title: A 40.7 kDa Rpp30/Rpp1 homologue is a protein subunit of Dictyostelium discoideum RNase P holoenzyme.
abstract: RNase P is an essential and ubiquitous endonuclease that mediates the maturation of the 5' ends of all precursor tRNA molecules. The holoenzyme from Dictyostelium discoideum possesses RNA and protein subunits essential for activity, but the exact composition of the ribonucleoprotein complex is still under investigation. Bioinformatic analysis of D. discoideum genome identified seven open reading frames encoding candidate RNase P protein subunits. The gene named drpp30 encodes a protein with a predicted molecular mass of 40.7 kDa that clusters with Rpp1 and Rpp30 RNase P protein subunits from Saccharomyces cerevisiae and human respectively, which have significantly lower molecular masses. Cloning and heterologous expression of DRpp30 followed by immunochemical analysis of RNase P active fractions demonstrates its association with RNase P holoenzyme. Furthermore, we show that DRpp30 can bind D. discoideum RNase P RNA and tRNA transcripts in vitro, giving a first insight of its possible role in D. discoideum RNase P function. Homology modeling using as a template the archaeal Ph1887p, and molecular dynamics simulations of the modeled structure suggest that DRpp30 adopts a TIM-barrel fold.
authors.affiliation: Department of Biochemistry, School of Medicine, University of Patras, Greece.
authors.forename: Anastassios
authors.initials: A
authors.lastname: Vourekas
authors.forename: Dimitra
authors.initials: D
authors.lastname: Kalavrizioti
authors.forename: Ioannis K
authors.initials: IK
authors.lastname: Zarkadis
authors.forename: Georgios A
authors.initials: GA
authors.lastname: Spyroulias
authors.forename: Constantinos
authors.initials: C
authors.lastname: Stathopoulos
authors.forename: Denis
authors.initials: D
authors.lastname: Drainas
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D003001:Cloning, Molecular; D003198:Computer Simulation; D018076:DNA, Complementary / Q000737:chemistry / Q000235:genetics; D004023:Dictyostelium / Q000201:enzymology* / Q000235:genetics; D024202:Electrophoretic Mobility Shift Assay; D020035:Holoenzymes / Q000737:chemistry / Q000235:genetics / Q000378:metabolism*; D047468:Immunoprecipitation; D008958:Models, Molecular; D008969:Molecular Sequence Data; D008970:Molecular Weight; D011485:Protein Binding; D017433:Protein Structure, Secondary; D021122:Protein Subunits / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D015800:Protozoan Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism*; D043262:Ribonuclease P / Q000737:chemistry / Q000235:genetics / Q000378:metabolism*; D017422:Sequence Analysis, DNA; D017386:Sequence Homology, Amino Acid
chemical_list: D018076:DNA, Complementary; D020035:Holoenzymes; D021122:Protein Subunits; D015800:Protozoan Proteins; D043262:Ribonuclease P