Wavelet analysis of DNA walks.
A wavelet transform of the DNA "walk" constructed from a genomic sequence offers a direct visualization of short and long-range patterns in nucleotide sequences. We study sequences that encode diverse biological functions, taken from a variety of genomes. Pattern irregularities in the transform are frequently associated with sequences of biological interest. Exonic regions, for example, visualize differently under wavelet analysis than introns, and ribosomal RNA regions display distinct universal signatures. DNA walk wavelet analysis can provide a sensitive and rapid assessment of the putative biological significance of genomic DNA.
Haimovich
Adrian D
AD
The Informatics Institute of the University of Medicine and Dentistry of New Jersey, Newark, 07101-1709, USA. adrian.haimovich@gmail.com
Byrne
Bruce
B
Ramaswamy
Ramakrishna
R
Welsh
William J
WJ
D000818:Animals; D017360:Arabidopsis / Q000235:genetics; D004247:DNA / Q000235:genetics*; D005091:Exons / Q000235:genetics; D016678:Genome / Q000235:genetics*; D006801:Humans; D051379:Mice; D016366:Open Reading Frames / Q000235:genetics; D010957:Plasmids / Q000235:genetics; D012313:RNA / Q000032:analysis / Q000235:genetics; D012342:RNA, Small Nuclear / Q000235:genetics; D012343:RNA, Transfer / Q000235:genetics; D012091:Repetitive Sequences, Nucleic Acid / Q000235:genetics; D012760:Shigella / Q000235:genetics
D012342:RNA, Small Nuclear; D012313:RNA; D004247:DNA; D012343:RNA, Transfer