title: A gene encoding starch branching enzyme I (SBEI) in apple (Malusxdomestica, Rosaceae) and its phylogenetic relationship to Sbe genes from other angiosperms.
abstract: An apple starch-branching enzyme SbeI gene (GenBank Accession No. DQ115404) has been isolated, cloned, and sequenced. The SbeI is a single copy gene in the apple genome, consisting of 14 exons and 13 introns, and covering 6075bp. As detected by RT-PCR, the apple SbeI is expressed at very low levels during early stages of fruit development; while, the highest levels of mRNA transcripts are observed at approximately 44 days post-pollination. Besides fruits, the apple SbeI is also expressed in buds and flowers, and very weakly in leaves. The genomic structure of SbeI in apple is strikingly similar to those reported so far in grasses (Poaceae), with exons 4 through 13 being of identical lengths in both apple and grasses. Moreover, structure similarities in exon lengths have also been detected in SbeII genes of both grasses and eudicots. These findings prompted the investigation of the evolutionary process of the Sbe gene family in angiosperms. A total of 26 Sbe sequences, representing an array of monocots and eudicots, are investigated in this study. Phylogenetic analysis has suggested that Sbe genes have duplicated into SbeI and SbeII prior to the divergence of moncots from eudicots. The SbeII gene is further duplicated into SbeIIa and SbeIIb prior to the radiation of grasses; however, it is not yet clear whether this duplication event has occurred before or after the radiation of the eudicots.
authors.affiliation: Department of Natural Resources and Environmental Sciences, University of Illinois, Urbana, IL 61801, USA.
authors.forename: Yuepeng
authors.initials: Y
authors.lastname: Han
authors.forename: Ksenija
authors.initials: K
authors.lastname: Gasic
authors.forename: Fengjie
authors.initials: F
authors.lastname: Sun
authors.forename: Mingliang
authors.initials: M
authors.lastname: Xu
authors.forename: Schuyler S
authors.initials: SS
authors.lastname: Korban
mesh_terms: D015061:1,4-alpha-Glucan Branching Enzyme / Q000235:genetics*; D001483:Base Sequence; D015139:Blotting, Southern; D018744:DNA, Plant / Q000032:analysis / Q000235:genetics; D018628:Gene Dosage; D015971:Gene Expression Regulation, Enzymologic; D018506:Gene Expression Regulation, Plant; D019684:Magnoliopsida / Q000145:classification / Q000201:enzymology / Q000235:genetics*; D027845:Malus / Q000145:classification / Q000201:enzymology / Q000235:genetics*; D008969:Molecular Sequence Data; D010802:Phylogeny; D010940:Plant Proteins / Q000235:genetics*; D011401:Promoter Regions, Genetic / Q000235:genetics; D012333:RNA, Messenger / Q000235:genetics / Q000378:metabolism; D020133:Reverse Transcriptase Polymerase Chain Reaction; D017422:Sequence Analysis, DNA
chemical_list: D018744:DNA, Plant; D010940:Plant Proteins; D012333:RNA, Messenger; D015061:1,4-alpha-Glucan Branching Enzyme