Family of Tc1-like elements from fish genomes and horizontal transfer.
The involvement of horizontal transfer (HT) in the evolution of vertebrate transposable elements (TEs) is a matter of an ongoing debate. The phylogenetic relationships between Tc1 TEs, based on limited dataset have been previously used to infer a case of Tc1 HT between the genomes of fish and frogs. Here this hypothesis has been critically evaluated by the experimental approach including comparative data on the range of fish species available today. The distribution of a Tc1 subfamily of TE in selected fish species was investigated by PCR with a single primer complementary to ITRs and showed that they are widespread in the studied 17 fish species. They belong to five different subfamilies of Tc1 TEs, as revealed by the comparison with current genomic data for fish and amphibians. The original hypothesis would get much weaker support from the current data, although at least one novel potential and more convincing case of HT was identified between genomes of Perciformes fish. An interesting case of recombination-driven mobilisation of a degenerated TE by distantly related TE from different subfamily was discovered in the genome of pike. The occurrence of such cases widens the range of TE elements identifiable with the employed experimental approach. Further similar studies would help to explain the evolution of the multiple Tc1 lineages including species for which full genome sequences will not be available soon.
Pocwierz-Kotus
Anita
A
Department of Genetics and Marine Biotechnology, Institute of Oceanology, Polish Academy of Sciences, Sw. Wojciecha 5, 81-347 Gdynia, Poland.
Burzynski
Artur
A
Wenne
Roman
R
D000818:Animals; D001483:Base Sequence; D015139:Blotting, Southern; D003001:Cloning, Molecular; D017931:DNA Primers / Q000235:genetics; D004251:DNA Transposable Elements; D004268:DNA-Binding Proteins / Q000235:genetics; D019143:Evolution, Molecular; D005399:Fishes / Q000145:classification / Q000235:genetics*; D022761:Gene Transfer, Horizontal; D016678:Genome; D010802:Phylogeny; D016133:Polymerase Chain Reaction; D019895:Transposases / Q000235:genetics
D017931:DNA Primers; D004251:DNA Transposable Elements; D004268:DNA-Binding Proteins; C081454:Tc1 transposase; D019895:Transposases