Modelling periodic oscillation of biological systems with multiple timescale networks.
In this paper, we aim to develop a new methodology to model and design periodic oscillators of biological networks, in particular gene regulatory networks with multiple genes, proteins and time delays, by using multiple timescale networks (MTN). Fast reactions constitute a positive feedback-loop network (PFN), while slow reactions consist of a cyclic feedback-loop network (CFN), in MTN. Multiple timescales are exploited to simplify models according to singular perturbation theory. We show that a MTN has no stable equilibrium but stable periodic orbits when certain conditions are satisfied. Specifically, we first prove the basic properties of MTNs with only one PFN, and then generalise the result to MTNs with multiple PFNs. Finally, we design a biologically plausible gene regulatory network by the cI and Lac genes, to demonstrate the theoretical results. Since there is less restriction on the network structure of a MTN, it can be expected to apply to a wide variety of areas on the modelling, analysing and designing of biological systems.
Wang
R
R
Osaka Sangyo University, Daito, Japan.
Zhou
T
T
Jing
Z
Z
Chen
L
L
D001683:Biological Clocks / Q000502:physiology*; D002468:Cell Physiological Phenomena; D002940:Circadian Rhythm / Q000502:physiology*; D003198:Computer Simulation; D005246:Feedback / Q000502:physiology; D015870:Gene Expression / Q000502:physiology*; D007700:Kinetics; D008657:Metabolic Clearance Rate; D008954:Models, Biological; D010507:Periodicity; D012680:Sensitivity and Specificity; D015398:Signal Transduction / Q000502:physiology*; D013997:Time Factors