title: The LRRK2 Gly2385Arg variant is associated with Parkinson's disease: genetic and functional evidence.
abstract: Evidence of LRRK2 haplotypes associated with Parkinson's disease (PD) risk was recently found in the Chinese population from Singapore, and a common LRRK2 missense variant, Gly2385Arg, was independently detected as a putative risk factor for PD in the Chinese population from Taiwan. To test the association between the Gly2385Arg variant in a large case-control sample of Chinese ethnicity from Singapore, and to perform functional studies of the wild type and Gly2385Arg LRRK2 protein in human cell lines. In a case-control study involving 989 Chinese subjects, the frequency of the heterozygous Gly2385Arg genotype was higher in PD compared to controls (7.3 vs. 3.6%, odds ratio = 2.1, 95% CI: 1.1-3.9, P = 0.014); these values yield an estimated population attributable risk (PAR) of approximately 4%. In a multivariate logistic regression analysis with the disease group (PD vs. controls) as the dependent variable and the genotype as an independent factor with adjustments made for the effect of age and gender, the heterozygous Gly2385Arg genotype remained associated with an increased risk of PD compared to wild type genotype (odds ratio = 2.67, 95% CI: 1.43-4.99, P = 0.002). The glycine at position 2385 is a candidate site for N-myristoylation, and the Gly2385Arg variant replaces the hydrophobic glycine with the hydrophilic arginine, and increases the net positive charge of the LRRK2 WD40 domain. In transfection studies, we demonstrated that both the wild type and Gly2385Arg variant LRRK2 protein localize to the cytoplasm and form aggregates. However, under condition of oxidative stress, the Gly2385Arg variant was more toxic and associated with a higher rate of apoptosis. Our study lends support to the contention that the Gly2385Arg is a common risk factor for PD in the Chinese population. Our bioinformatics and in-vitro studies also suggest that the Gly2385Arg variant is biologically relevant and it might act through pro-apoptotic mechanisms.
authors.affiliation: Department of Neurology, Singapore General Hospital, Outram Road, Singapore, Singapore.
authors.forename: E K
authors.initials: EK
authors.lastname: Tan
authors.forename: Y
authors.initials: Y
authors.lastname: Zhao
authors.forename: L
authors.initials: L
authors.lastname: Skipper
authors.forename: M G
authors.initials: MG
authors.lastname: Tan
authors.forename: A
authors.initials: A
authors.lastname: Di Fonzo
authors.forename: L
authors.initials: L
authors.lastname: Sun
authors.forename: S
authors.initials: S
authors.lastname: Fook-Chong
authors.forename: S
authors.initials: S
authors.lastname: Tang
authors.forename: E
authors.initials: E
authors.lastname: Chua
authors.forename: Y
authors.initials: Y
authors.lastname: Yuen
authors.forename: L
authors.initials: L
authors.lastname: Tan
authors.forename: R
authors.initials: R
authors.lastname: Pavanni
authors.forename: M C
authors.initials: MC
authors.lastname: Wong
authors.forename: P
authors.initials: P
authors.lastname: Kolatkar
authors.forename: C S
authors.initials: CS
authors.lastname: Lu
authors.forename: V
authors.initials: V
authors.lastname: Bonifati
authors.forename: J J
authors.initials: JJ
authors.lastname: Liu
mesh_terms: D000368:Aged; D019943:Amino Acid Substitution; D044466:Asian People / Q000235:genetics; D016022:Case-Control Studies; D002460:Cell Line; D005260:Female; D005787:Gene Frequency; D020022:Genetic Predisposition to Disease; D014644:Genetic Variation; D006239:Haplotypes; D006801:Humans; D000071158:Leucine-Rich Repeat Serine-Threonine Protein Kinase-2; D008297:Male; D008875:Middle Aged; D008958:Models, Molecular; D010300:Parkinson Disease / Q000201:enzymology / Q000235:genetics*; D017346:Protein Serine-Threonine Kinases / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism; D017434:Protein Structure, Tertiary; D011994:Recombinant Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D012846:Singapore; D014162:Transfection
chemical_list: D011994:Recombinant Proteins; C495280:LRRK2 protein, human; D000071158:Leucine-Rich Repeat Serine-Threonine Protein Kinase-2; D017346:Protein Serine-Threonine Kinases