title: SINE elements of Entamoeba dispar.
abstract: Entamoeba histolytica and E. dispar are closely related protozoan parasites; the former causes clinical amoebiasis in humans while the latter appears to be non-pathogenic. The molecular biology of E. histolytica shows a number of unusual features, one of which is the abundance of polyadenylated but apparently untranslatable mRNAs produced; many of these are the product of at least three families of SINEs (EhSINE1-3). Here we show that the genome of E. dispar contains numerous copies of a SINE element (EdSINE1) whose 5'- and 3'-ends are very similar to those of EhSINE1 but with a much less similar middle portion. Twelve out of 18 copies examined had target site duplications. In none out of six cases examined was there a SINE element in the homologous region of the E. histolytica genome but a single copy of EdSINE1 is present in E. histolytica where it is identified as EhSINE3.
authors.affiliation: Department of Infectious & Tropical Diseases, London School of Hygiene & Tropical Medicine, Keppel Street, London WC1E 7HT, UK. shire.abdirashid@mayo.edu
authors.forename: Abdirashid M
authors.initials: AM
authors.lastname: Shire
authors.forename: John P
authors.initials: JP
authors.lastname: Ackers
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D015152:Blotting, Northern; D015139:Blotting, Southern; D016054:DNA, Protozoan / Q000737:chemistry / Q000235:genetics; D004747:Entamoeba / Q000235:genetics*; D018503:Genome, Protozoan; D008969:Molecular Sequence Data; D016133:Polymerase Chain Reaction; D012333:RNA, Messenger / Q000235:genetics*; D022661:RNA, Untranslated / Q000235:genetics; D017422:Sequence Analysis, DNA; D012689:Sequence Homology, Nucleic Acid; D020086:Short Interspersed Nucleotide Elements
chemical_list: D016054:DNA, Protozoan; D012333:RNA, Messenger; D022661:RNA, Untranslated