Dynamics of the nitroxide side chain in spin-labeled proteins.
The dynamics of the tether linking methanethiosulfonate (MTSSL) spin probes to alpha-helices has been investigated with the purpose of rationalizing its effects on ESR line shapes. Torsional profiles for the chain bonds have been calculated ab initio, and steric interactions with the alpha-helix and the neighboring residues have been introduced at the excluded-volume level. As a consequence of the restrictions deriving from chain geometry and local constraints, a limited number of allowed conformers has been identified that undergo torsional oscillations and conformational jumps. Torsional fluctuations are described as damped oscillations, while transition rates between conformers are calculated according to the Langer multidimensional extension of the Kramers theory. The time scale and amplitude of the different motions are compared; the major role played by rotations of the outermost bonds of the side chain emerges, along with the effects of substituents in the pyrroline ring on the conformer distribution and dynamics. The extent and symmetry of magnetic tensor averaging produced by the side chain motions are estimated, the implications for the ESR spectra of spin-labeled proteins are discussed, and suggestions for the introduction of realistic features of the spin probe dynamics into the line shape simulation are presented.
Tombolato
Fabio
F
Dipartimento di Scienze Chimiche, Via Marzolo 1, Università di Padova, 35131 Padova, Italy.
Ferrarini
Alberta
A
Freed
Jack H
JH
D008958:Models, Molecular; D009589:Nitrogen Oxides / Q000737:chemistry*; D011506:Proteins / Q000737:chemistry*; D013113:Spin Labels
D009589:Nitrogen Oxides; D011506:Proteins; D013113:Spin Labels