16S rRNA gene analyses of bacterial community structures in the soils of evergreen broad-leaved forests in south-west China.
Bacterial community structure was studied in humus and mineral soils of evergreen broad-leaved forests in Ailaoshan and Xishuangbanna, representing subtropical and tropical ecosystems, respectively, in south-west China using sequence analysis and terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes. Clone sequences affiliated to Acidobacteria were retrieved as the predominant bacterial phylum in both forest soils, followed by those affiliated to members of the Proteobacteria, Planctomycete and Verrucomicrobia. Despite higher floristic richness at the Xishuangbanna forest than at the Ailaoshan forest, soil at Xishuangbanna harbored a distinctly high relative abundance of Acidobacteria-affiliated sequences (80% of the total clones), which led to a lower overall bacterial diversity than at Ailaoshan. Bacterial communities in humus and mineral soils of the two forests appeared to be well differentiated, based on 16S rRNA gene phylogeny, and correlations were found between the bacterial T-RFLP community patterns and the organic carbon and nutrient contents of the soil samples. The data reveal that Acidobacteria dominate soil bacterial communities in the evergreen broad-leaved forests studied here and suggest that bacterial diversity may be influenced by soil carbon and nutrient levels, but is not related to floristic richness along the climatic gradient from subtropical to tropical forests in south-west China.
Chan
On Chim
OC
Xishuangbanna Tropical Botanical Garden, the Chinese Academy of Sciences, Department of Forest Ecosystem, Soil Ecology Group, Kunming, Yunnan, China. onchim@xtbg.ac.cn
Yang
Xiaodong
X
Fu
Yun
Y
Feng
Zhili
Z
Sha
Liqing
L
Casper
Peter
P
Zou
Xiaoming
X
D001419:Bacteria / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification; D044822:Biodiversity; D018533:Biomass; D002681:China; D003001:Cloning, Molecular; D016172:DNA Fingerprinting; D004269:DNA, Bacterial / Q000737:chemistry / Q000235:genetics; D020459:Genes, rRNA; D008969:Molecular Sequence Data; D009930:Organic Chemicals / Q000032:analysis; D010802:Phylogeny; D018517:Plant Roots; D012150:Polymorphism, Restriction Fragment Length; D012336:RNA, Ribosomal, 16S / Q000235:genetics*; D017422:Sequence Analysis, DNA; D012988:Soil Microbiology; D013223:Statistics as Topic; D014197:Trees
D004269:DNA, Bacterial; D009930:Organic Chemicals; D012336:RNA, Ribosomal, 16S