title: Web-based MS/MS data analysis.
abstract: This tutorial focuses on three MS/MS data analysis programs currently available via a web interface: Mascot, Phenyx and X!Tandem. Although these programs process the same input and often produce comparable outputs, subtle differences remain. The use of parameters that are requested in the on-line forms and the subsequent interpretation of results are illustrated and explained via a single example.
authors.affiliation: Proteome Informatics Group, Swiss Institute of Bioinformatics, Geneva, Switzerland. frederique.lisacek@isb-sib.ch
authors.forename: Frédérique
authors.initials: F
authors.lastname: Lisacek
mesh_terms: D000596:Amino Acids / Q000737:chemistry; D030562:Databases, Protein; D020407:Internet; D040901:Proteomics / Q000193:education / Q000379:methods*; D012984:Software; D019032:Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization / Q000379:methods; D053719:Tandem Mass Spectrometry / Q000379:methods*
chemical_list: D000596:Amino Acids