title: Fine mapping of S32(t), a new gene causing hybrid embryo sac sterility in a Chinese landrace rice (Oryza sativa L.).
abstract: Ketan Nangka, the donor of wide compatibility genes, showed sterility when crossed to Tuanguzao, a landrace rice from Yunnan province, China. Genetic and cytological analyses revealed that the semi-sterility was primarily caused by partial abortion of the embryo sac. Genome-wide analysis of the linkage map constructed from the backcross population of Tuanguzao/Ketan Nangka//Ketan Nangka identified two independent loci responsible for the hybrid sterility located on chromosomes 2 and 5, which explained 18.6 and 20.1% of phenotypic variance, respectively. The gene on chromosome 5 mapped to the previously reported sterility gene S31(t), while the gene on chromosome 2, a new hybrid sterility gene, was tentatively designated as S32(t). The BC1F2 was developed for further confirmation and fine mapping of S32(t). The gene S32(t) was precisely mapped to the same region as that detected in the BC1F1 but its position was narrowed down to an interval of about 1.9 cM between markers RM236 and RM12475. By assaying the recombinant events in the BC1F2, S32(t) was further narrowed down to a 64 kb region on the same PAC clone. Sequence analysis of this fragment revealed seven predicted open reading frames, four of which encoded known proteins and three encoded putative proteins. Further analyses showed that wide-compatibility variety Dular had neutral alleles at loci S31(t) and S32(t) that can overcome the sterilities caused by these two genes. These results are useful for map-based cloning of S32(t) and for marker-assisted transferring of the neutral allele in hybrid rice breeding.
authors.affiliation: National Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Plant Gene Engineering Research Center, Nanjing Agricultural University, 210095 Nanjing, China.
authors.forename: Danting
authors.initials: D
authors.lastname: Li
authors.forename: Liangming
authors.initials: L
authors.lastname: Chen
authors.forename: Ling
authors.initials: L
authors.lastname: Jiang
authors.forename: Susong
authors.initials: S
authors.lastname: Zhu
authors.forename: Zhigang
authors.initials: Z
authors.lastname: Zhao
authors.forename: Shijia
authors.initials: S
authors.lastname: Liu
authors.forename: Ning
authors.initials: N
authors.lastname: Su
authors.forename: Huqu
authors.initials: H
authors.lastname: Zhai
authors.forename: Hiroshi
authors.initials: H
authors.lastname: Ikehashi
authors.forename: Jianmin
authors.initials: J
authors.lastname: Wan
mesh_terms: D020029:Base Pairing; D002681:China; D032461:Chromosomes, Plant / Q000235:genetics; D003433:Crosses, Genetic; D017343:Genes, Plant; D008040:Genetic Linkage; D005819:Genetic Markers; D005838:Genotype; D006824:Hybridization, Genetic; D012275:Oryza / Q000235:genetics*; D020161:Physical Chromosome Mapping; D051479:Plant Infertility / Q000235:genetics*; D019655:Quantitative Trait, Heritable; D012639:Seeds / Q000235:genetics*
chemical_list: D005819:Genetic Markers