title: Variation resources at UC Santa Cruz.
abstract: The variation resources within the University of California Santa Cruz Genome Browser include polymorphism data drawn from public collections and analyses of these data, along with their display in the context of other genomic annotations. Primary data from dbSNP is included for many organisms, with added information including genomic alleles and orthologous alleles for closely related organisms. Display filtering and coloring is available by variant type, functional class or other annotations. Annotation of potential errors is highlighted and a genomic alignment of the variant's flanking sequence is displayed. HapMap allele frequencies and linkage disequilibrium (LD) are available for each HapMap population, along with non-human primate alleles. The browsing and analysis tools, downloadable data files and links to documentation and other information can be found at http://genome.ucsc.edu/.
authors.affiliation: Department of Biomolecular Engineering, University of California at Santa Cruz, Santa Cruz, CA, USA. daryl@soe.ucsc.edu
authors.forename: Daryl J
authors.initials: DJ
authors.lastname: Thomas
authors.forename: Heather
authors.initials: H
authors.lastname: Trumbower
authors.forename: Andrew D
authors.initials: AD
authors.lastname: Kern
authors.forename: Brooke L
authors.initials: BL
authors.lastname: Rhead
authors.forename: Robert M
authors.initials: RM
authors.lastname: Kuhn
authors.forename: David
authors.initials: D
authors.lastname: Haussler
authors.forename: W James
authors.initials: WJ
authors.lastname: Kent
mesh_terms: D000483:Alleles; D000818:Animals; D030561:Databases, Nucleic Acid; D005787:Gene Frequency; D023281:Genomics; D005838:Genotype; D006801:Humans; D020407:Internet; D015810:Linkage Disequilibrium; D051379:Mice; D020641:Polymorphism, Single Nucleotide; D051381:Rats; D011995:Recombination, Genetic; D016415:Sequence Alignment; D014584:User-Computer Interface