Logic regression for analysis of the association between genetic variation in the renin-angiotensin system and myocardial infarction or stroke.
Recent developments in genetic sequencing technology now make it possible to genotype large numbers of single nucleotide polymorphisms (SNPs) in large samples. Many association studies using SNP data are now being carried out. Typically, these observational studies establish whether certain haplotypes or individual SNPs are associated with a health outcome. Few methods exist for finding interaction effects among multiple SNPs or between SNPs and environmental factors. In this paper, the authors describe logic regression, an exploratory method with which to identify interactions for further research. They illustrate this method using data from a US case-control study of myocardial infarction and stroke (1995-1999) carried out among 1,614 persons in Washington State who were genotyped for 32 SNPs on five genes in the renin-angiotensin system.
Kooperberg
Charles
C
Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA. clk@fhcrc.org
Bis
Joshua C
JC
Marciante
Kristin D
KD
Heckbert
Susan R
SR
Lumley
Thomas
T
Psaty
Bruce M
BM
D000809:Angiotensins / Q000235:genetics; D000959:Antihypertensive Agents / Q000627:therapeutic use; D016022:Case-Control Studies; D004363:Drug Utilization; D004812:Epidemiologic Methods; D004843:Epistasis, Genetic; D005260:Female; D005838:Genotype; D006239:Haplotypes; D006801:Humans; D008297:Male; D009203:Myocardial Infarction / Q000235:genetics*; D020641:Polymorphism, Single Nucleotide; D044140:Receptor, Angiotensin, Type 1 / Q000235:genetics; D044139:Receptor, Angiotensin, Type 2 / Q000235:genetics; D012044:Regression Analysis; D012084:Renin-Angiotensin System / Q000235:genetics*; D020521:Stroke / Q000235:genetics*
D000809:Angiotensins; D000959:Antihypertensive Agents; D044140:Receptor, Angiotensin, Type 1; D044139:Receptor, Angiotensin, Type 2