title: The rice kinase database. A phylogenomic database for the rice kinome.
abstract: The rice (Oryza sativa) genome contains 1,429 protein kinases, the vast majority of which have unknown functions. We created a phylogenomic database (http://rkd.ucdavis.edu) to facilitate functional analysis of this large gene family. Sequence and genomic data, including gene expression data and protein-protein interaction maps, can be displayed for each selected kinase in the context of a phylogenetic tree allowing for comparative analysis both within and between large kinase subfamilies. Interaction maps are easily accessed through links and displayed using Cytoscape, an open source software platform. Chromosomal distribution of all rice kinases can also be explored via an interactive interface.
authors.affiliation: United States Department of Agriculture-Agricultural Research Service, Appalachian Fruit Research Station, Kearneysville, West Virginia 25430, USA.
authors.forename: Christopher
authors.initials: C
authors.lastname: Dardick
authors.forename: Johann
authors.initials: J
authors.lastname: Chen
authors.forename: Todd
authors.initials: T
authors.lastname: Richter
authors.forename: Shu
authors.initials: S
authors.lastname: Ouyang
authors.forename: Pamela
authors.initials: P
authors.lastname: Ronald
mesh_terms: D020816:Amino Acid Motifs; D001483:Base Sequence; D002874:Chromosome Mapping; D032461:Chromosomes, Plant; D004251:DNA Transposable Elements / Q000235:genetics; D018744:DNA, Plant; D016208:Databases, Factual; D018745:Genome, Plant; D008969:Molecular Sequence Data; D016254:Mutagenesis, Insertional; D012275:Oryza / Q000145:classification / Q000201:enzymology* / Q000235:genetics*; D010770:Phosphotransferases / Q000235:genetics* / Q000378:metabolism; D010802:Phylogeny; D011485:Protein Binding
chemical_list: D004251:DNA Transposable Elements; D018744:DNA, Plant; D010770:Phosphotransferases