title: Time-resolved detection probe for homogeneous nucleic acid analyses in one-step format.
abstract: We report here an extension of homogeneous assays based on fluorescence intensity and lifetime measuring on DNA hybridization. A novel decay probe that allows simple one-step nucleic acid detection with subnanomolar sensitivity, and is suitable for closed-tube applications, is introduced. The decay probe uses fluorescence resonance energy transfer (FRET) between a europium chelate donor and an organic fluorophore acceptor. The substantial change in the acceptor emission decay time on hybridization with the target sequence allows the direct separation of the hybridized and unhybridized probe populations in a time-resolved measurement. No additional sample manipulation or self-hybridization of the probes is required. The wavelength and decay time of a decay probe can be adjusted according to the selection of probe length and acceptor fluorophore, thereby making the probes applicable to multiplexed assays. Here we demonstrate the decay probe principle and decay probe-based, one-step, dual DNA assay using celiac disease-related target oligonucleotides (single-nucleotide polymorphisms [SNPs]) as model analytes. Decay probes showed specific response for their complementary DNA target and allowed good signal deconvolution based on simultaneous optical and temporal filtering. This technique potentially could be used to further increase the number of simultaneously detected DNA targets in a simple one-step homogeneous assay.
authors.affiliation: PerkinElmer Life and Analytical Sciences, Wallac, Fin-20101 Turku, Finland. ville.laitala@perkinelmer.com
authors.forename: Ville
authors.initials: V
authors.lastname: Laitala
authors.forename: Alice
authors.initials: A
authors.lastname: Ylikoski
authors.forename: Hanna-Mari
authors.initials: HM
authors.lastname: Raussi
authors.forename: Pia
authors.initials: P
authors.lastname: Ollikka
authors.forename: Ilkka
authors.initials: I
authors.lastname: Hemmilä
mesh_terms: D001483:Base Sequence; D004247:DNA / Q000737:chemistry* / Q000235:genetics*; D005063:Europium; D031541:Fluorescence Resonance Energy Transfer / Q000379:methods; D005456:Fluorescent Dyes; D028581:Lanthanoid Series Elements; D009693:Nucleic Acid Hybridization; D009838:Oligodeoxyribonucleotides / Q000737:chemistry; D016133:Polymerase Chain Reaction; D013056:Spectrophotometry, Ultraviolet
chemical_list: D005456:Fluorescent Dyes; D028581:Lanthanoid Series Elements; D009838:Oligodeoxyribonucleotides; D005063:Europium; D004247:DNA