PEDANT genome database: 10 years online.
The PEDANT genome database provides exhaustive annotation of 468 genomes by a broad set of bioinformatics algorithms. We describe recent developments of the PEDANT Web server. The all-new Graphical User Interface (GUI) implemented in Javatrade mark allows for more efficient navigation of the genome data, extended search capabilities, user customization and export facilities. The DNA and Protein viewers have been made highly dynamic and customizable. We also provide Web Services to access the entire body of PEDANT data programmatically. Finally, we report on the application of association rule mining for automatic detection of potential annotation errors. PEDANT is freely accessible to academic users at http://pedant.gsf.de.
Riley
M Louise
ML
Institute for Bioinformatics, GSF-National Research Center for Health and Environment, Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.
Schmidt
Thorsten
T
Artamonova
Irena I
II
Wagner
Christian
C
Volz
Andreas
A
Heumann
Klaus
K
Mewes
Hans-Werner
HW
Frishman
Dmitrij
D
D003196:Computer Graphics; D030541:Databases, Genetic / Q000592:standards; D023281:Genomics; D020407:Internet; D011506:Proteins / Q000235:genetics; D020539:Sequence Analysis, Protein; D014584:User-Computer Interface
D011506:Proteins