Watching hydrogen-bond dynamics in a beta-turn by transient two-dimensional infrared spectroscopy.
X-ray crystallography and nuclear magnetic resonance measurements provide us with atomically resolved structures of an ever-growing number of biomolecules. These static structural snapshots are important to our understanding of biomolecular function, but real biomolecules are dynamic entities that often exploit conformational changes and transient molecular interactions to perform their tasks. Nuclear magnetic resonance methods can follow such structural changes, but only on millisecond timescales under non-equilibrium conditions. Time-resolved X-ray crystallography has recently been used to monitor the photodissociation of CO from myoglobin on a subnanosecond timescale, yet remains challenging to apply more widely. In contrast, two-dimensional infrared spectroscopy, which maps vibrational coupling between molecular groups and hence their relative positions and orientations, is now routinely used to study equilibrium processes on picosecond timescales. Here we show that the extension of this method into the non-equilibrium regime allows us to observe in real time in a short peptide the weakening of an intramolecular hydrogen bond and concomitant opening of a beta-turn. We find that the rate of this process is two orders of magnitude faster than the 'folding speed limit' established for contact formation between protein side chains.
Kolano
Christoph
C
Physikalisch-Chemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH8057 Zürich, Switzerland. p.hamm@pci.unizh.ch) or
Helbing
Jan
J
Kozinski
Mariusz
M
Sander
Wolfram
W
Hamm
Peter
P
D003198:Computer Simulation; D006860:Hydrogen Bonding; D008958:Models, Molecular; D010456:Peptides, Cyclic / Q000737:chemistry; D017433:Protein Structure, Secondary; D013055:Spectrophotometry, Infrared / Q000379:methods*; D017550:Spectroscopy, Fourier Transform Infrared
D010456:Peptides, Cyclic; C515705:cyclo(boc-Cys-Pro-Aib-Cys-OMe)