NMPP: a user-customized NimbleGen microarray data processing pipeline.
NMPP package is a bundle of user-customized tools based on established algorithms and methods to process self-designed NimbleGen microarray data. It features a command-line-based integrative processing procedure that comprises five major functional components, namely the raw microarray data parsing and integrating module, the array spatial effect smoothing and visualization module, the probe-level multi-array normalization module, the gene expression intensity summarization module and the gene expression status inference module.


BACKGROUND
http://plantgenomics.biology.yale.edu/nmpp
Wang
Xiangfeng
X
Center of Bioinformatics & Peking-Yale Joint Research Center of Plant Molecular Genetics and Agrobiotechnology, College of Life Sciences, Peking University, Beijing 100871, China. Xiangfeng.Wang@Yale.edu
He
Hang
H
Li
Lei
L
Chen
Runsheng
R
Deng
Xing Wang
XW
Li
Songgang
S
D000465:Algorithms; D020869:Gene Expression Profiling / Q000379:methods*; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D012984:Software; D014584:User-Computer Interface