title: Distinct reorganization of the genome transcription associates with organogenesis of somatic embryo, shoots, and roots in rice.
abstract: Most plant cells retain the capacity to differentiate into all the other cell and organ types that constitute a plant. However, genome-wide transcriptional activities underlying the process of cell differentiation are poorly understood, especially in monocot plants. Here we used a rice (Oryza sativa) cell culture system to generate somatic embryos, which were further induced into shoots and roots. The global transcriptional reorganization during the development of somatic embryos, shoots, and roots from cultured cells was studied using a rice whole genome microarray and verified by RNA blotting analysis of representative genes. Overall, only 1-3% of expressed genes were differentially regulated during each organogenesis process at the examined time point. Also metabolic pathways were minimally regulated. Thus the genes that dictating organ formation should be relatively small in number. Comparison of these three transcriptomes revealed little overlap during these three organogenesis processes. These results indicate that each organogenesis involves specific reorganization of genome expression.
authors.affiliation: Peking-Yale Joint Center of Plant Molecular Genetics and Agrobiotechnology, College of Life Sciences, Peking University, Beijing 100871, China.
authors.forename: Ning
authors.initials: N
authors.lastname: Su
authors.forename: Kun
authors.initials: K
authors.lastname: He
authors.forename: Yuling
authors.initials: Y
authors.lastname: Jiao
authors.forename: Chen
authors.initials: C
authors.lastname: Chen
authors.forename: Junli
authors.initials: J
authors.lastname: Zhou
authors.forename: Lei
authors.initials: L
authors.lastname: Li
authors.forename: Sulan
authors.initials: S
authors.lastname: Bai
authors.forename: Xueyong
authors.initials: X
authors.lastname: Li
authors.forename: Xing Wang
authors.initials: XW
authors.lastname: Deng
mesh_terms: D002478:Cells, Cultured; D020869:Gene Expression Profiling; D018507:Gene Expression Regulation, Developmental; D018506:Gene Expression Regulation, Plant; D018745:Genome, Plant; D020411:Oligonucleotide Array Sequence Analysis; D012275:Oryza / Q000196:embryology / Q000235:genetics* / Q000254:growth & development* / Q000378:metabolism; D018517:Plant Roots / Q000254:growth & development; D018520:Plant Shoots / Q000254:growth & development; D014158:Transcription, Genetic