title: Majority of Actinomadura clinical isolates from sputa or bronchoalveolar lavage fluid in Japan belongs to the cluster of Actinomadura cremea and Actinomadura nitritigenes, and the description of Actinomadura chibensis sp. nov.
abstract: In Japan during 1996-2004, 21 actinomycete strains that have madurose as the diagnostic cell-wall sugar and show true branching in their substrate and aerial mycelia were isolated from sputa or bronchoalveolar lavage (BAL) fluid of patients with pulmonary infections or who were suspected of having related infections. Chemotaxonomic studies showed that all the isolates belong to the genus Actinomadura. Among them, six and seven strains were classified respectively into clusters of Actinomadura nitritigenes and Actinomadura cremea based on 16S rDNA analyses because their 16S rDNA similarities to those respective species were greater than 99.5%. To our knowledge, this is first report that strains of above two species were isolated from clinical specimens. Neither Actinomadura madurae nor Actinomadura pelletieri strain was isolated, and one new species, Actinomadura chibensis, was proposed; the remaining seven strains were not assigned into any known species, suggesting the presence of another new Actinomadura species.
authors.affiliation: Research Center for Pathogenic Fungi and Microbial Toxicoses, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba, 260-8673, Japan.
authors.forename: Ahmed
authors.initials: A
authors.lastname: Hanafy
authors.forename: Junji
authors.initials: J
authors.lastname: Ito
authors.forename: Soji
authors.initials: S
authors.lastname: Iida
authors.forename: Yingqian
authors.initials: Y
authors.lastname: Kang
authors.forename: Takahisa
authors.initials: T
authors.lastname: Kogure
authors.forename: Katsukiyo
authors.initials: K
authors.lastname: Yazawa
authors.forename: Takashi
authors.initials: T
authors.lastname: Yaguchi
authors.forename: Yuzuru
authors.initials: Y
authors.lastname: Mikami
mesh_terms: D039903:Actinobacteria / Q000145:classification* / Q000302:isolation & purification; D000193:Actinomycetales Infections / Q000382:microbiology*; D000328:Adult; D000368:Aged; D000369:Aged, 80 and over; D001992:Bronchoalveolar Lavage Fluid / Q000382:microbiology*; D005260:Female; D006801:Humans; D007564:Japan; D008297:Male; D008855:Microscopy, Electron, Scanning; D008875:Middle Aged; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017421:Sequence Analysis; D013183:Sputum / Q000382:microbiology*
chemical_list: D012336:RNA, Ribosomal, 16S