title: Plasmid pBP136 from Bordetella pertussis represents an ancestral form of IncP-1beta plasmids without accessory mobile elements.
abstract: The complete 41,268 bp nucleotide sequence of the IncP-1beta plasmid pBP136 from the human pathogen Bordetella pertussis, the primary aetiological agent of whooping cough, was determined and analysed. This plasmid carried a total of 46 ORFs: 44 ORFs corresponding to the genes in the conserved IncP-1beta backbone, and 2 ORFs similar to the XF1596 and XF1597 genes with unknown function of the plant pathogen Xylella fastidiosa. Interestingly, pBP136 had no accessory genes carrying genetic traits such as antibiotic or mercury resistance and/or xenobiotic degradation. Moreover, pBP136 had only two of the kle genes (kleAE) that have been reported to be important for the stability of IncP-1 plasmid in Pseudomonas aeruginosa. Phylogenetic analysis of the Kle proteins revealed that the KleA and KleE of pBP136 were phylogenetically distant from those of the present IncP-1 plasmids. In contrast, IncC1 and KorC, encoded upstream and downstream of the kle genes respectively, and the replication-initiation protein, TrfA, were closely related to those of the IncP-1beta 'R751 group'. These results suggest that (i) pBP136 without any apparent accessory genes diverged early from an ancestor of the present IncP-1beta plasmids, especially those of the R751 group, and (ii) the kle genes might be incorporated independently into the backbone region of the IncP-1 plasmids for their stable maintenance in various host cells.
authors.affiliation: Department of Bacterial Pathogenesis and Infection Control, National Institute of Infectious Diseases, 4-7-1 Gakuen, Musashimurayma, Tokyo 208-0011, Japan.
authors.forename: Kazunari
authors.initials: K
authors.lastname: Kamachi
authors.affiliation: Department of Biological Sciences, University of Idaho, Moscow, ID 83844-3051, USA.
authors.forename: Masahiro
authors.initials: M
authors.lastname: Sota
authors.affiliation: Department of Pediatrics, Oita Prefectural Hospital, 476 Bunyo, Oita 870-8511, Japan.
authors.forename: Yuji
authors.initials: Y
authors.lastname: Tamai
authors.affiliation: Department of Pathology, National Institute of Infectious Diseases, 4-7-1 Gakuen, Musashimurayma, Tokyo 208-0011, Japan.
authors.forename: Noriyo
authors.initials: N
authors.lastname: Nagata
authors.affiliation: Department of Bacterial Pathogenesis and Infection Control, National Institute of Infectious Diseases, 4-7-1 Gakuen, Musashimurayma, Tokyo 208-0011, Japan.
authors.forename: Toshifumi
authors.initials: T
authors.lastname: Konda
authors.affiliation: Department of Pediatrics, Oita Prefectural Hospital, 476 Bunyo, Oita 870-8511, Japan.
authors.forename: Toshiro
authors.initials: T
authors.lastname: Inoue
authors.affiliation: Department of Biological Sciences, University of Idaho, Moscow, ID 83844-3051, USA.
authors.forename: Eva M
authors.initials: EM
authors.lastname: Top
authors.affiliation: Department of Bacterial Pathogenesis and Infection Control, National Institute of Infectious Diseases, 4-7-1 Gakuen, Musashimurayma, Tokyo 208-0011, Japan.
authors.forename: Yoshichika
authors.initials: Y
authors.lastname: Arakawa
mesh_terms: D001426:Bacterial Proteins / Q000235:genetics; D042483:Bordetella parapertussis / Q000145:classification / Q000235:genetics*; D004261:DNA Replication / Q000235:genetics; D004269:DNA, Bacterial / Q000235:genetics*; D004351:Drug Resistance / Q000235:genetics; D019143:Evolution, Molecular; D023061:Gene Order; D005798:Genes, Bacterial; D008969:Molecular Sequence Data; D016366:Open Reading Frames; D010802:Phylogeny; D010957:Plasmids / Q000235:genetics*; D011995:Recombination, Genetic; D017422:Sequence Analysis, DNA; D017385:Sequence Homology; D044167:Xylella / Q000235:genetics
chemical_list: D001426:Bacterial Proteins; D004269:DNA, Bacterial