GenoProfiler: batch processing of high-throughput capillary fingerprinting data.
High-throughput content fingerprinting techniques employing capillary electrophoresis place new demands on the editing of fingerprint files for the downstream contig assembly program, FPC. A cross-platform software application, GenoProfiler, was developed for automated editing of sized fingerprinting profiles generated by the ABI Genetic Analyzers. The batch-processing module extracts the sized fragment information directly from the ABI raw trace files, or from data files exported from GeneMapper or other size calling software, removes the background noise and undesired fragments, and generates fragment size files compatible with the FPC software.


BACKGROUND
http://wheat.pw.usda.gov/PhysicalMapping/
You
Frank M
FM
Department of Plant Sciences, University of California, Davis, CA 95616, USA.
Luo
Ming-Cheng
MC
Gu
Yong Qiang
YQ
Lazo
Gerard R
GR
Deal
Karin
K
Dvorak
Jan
J
Anderson
Olin D
OD
D000465:Algorithms; D003628:Database Management Systems; D030562:Databases, Protein; D019075:Electrophoresis, Capillary / Q000379:methods*; D020869:Gene Expression Profiling / Q000379:methods*; D016247:Information Storage and Retrieval / Q000379:methods; D010449:Peptide Mapping / Q000379:methods*; D012984:Software; D014584:User-Computer Interface