title: Functional genomics analysis of low concentration of ethanol in human hepatocellular carcinoma (HepG2) cells. Role of genes involved in transcriptional and translational processes.
abstract: We previously found that ethanol at millimolar level (1 mM) activates the expression of transcription factors with subsequent regulation of apoptotic genes in human hepatocellular carcinoma (HCC) HepG2 cells. However, the role of ethanol on the expression of genes implicated in transcriptional and translational processes remains unknown. Therefore, the aim of this study was to characterize the effect of low concentration of ethanol on gene expression profiling in HepG2 cells using cDNA microarrays with especial interest in genes with transcriptional and translational function. The gene expression pattern observed in the ethanol-treated HepG2 cells revealed a relatively similar pattern to that found in the untreated control cells. The pairwise comparison analysis demonstrated four significantly up-regulated (COBRA1, ITGB4, STAU2, and HMGN3) genes and one down-regulated (ANK3) gene. All these genes exert their function on transcriptional and translational processes and until now none of these genes have been associated with ethanol. This functional genomic analysis demonstrates the reported interaction between ethanol and ethanol-regulated genes. Moreover, it confirms the relationship between ethanol-regulated genes and various signaling pathways associated with ethanol-induced apoptosis. The data presented in this study represents an important contribution toward the understanding of the molecular mechanisms of ethanol at low concentration in HepG2 cells, a HCC-derived cell line.
authors.affiliation: Laboratory for Molecular Pathobiochemistry and Clinical Research, Max Planck Institute of Molecular Physiology, Dortmund, Germany. francisco.castaneda@mpi-dortmund.mpg.de
authors.forename: Francisco
authors.initials: F
authors.lastname: Castaneda
authors.forename: Sigrid
authors.initials: S
authors.lastname: Rosin-Steiner
authors.forename: Klaus
authors.initials: K
authors.lastname: Jung
mesh_terms: D006528:Carcinoma, Hepatocellular / Q000235:genetics*; D002478:Cells, Cultured; D000431:Ethanol / Q000494:pharmacology*; D020869:Gene Expression Profiling; D024001:HMGN Proteins / Q000235:genetics; D006801:Humans; D039663:Integrin beta4 / Q000235:genetics; D008113:Liver Neoplasms / Q000235:genetics*; D009687:Nuclear Proteins / Q000235:genetics; D020411:Oligonucleotide Array Sequence Analysis; D014176:Protein Biosynthesis / Q000235:genetics*; D020133:Reverse Transcriptase Polymerase Chain Reaction; D015398:Signal Transduction; D014157:Transcription Factors; D014158:Transcription, Genetic / Q000235:genetics*
chemical_list: D024001:HMGN Proteins; C059834:ITGB4 protein, human; D039663:Integrin beta4; D009687:Nuclear Proteins; D014157:Transcription Factors; C118437:negative elongation factor; D000431:Ethanol