title: QTL identification for early blight resistance (Alternaria solani) in a Solanum lycopersicum x S. arcanum cross.
abstract: Alternaria solani (Ellis and Martin) Sorauer, the causal agent of early blight (EB) disease, infects aerial parts of tomato at both seedling and adult plant stages. Resistant cultivars would facilitate a sustainable EB management. EB resistance is a quantitatively expressed character, a fact that has hampered effective breeding. In order to identify and estimate the effect of genes conditioning resistance to EB, a quantitative trait loci (QTL) mapping study was performed in F2 and F3 populations derived from the cross between the susceptible Solanum lycopersicum (syn. Lycopersicon esculentum) cv. 'Solentos' and the resistant Solanum arcanum (syn. Lycopersicon peruvianum) LA2157 and genotyped with AFLP, microsatellite and SNP markers. Two evaluation criteria of resistance were used: measurements of EB lesion growth on the F2 plants in glasshouse tests and visual ratings of EB severity on foliage of the F3 lines in a field test. A total of six QTL regions were mapped on chromosomes 1, 2, 5-7, and 9 with LOD scores ranging from 3.4 to 17.5. Three EB QTL also confer resistance to stem lesions in the field, which has not been reported before. All QTL displayed significant additive gene action; in some cases a dominance effect was found. Additive x additive epistatic interactions were detected between one pair of QTL. For two QTL, the susceptible parent contributed resistance alleles to both EB and stem lesion resistance. Three of the QTL showed an effect in all tests despite methodological and environmental differences.
authors.affiliation: Plant Research International, P.O. Box 16, 6700 AA, Wageningen, The Netherlands.
authors.forename: R
authors.initials: R
authors.lastname: Chaerani
authors.forename: M J M
authors.initials: MJ
authors.lastname: Smulders
authors.forename: C G
authors.initials: CG
authors.lastname: van der Linden
authors.forename: B
authors.initials: B
authors.lastname: Vosman
authors.forename: P
authors.initials: P
authors.lastname: Stam
authors.forename: R E
authors.initials: RE
authors.lastname: Voorrips
mesh_terms: D000528:Alternaria / Q000502:physiology*; D002874:Chromosome Mapping; D020090:Chromosome Segregation; D032461:Chromosomes, Plant / Q000235:genetics; D003433:Crosses, Genetic; D008040:Genetic Linkage; D005838:Genotype; D007113:Immunity, Innate / Q000235:genetics; D018551:Solanum lycopersicum / Q000235:genetics* / Q000382:microbiology*; D008957:Models, Genetic; D010641:Phenotype; D010935:Plant Diseases / Q000235:genetics* / Q000276:immunology*; D018515:Plant Leaves / Q000235:genetics / Q000382:microbiology; D018547:Plant Stems / Q000235:genetics / Q000382:microbiology; D040641:Quantitative Trait Loci / Q000235:genetics*