) 7.1-7.3). Magnetite production by resting cells occurred at pH(60C) 5.5-10.3 (opt. 7.3). The iron (III) reduction rate was 1.3 mumol Fe(II) produced x h(-1) x ml(-1) in a culture with 3 x 10(7) cells, one of the highest rates reported. In the presence or absence of H(2), JW/KA-2(T) did not utilize CO. The G + C content of the genomic DNA of the type strain is 52.7 +/- 0.3 mol%. Strains JW/KA-1 and JW/KA-2(T) each contain two different 16S rRNA gene sequences. The 16S rRNA gene sequences from JW/KA-1, JW/KA-2(T), or JW/JH-Fiji-2 possessed >99% similarity to each other but also 99% similarity to the 16S rRNA gene sequence from the anaerobic, thermophilic, hydrogenogenic CO-oxidizing bacterium 'Carboxydothermus restrictus' R1. DNA-DNA hybridization between strain JW/KA-2(T) and strain R1(T) yielded 35% similarity. Physiological characteristics and the 16S rRNA gene sequence analysis indicated that the strains represent two novel species and are placed into the novel genus Thermolithobacter within the phylum 'Firmicutes'. In addition, the levels of 16S rRNA gene sequence similarity between the lineage containing the Thermolithobacter and well-established members of the three existing classes of the 'Firmicutes' is less than 85%. Therefore, Thermolithobacter is proposed to constitute the first genus within a novel class of the 'Firmicutes', Thermolithobacteria. The Fe(III)-reducing Thermolithobacter ferrireducens gen. nov., sp. nov. is designated as the type species with strain JW/KA-2(T) (ATCC 700985(T), DSM 13639(T)) as its type strain. Strain R1(T) is the type strain for the hydrogenogenic, CO-oxidizing Thermolithobacter carboxydivorans sp. nov. (DSM 7242(T), VKM 2359(T)).
authors.affiliation: Winogradsky Institute of Microbiology, Russian Academy of Sciences, Prospect 60-letiya Oktyabrya 7/2, 117312, Moscow, Russia.
authors.forename: T
authors.initials: T
authors.lastname: Sokolova
authors.forename: J
authors.initials: J
authors.lastname: Hanel
authors.forename: R U
authors.initials: RU
authors.lastname: Onyenwoke
authors.forename: A-L
authors.initials: AL
authors.lastname: Reysenbach
authors.forename: A
authors.initials: A
authors.lastname: Banta
authors.forename: R
authors.initials: R
authors.lastname: Geyer
authors.forename: J M
authors.initials: JM
authors.lastname: González
authors.forename: W B
authors.initials: WB
authors.lastname: Whitman
authors.forename: J
authors.initials: J
authors.lastname: Wiegel
mesh_terms: D000900:Anti-Bacterial Agents / Q000494:pharmacology; D001421:Bacteria, Anaerobic / Q000145:classification* / Q000187:drug effects / Q000235:genetics / Q000254:growth & development / Q000302:isolation & purification / Q000378:metabolism; D001482:Base Composition; D002248:Carbon Monoxide / Q000378:metabolism; D052837:Chemoautotrophic Growth; D004269:DNA, Bacterial / Q000032:analysis; D004351:Drug Resistance; D005290:Ferric Compounds / Q000378:metabolism*; D052203:Ferrosoferric Oxide / Q000378:metabolism; D019015:Geologic Sediments / Q000382:microbiology*; D006093:Gram-Positive Asporogenous Rods / Q000145:classification* / Q000187:drug effects / Q000235:genetics / Q000254:growth & development / Q000302:isolation & purification / Q000378:metabolism; D006863:Hydrogen-Ion Concentration; D008055:Lipids / Q000032:analysis; D010084:Oxidation-Reduction; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012689:Sequence Homology, Nucleic Acid; D013696:Temperature; D014871:Water Microbiology
chemical_list: D000900:Anti-Bacterial Agents; D004269:DNA, Bacterial; D005290:Ferric Compounds; D008055:Lipids; D012336:RNA, Ribosomal, 16S; C000499:ferric oxide; C021024:ferric hydroxide; D002248:Carbon Monoxide; D052203:Ferrosoferric Oxide