New developments in the InterPro database.
InterPro is an integrated resource for protein families, domains and functional sites, which integrates the following protein signature databases: PROSITE, PRINTS, ProDom, Pfam, SMART, TIGRFAMs, PIRSF, SUPERFAMILY, Gene3D and PANTHER. The latter two new member databases have been integrated since the last publication in this journal. There have been several new developments in InterPro, including an additional reading field, new database links, extensions to the web interface and additional match XML files. InterPro has always provided matches to UniProtKB proteins on the website and in the match XML file on the FTP site. Additional matches to proteins in UniParc (UniProt archive) are now available for download in the new match XML files only. The latest InterPro release (13.0) contains more than 13 000 entries, covering over 78% of all proteins in UniProtKB. The database is available for text- and sequence-based searches via a webserver (http://www.ebi.ac.uk/interpro), and for download by anonymous FTP (ftp://ftp.ebi.ac.uk/pub/databases/interpro). The InterProScan search tool is now also available via a web service at http://www.ebi.ac.uk/Tools/webservices/WSInterProScan.html.
Mulder
Nicola J
NJ
EMBL Outstation-European Bioinformatics Institute Hinxton, Cambridge, UK. mulder@ebi.ac.uk
Apweiler
Rolf
R
Attwood
Teresa K
TK
Bairoch
Amos
A
Bateman
Alex
A
Binns
David
D
Bork
Peer
P
Buillard
Virginie
V
Cerutti
Lorenzo
L
Copley
Richard
R
Courcelle
Emmanuel
E
Das
Ujjwal
U
Daugherty
Louise
L
Dibley
Mark
M
Finn
Robert
R
Fleischmann
Wolfgang
W
Gough
Julian
J
Haft
Daniel
D
Hulo
Nicolas
N
Hunter
Sarah
S
Kahn
Daniel
D
Kanapin
Alexander
A
Kejariwal
Anish
A
Labarga
Alberto
A
Langendijk-Genevaux
Petra S
PS
Lonsdale
David
D
Lopez
Rodrigo
R
Letunic
Ivica
I
Madera
Martin
M
Maslen
John
J
McAnulla
Craig
C
McDowall
Jennifer
J
Mistry
Jaina
J
Mitchell
Alex
A
Nikolskaya
Anastasia N
AN
Orchard
Sandra
S
Orengo
Christine
C
Petryszak
Robert
R
Selengut
Jeremy D
JD
Sigrist
Christian J A
CJ
Thomas
Paul D
PD
Valentin
Franck
F
Wilson
Derek
D
Wu
Cathy H
CH
Yeats
Corin
C
D030562:Databases, Protein; D020407:Internet; D017434:Protein Structure, Tertiary; D011506:Proteins / Q000737:chemistry / Q000145:classification / Q000502:physiology; D020539:Sequence Analysis, Protein; D018511:Systems Integration; D014584:User-Computer Interface
D011506:Proteins