KGraph: a system for visualizing and evaluating complex genetic associations.
The KGraph is a data visualization system that has been developed to display the complex relationships between the univariate and bivariate associations among an outcome of interest, a set of covariates, and a set of genetic factors, such as single nucleotide polymorphisms (SNPs). It allows for easy viewing and interpretation of genetic associations, correlations among covariates and SNPs, and information about the replication and cross-validation of the associations. The KGraph allows the user to more easily investigate multicollinearity and confounding through visualization of the multidimensional correlation structure underlying genetic associations. It emphasizes gene-environment and gene-gene interaction, both important components of any genetic system that are often overlooked in association frameworks.


BACKGROUND
http://www.epidkardia.sph.umich.edu/software/kgrapher
Kelly
Reagan J
RJ
Department of Epidemiology, School of Public Health, University of Michigan, Ann Arbor, MI 48104, USA. reagank@umich.edu
Jacobsen
Douglas M
DM
Sun
Yan V
YV
Smith
Jennifer A
JA
Kardia
Sharon L R
SL
D000465:Algorithms; D003196:Computer Graphics; D003198:Computer Simulation; D020022:Genetic Predisposition to Disease / Q000235:genetics*; D005828:Genetics, Population; D006801:Humans; D016247:Information Storage and Retrieval / Q000379:methods; D015810:Linkage Disequilibrium / Q000235:genetics*; D008957:Models, Genetic; D012984:Software; D013223:Statistics as Topic; D014584:User-Computer Interface