title: Following photoinduced dynamics in bacteriorhodopsin with 7-fs impulsive vibrational spectroscopy.
abstract: Sub-10-fs laser pulses are used to impulsively photoexcite bacteriorhodopsin (BR) suspensions and probe the evolution of the resulting vibrational wave packets. Fourier analysis of the spectral modulations induced by transform-limited as well as linearly chirped excitation pulses allows the delineation of excited- and ground-state contributions to the data. On the basis of amplitude and phase variations of the modulations as a function of the dispersed probe wavelength, periodic modulations in absorption above 540 nm are assigned to ground-state vibrational coherences induced by resonance impulsive Raman spectral activity (RISRS). Probing at wavelengths below 540 nm-the red edge of the intense excited-state absorption band-uncovers new vibrational features which are accordingly assigned to wave packet motions along bound coordinates on the short-lived reactive electronic surface. They consist of high- and low-frequency shoulders adjacent to the strong C=C stretching and methyl rock modes, respectively, which have ground-state frequencies of 1008 and 1530 cm-1. Brief activity centered at approximately 900 cm-1, which is characteristic of ground-state HOOP modes, and strong modulations in the torsional frequency range appear as well. Possible assignments of the bands and their implication to photoinduced reaction dynamics in BR are discussed. Reasons for the absence of similar signatures in the pump-probe spectral modulations at longer probing wavelengths are considered as well.
authors.affiliation: Department of Physical Chemistry and the Farkas Center for Light Induced Processes, Hebrew University, Jerusalem 91904, Israel.
authors.forename: Anat
authors.initials: A
authors.lastname: Kahan
authors.forename: Omer
authors.initials: O
authors.lastname: Nahmias
authors.forename: Noga
authors.initials: N
authors.lastname: Friedman
authors.forename: Mordechai
authors.initials: M
authors.lastname: Sheves
authors.forename: Sanford
authors.initials: S
authors.lastname: Ruhman
mesh_terms: D000042:Absorption; D001436:Bacteriorhodopsins / Q000737:chemistry* / Q000502:physiology; D008962:Models, Theoretical; D010777:Photochemistry; D012242:Rhodobacter sphaeroides / Q000502:physiology*; D013059:Spectrum Analysis, Raman / Q000379:methods; D013997:Time Factors
chemical_list: D001436:Bacteriorhodopsins