Testis-specific expression and genomic multiplicity of the rat Rtdpoz genes that encode bipartite TRAF- and POZ/BTB-domain proteins.
Based on bioinformatics analysis, we previously hypothesized the existence of a bipartite TDPOZ protein family members of which carry the TRAF domain (TD) and POZ/BTB [Huang, C.-J., Chen, C.-Y., Chen, H.-H., Tsai, S.-F., Choo, K.-B., 2004. TDPOZ, a family of bipartite animal and plant proteins that contain the TRAF (TD) and POZ/BTB domains. Gene 324, 117-127.]. Conservation in animals and plants suggests important biological functions for the putative TDPOZ proteins. In this work, we report testis-specific expression of two new Tdpoz members, Rtdpoz-T1 and -T2, of the rat genome; the result clearly indicates that members of the hypothetical gene family are, indeed, expressed. T1 and T2 cDNA sequences were derived by rapid amplification of cDNA ends (RACE). The exons of the genes were determined by queries of the rat genome sequence draft and selectively confirmed in splicing assays. The results indicate that T1 and T2 share a common leader exon indicative of alternative splicing, and that the genes are uninterrupted by introns in their respective coding sequences. Database interrogations also reveal a combined 297 hits of Rtdpoz-like sequences on 7 chromosomes; however, the bulk of the hits (264) and 26 putative TDPOZ-encoding genes, including T1 and T2, are found in a approximately 2.5 Mb cluster in the Rn2_2148 supercontig on chromosome 2. Our data signify retrotransposition in the generation and expansion of the Rtdpoz repertoire in the rat genome. We also anticipate spatio-temporal-specific expression of many more TDPOZ members in the rat or other animals and plants.
Choo
Kong-Bung
KB
Department of Medical Research and Education, Taipei Veterans General Hospital, Shipai, Taipei, 112 Taiwan.
Hsu
Min-Chuan
MC
Chong
Kowit-Yu
KY
Huang
Chiu-Jung
CJ
D020816:Amino Acid Motifs / Q000235:genetics; D000818:Animals; D016678:Genome; D007438:Introns / Q000235:genetics; D008297:Male; D005810:Multigene Family / Q000235:genetics*; D034521:Nuclear Matrix-Associated Proteins / Q000235:genetics*; D051381:Rats; D017207:Rats, Sprague-Dawley; D047990:TNF Receptor-Associated Factor 1 / Q000737:chemistry / Q000235:genetics*; D013737:Testis / Q000378:metabolism; D016335:Zinc Fingers
D034521:Nuclear Matrix-Associated Proteins; D047990:TNF Receptor-Associated Factor 1