title: GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring.
abstract: We have implemented a graph layout algorithm that exposes Gene Ontology (GO) class structure on the network nodes. It can be used in conjunction with BiNGO plug-in to Cytoscape, which finds the GO categories over-represented in a given network. Our plug-in, named GOlorize, first highlights the class members with category-specific color-coding and then constructs an enhanced visualization of the network using a class-directed layout algorithm.
  
  
  BACKGROUND
  http://www.cytoscape.org/plugins2.php.
  
  
  BACKGROUND
  Installation instructions and tutorial at http://www.cytoscape.org/plugins/GOlorize/GOlorizeUserGuide.pdf.
authors.affiliation: Systems Biology Unit, Institut Pasteur, 75724 Paris Cedex 15, France.
authors.forename: Olivier
authors.initials: O
authors.lastname: Garcia
authors.forename: Cosmin
authors.initials: C
authors.lastname: Saveanu
authors.forename: Melissa
authors.initials: M
authors.lastname: Cline
authors.forename: Micheline
authors.initials: M
authors.lastname: Fromont-Racine
authors.forename: Alain
authors.initials: A
authors.lastname: Jacquier
authors.forename: Benno
authors.initials: B
authors.lastname: Schwikowski
authors.forename: Tero
authors.initials: T
authors.lastname: Aittokallio
mesh_terms: D000465:Algorithms; D003116:Color; D003196:Computer Graphics; D003198:Computer Simulation; D030562:Databases, Protein; D016247:Information Storage and Retrieval / Q000379:methods; D008954:Models, Biological; D020543:Proteome / Q000378:metabolism*; D015398:Signal Transduction / Q000502:physiology*; D012984:Software; D014584:User-Computer Interface
chemical_list: D020543:Proteome