title: Development of the GENIPOL European flounder (Platichthys flesus) microarray and determination of temporal transcriptional responses to cadmium at low dose.
abstract: We have constructed a high density, 13 270-clone cDNA array for the sentinel fish species European flounder (Platichthys flesus), combining clones from suppressive subtractive hybridization and a liver cDNA library; DNA sequences of 5211 clones were determined. Fish were treated by single intraperitoneal injection with 50 micrograms cadmium chloride per kilogram body weight, a dose relevant to environmental exposures, and hepatic gene expression changes were determined at 1, 2, 4, 8, and 16 days postinjection in comparison to saline-treated controls. Gene expression responses were confirmed by real-time reverse transcription polymerase chain reaction (RT-PCR). Blast2GO gene ontology analysis highlighted a general induction of the unfolded protein response, response to oxidative stress, protein synthesis, transport, and degradation pathways, while apoptosis, cell cycle, cytoskeleton, and cytokine genes were also affected. Transcript levels of cytochrome P450 1A (CYP1A) were repressed and vitellogenin altered, real-time PCR showed induction of metallothionein. We thus describe the establishment of a useful resource for ecotoxicogenomics and the determination of the temporal molecular responses to cadmium, a prototypical heavy metal pollutant.
authors.affiliation: School of Biosciences, The University of Birmingham, Edgbaston, Birmingham, B15 2TT UK. t.d.williams@bham.ac.uk
authors.forename: Tim D
authors.initials: TD
authors.lastname: Williams
authors.forename: Amer M
authors.initials: AM
authors.lastname: Diab
authors.forename: Stephen G
authors.initials: SG
authors.lastname: George
authors.forename: Rita E
authors.initials: RE
authors.lastname: Godfrey
authors.forename: Victoria
authors.initials: V
authors.lastname: Sabine
authors.forename: Ana
authors.initials: A
authors.lastname: Conesa
authors.forename: Steven D
authors.initials: SD
authors.lastname: Minchin
authors.forename: Phil C
authors.initials: PC
authors.lastname: Watts
authors.forename: James K
authors.initials: JK
authors.lastname: Chipman
mesh_terms: D000818:Animals; D019256:Cadmium Chloride / Q000008:administration & dosage / Q000494:pharmacology*; D004305:Dose-Response Relationship, Drug; D004784:Environmental Monitoring / Q000379:methods; D005432:Flounder / Q000235:genetics* / Q000254:growth & development; D020869:Gene Expression Profiling; D018507:Gene Expression Regulation, Developmental / Q000187:drug effects; D008099:Liver / Q000187:drug effects / Q000254:growth & development / Q000378:metabolism; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D020133:Reverse Transcriptase Polymerase Chain Reaction; D014158:Transcription, Genetic / Q000187:drug effects*
chemical_list: D019256:Cadmium Chloride