title: Optical modeling of liquid crystal biosensors.
abstract: Optical simulations of a liquid crystal biosensor device are performed using an integrated optical/textural model based on the equations of nematodynamics and two optical methods: the Berreman optical matrix method [J. Opt. Soc. Am. 62, 502 (1972)] and the discretization of the Maxwell equations based on the finite difference time domain (FDTD) method. Testing the two optical methods with liquid crystal films of different degrees of orientational heterogeneities demonstrates that only the FDTD method is suitable to model this device. Basic substrate-induced texturing process due to protein adsorption gives rise to an orientation correlation function that is nearly linear with the transmitted light intensity, providing a basis to calibrate the device. The sensitivity of transmitted light to film thickness, protein surface coverage, and wavelength is established. A crossover incident light wavelength close to lambda(co) approximately 500 nm is found, such that when lambda>lambda(co) thinner films are more sensitive to the amount of protein surface coverage, while for lambda<lambda(co) the reverse holds. In addition it is found that for all wavelengths the sensitivity increases with the amount of protein coverage. The integrated device model based on FDTD optical simulations in conjunction with the Landau-de Gennes nematodynamics model provides a rational basis for further progress in liquid crystal biosensor devices.
authors.affiliation: Department of Chemical Engineering, McGill University, 3610 University Street, Montreal, Quebec H3A 2B2, Canada.
authors.forename: Dae Kun
authors.initials: DK
authors.lastname: Hwang
authors.forename: Alejandro D
authors.initials: AD
authors.lastname: Rey
mesh_terms: D000327:Adsorption; D000465:Algorithms; D015374:Biosensing Techniques; D008027:Light; D050866:Liquid Crystals / Q000737:chemistry*; D008954:Models, Biological; D055095:Optics and Photonics; D011506:Proteins / Q000737:chemistry*; D013499:Surface Properties
chemical_list: D011506:Proteins