title: The biochemical differentiation of Enterobacter sakazakii genotypes.
abstract: BACKGROUND
  Enterobacter sakazakii is an emergent pathogen that has been associated with neonatal infections through contaminated powdered infant milk formula. The species was defined by Farmer et al. (1980) who described 15 biogroups according to the biochemical characterization of 57 strains. This present study compares genotypes (DNA cluster groups based on partial 16S rDNA sequence analysis) with the biochemical traits for 189 E. sakazakii strains.
  
  
  RESULTS
  Analysis of partial 16S rDNA sequences gave 4 well defined phylogenetic groups. Cluster group 1 was composed of the majority of strains (170/189) and included Biogroups 1-5, 7-9, 11, 13 and 14. Cluster 3 corresponded with Biogroup 15 and cluster 4 with Biogroups 6, 10 and 12. Cluster group 2 comprised a new Biogroup 16. For the isolates in this study, the four DNA cluster groups can be distinguished using the inositol, dulcitol and indole tests.
  
  
  CONCLUSIONS
  This study demonstrates an agreement between genotyping (partial 16S rDNA) and biotyping and describes a new biogroup of E. sakazakii.
authors.affiliation: School of Biomedical and Natural Sciences, Nottingham Trent University, Clifton Lane, Nottingham, NG11 8NS, UK. carol.iversen@hotmail.co.uk
authors.forename: Carol
authors.initials: C
authors.lastname: Iversen
authors.forename: Mike
authors.initials: M
authors.lastname: Waddington
authors.forename: Jim J
authors.initials: JJ
authors.lastname: Farmer
authors.forename: Stephen J
authors.initials: SJ
authors.lastname: Forsythe
mesh_terms: D044083:Cronobacter sakazakii / Q000145:classification* / Q000235:genetics*; D005838:Genotype; D010802:Phylogeny; D012329:RNA, Bacterial / Q000235:genetics; D012336:RNA, Ribosomal, 16S / Q000235:genetics
chemical_list: D012329:RNA, Bacterial; D012336:RNA, Ribosomal, 16S