title: Phylogenetic diversity, localization, and cell morphologies of members of the candidate phylum TG3 and a subphylum in the phylum Fibrobacteres, recently discovered bacterial groups dominant in termite guts.
abstract: Recently we discovered two novel, deeply branching lineages in the domain Bacteria from termite guts by PCR-based analyses of 16S rRNA (Y. Hongoh, P. Deevong, T. Inoue, S. Moriya, S. Trakulnaleamsai, M. Ohkuma, C. Vongkaluang, N. Noparatnaraporn, and T. Kudo, Appl. Environ. Microbiol. 71:6590-6599, 2005). Here, we report on the specific detection of these bacteria, the candidate phylum TG3 (Termite Group 3) and a subphylum in the phylum Fibrobacteres, by fluorescence in situ hybridization in the guts of the wood-feeding termites Microcerotermes sp. and Nasutitermes takasagoensis. Both bacterial groups were detected almost exclusively from the luminal fluid of the dilated portion in the hindgut. Each accounted for approximately 10% of the total prokaryotic cells, constituting the second-most dominant groups in the whole-gut microbiota. The detected cells of both groups were in undulate or vibroid forms and apparently resembled small spirochetes. The cell sizes were 0.2 to 0.4 by 1.3 to 6.0 microm and 0.2 to 0.3 by 1.3 to 4.9 microm in the TG3 and Fibrobacteres, respectively. Using PCR screenings with specific primers, we found that both groups are distributed among various termites. The obtained clones formed monophyletic clusters that were delineated by the host genus rather than by the geographic distance, implying a robust association between these bacteria and host termites. TG3 clones were also obtained from a cockroach gut, lake sediment, rice paddy soil, and deep-sea sediments. Our results suggest that the TG3 and Fibrobacteres bacteria are autochthonous gut symbionts of various termites and that the TG3 members are also widely distributed among various other environments.
authors.affiliation: Environmental Molecular Biology Laboratory, RIKEN, Saitama 351-0198, Japan. yhongo@postman.riken.jp
authors.forename: Yuichi
authors.initials: Y
authors.lastname: Hongoh
authors.forename: Pinsurang
authors.initials: P
authors.lastname: Deevong
authors.forename: Satoshi
authors.initials: S
authors.lastname: Hattori
authors.forename: Tetsushi
authors.initials: T
authors.lastname: Inoue
authors.forename: Satoko
authors.initials: S
authors.lastname: Noda
authors.forename: Napavarn
authors.initials: N
authors.lastname: Noparatnaraporn
authors.forename: Toshiaki
authors.initials: T
authors.lastname: Kudo
authors.forename: Moriya
authors.initials: M
authors.lastname: Ohkuma
mesh_terms: D000818:Animals; D001419:Bacteria / Q000145:classification / Q000235:genetics / Q000254:growth & development*; D048429:Cell Size; D004269:DNA, Bacterial / Q000032:analysis; D004064:Digestive System / Q000382:microbiology*; D017753:Ecosystem; D020049:Isoptera / Q000382:microbiology*; D008969:Molecular Sequence Data; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000032:analysis* / Q000145:classification / Q000235:genetics; D017422:Sequence Analysis, DNA; D013559:Symbiosis
chemical_list: D004269:DNA, Bacterial; D012336:RNA, Ribosomal, 16S