Thermodynamics of amino acid side-chain internal rotations.
The absolute Gibbs energy, enthalpy and entropy of each of the internal rotations found in protein side chains has been calculated. The calculation requires the moments of inertia of the side chains about each bond, the potential energy barrier and the symmetry number and gives the maximum possible thermodynamic consequences of restricting side chain motion when a protein folds. Hindering side chain internal rotations is unfavourable in terms of Gibbs energy and entropy; it is enthalpically favourable at 0 K. At room temperature, it is estimated that the adverse entropy of hindering buried side chain internal rotation is only 25% of the absolute entropy. The difference between absolute entropies in the folded and unfolded states gives the entropy change for folding. The estimated Gibbs energy change for restricting each residue correlates moderately well with the probability of that residue being found on the folded protein surface, rather than in the protein interior (where motion is restricted).
Doig
A J
AJ
Department of Biochemistry and Applied Molecular Biology, UMIST, P.O. Box 88, Manchester M60 1QD, UK.