title: Integrative molecular concept modeling of prostate cancer progression.
abstract: Despite efforts to profile prostate cancer, the genetic alterations and biological processes that correlate with the observed histological progression are unclear. Using laser-capture microdissection to isolate 101 cell populations, we have profiled prostate cancer progression from benign epithelium to metastatic disease. By analyzing expression signatures in the context of over 14,000 'molecular concepts', or sets of biologically connected genes, we generated an integrative model of progression. Molecular concepts that demarcate critical transitions in progression include protein biosynthesis, E26 transformation-specific (ETS) family transcriptional targets, androgen signaling and cell proliferation. Of note, relative to low-grade prostate cancer (Gleason pattern 3), high-grade cancer (Gleason pattern 4) shows an attenuated androgen signaling signature, similar to metastatic prostate cancer, which may reflect dedifferentiation and explain the clinical association of grade with prognosis. Taken together, these data show that analyzing gene expression signatures in the context of a compendium of molecular concepts is useful in understanding cancer biology.
authors.affiliation: Department of Pathology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
authors.forename: Scott A
authors.initials: SA
authors.lastname: Tomlins
authors.forename: Rohit
authors.initials: R
authors.lastname: Mehra
authors.forename: Daniel R
authors.initials: DR
authors.lastname: Rhodes
authors.forename: Xuhong
authors.initials: X
authors.lastname: Cao
authors.forename: Lei
authors.initials: L
authors.lastname: Wang
authors.forename: Saravana M
authors.initials: SM
authors.lastname: Dhanasekaran
authors.forename: Shanker
authors.initials: S
authors.lastname: Kalyana-Sundaram
authors.forename: John T
authors.initials: JT
authors.lastname: Wei
authors.forename: Mark A
authors.initials: MA
authors.lastname: Rubin
authors.forename: Kenneth J
authors.initials: KJ
authors.lastname: Pienta
authors.forename: Rajal B
authors.initials: RB
authors.lastname: Shah
authors.forename: Arul M
authors.initials: AM
authors.lastname: Chinnaiyan
mesh_terms: D000728:Androgens / Q000378:metabolism; D018450:Disease Progression; D020869:Gene Expression Profiling; D006801:Humans; D008297:Male; D008962:Models, Theoretical; D009362:Neoplasm Metastasis; D011470:Prostatic Hyperplasia / Q000235:genetics / Q000473:pathology; D019048:Prostatic Intraepithelial Neoplasia / Q000235:genetics / Q000473:pathology; D011471:Prostatic Neoplasms / Q000235:genetics* / Q000473:pathology*; D015398:Signal Transduction; D018511:Systems Integration
chemical_list: D000728:Androgens