title: Two splicing isoforms of the Y-box protein ctYB-1 appear on the same mRNA molecule.
abstract: Y-box proteins constitute an evolutionarily conserved family of DNA- and RNA-binding proteins involved in the regulation of transcription and translation. In the dipteran Chironomus tentans, a homologue to the vertebrate Y-box protein YB-1 was recently characterized and designated ctYB-1. It is transferred from nucleus to cytoplasm bound to mRNA and is likely to affect translation. It appears in two size variants, p40 and p50. We further analysed the two size variants and their interaction with mRNA. Southern blot analysis, in situ hybridization and RT-PCR analysis suggested that there is just one YB-1 gene, and that the two size variants represent splicing isoforms. In a C. tentans epithelial cell line, only p40 is present, whereas both variants appear together in eight tissues from fourth-instar larvae, although in somewhat different proportions. Furthermore, the appearance of the two isoforms was studied in relation to a specific 35-40 kb mRNA transcript in the salivary glands, the Balbiani ring mRNA. Because of their exceptional size, Balbiani ring messenger ribonucleoprotein particles in nucleoplasm and Balbiani ring polysomes in cytoplasm could be identified and selectively studied. We were able to establish that both isoforms are associated with both nuclear and cytoplasmic Balbiani ring mRNA. In addition, a p50-specific antibody coimmunoprecipitated p40 from Balbiani ring polysomes, suggesting that the two splicing isoforms are located along the same Balbiani ring mRNA molecule. The functional significance of the two isoforms is being discussed.
authors.affiliation: Department of Cell and Molecular Biology, Medical Nobel Institute, Karolinska Institutet, Stockholm, Sweden.
authors.forename: Dmitry
authors.initials: D
authors.lastname: Nashchekin
authors.forename: Sergej
authors.initials: S
authors.lastname: Masich
authors.forename: Teresa
authors.initials: T
authors.lastname: Soop
authors.forename: Alexander
authors.initials: A
authors.lastname: Kukalev
authors.forename: Elizaveta
authors.initials: E
authors.lastname: Kovrigina
authors.forename: Oxana
authors.initials: O
authors.lastname: Nashchekina
authors.forename: Bertil
authors.initials: B
authors.lastname: Daneholt
mesh_terms: D000818:Animals; D002467:Cell Nucleus / Q000378:metabolism; D002683:Chironomidae / Q000235:genetics / Q000378:metabolism; D003593:Cytoplasm; D047468:Immunoprecipitation; D017403:In Situ Hybridization; D019476:Insect Proteins / Q000235:genetics* / Q000378:metabolism; D007814:Larva / Q000378:metabolism; D011132:Polyribosomes / Q000378:metabolism; D020033:Protein Isoforms / Q000235:genetics / Q000378:metabolism; D012326:RNA Splicing; D012333:RNA, Messenger / Q000378:metabolism*; D012469:Salivary Glands / Q000378:metabolism; D051840:Y-Box-Binding Protein 1 / Q000235:genetics* / Q000378:metabolism
chemical_list: D019476:Insect Proteins; D020033:Protein Isoforms; D012333:RNA, Messenger; D051840:Y-Box-Binding Protein 1