title: New p63 targets in keratinocytes identified by a genome-wide approach.
abstract: p63 is a developmentally regulated transcription factor related to p53. It is involved in the development of ectodermal tissues, including limb, skin and in general, multilayered epithelia. The DeltaNp63alpha isoform is thought to play a 'master' role in the asymmetric division of epithelial cells. It is also involved in the pathogenesis of several human diseases, phenotypically characterized by ectodermal dysplasia. Our understanding of transcriptional networks controlled by p63 is limited, owing to the low number of bona fide targets. To screen for new targets, we employed chromatin immunoprecipitation from keratinocytes (KCs) coupled to the microarray technology, using both CpG islands and promoter arrays. The former revealed 96 loci, the latter yielded 85 additional genes. We tested 40 of these targets in several functional assays, including: (i) in vivo binding by p63 in primary KCs; (ii) expression analysis in differentiating HaCaT cells and in cells overexpressing DeltaNp63alpha; (iii) promoter transactivation and (iv) immunostaining in normal tissues, confirming their regulation by p63. We discovered several new specific targets whose functional categorization links p63 to cell growth and differentiation.
authors.affiliation: Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita' di Milano, Milano, Italy. alessandra.vigano@guest.unimi.it
authors.forename: M Alessandra
authors.initials: MA
authors.lastname: Viganò
authors.forename: Jérôme
authors.initials: J
authors.lastname: Lamartine
authors.forename: Barbara
authors.initials: B
authors.lastname: Testoni
authors.forename: Daniele
authors.initials: D
authors.lastname: Merico
authors.forename: Daniela
authors.initials: D
authors.lastname: Alotto
authors.forename: Carlotta
authors.initials: C
authors.lastname: Castagnoli
authors.forename: Amèlie
authors.initials: A
authors.lastname: Robert
authors.forename: Eleonora
authors.initials: E
authors.lastname: Candi
authors.forename: Gerry
authors.initials: G
authors.lastname: Melino
authors.forename: Xavier
authors.initials: X
authors.lastname: Gidrol
authors.forename: Roberto
authors.initials: R
authors.lastname: Mantovani
mesh_terms: D000818:Animals; D019556:COS Cells; D002454:Cell Differentiation / Q000502:physiology*; D002522:Chlorocebus aethiops; D004268:DNA-Binding Proteins / Q000235:genetics / Q000378:metabolism*; D006801:Humans; D015603:Keratinocytes / Q000166:cytology / Q000378:metabolism*; D038081:Organogenesis / Q000502:physiology; D040081:Protein Array Analysis / Q000379:methods; D011485:Protein Binding / Q000502:physiology; D015534:Trans-Activators / Q000235:genetics / Q000378:metabolism*; D014157:Transcription Factors; D015533:Transcriptional Activation / Q000502:physiology*; D016159:Tumor Suppressor Protein p53 / Q000378:metabolism; D025521:Tumor Suppressor Proteins / Q000235:genetics / Q000378:metabolism*
chemical_list: D004268:DNA-Binding Proteins; C115051:TP63 protein, human; D015534:Trans-Activators; D014157:Transcription Factors; D016159:Tumor Suppressor Protein p53; D025521:Tumor Suppressor Proteins