Integration of gel-based proteome data with pProRep.
pProRep is a web application integrating electrophoretic and mass spectral data from proteome analyses into a relational database. The graphical web-interface allows users to upload, analyse and share experimental proteome data. It offers researchers the possibility to query all previously analysed datasets and can visualize selected features, such as the presence of a certain set of ions in a peptide mass spectrum, on the level of the two-dimensional gel.


BACKGROUND
The pProRep package and instructions for its use can be downloaded from http://www.ptools.ua.ac.be/pProRep. The application requires a web server that runs PHP 5 (http://www.php.net) and MySQL. Some (non-essential) extensions need additional freely available libraries: details are described in the installation instructions.
Laukens
Kris
K
Laboratory of Plant Physiology and Plant Biochemistry, University of Antwerp Groenenborgerlaan 171, B-2020 Antwerp, Belgium. kris.laukens@ua.ac.be
Matthiesen
Rune
R
Lemière
Filip
F
Esmans
Eddy
E
Onckelen
Harry Van
HV
Jensen
Ole Nørregaard
ON
Witters
Erwin
E
D019295:Computational Biology / Q000379:methods*; D003628:Database Management Systems; D030541:Databases, Genetic; D030562:Databases, Protein; D015180:Electrophoresis, Gel, Two-Dimensional; D016247:Information Storage and Retrieval; D020407:Internet; D007477:Ions; D013058:Mass Spectrometry / Q000379:methods*; D010455:Peptides / Q000737:chemistry; D011381:Programming Languages; D020543:Proteome; D040901:Proteomics / Q000379:methods*; D012984:Software; D014584:User-Computer Interface
D007477:Ions; D010455:Peptides; D020543:Proteome