title: Exploring the use of random regression models with legendre polynomials to analyze measures of volume of ejaculate in Holstein bulls.
abstract: Artificial insemination centers routinely collect records of quantity and quality of semen of bulls throughout the animals' productive period. The goal of this paper was to explore the use of random regression models with orthogonal polynomials to analyze repeated measures of semen production of Spanish Holstein bulls. A total of 8,773 records of volume of first ejaculate (VFE) collected between 12 and 30 mo of age from 213 Spanish Holstein bulls was analyzed under alternative random regression models. Legendre polynomial functions of increasing order (0 to 6) were fitted to the average trajectory, additive genetic and permanent environmental effects. Age at collection and days in production were used as time variables. Heterogeneous and homogeneous residual variances were alternatively assumed. Analyses were carried out within a Bayesian framework. The logarithm of the marginal density and the cross-validation predictive ability of the data were used as model comparison criteria. Based on both criteria, age at collection as a time variable and heterogeneous residuals models are recommended to analyze changes of VFE over time. Both criteria indicated that fitting random curves for genetic and permanent environmental components as well as for the average trajector improved the quality of models. Furthermore, models with a higher order polynomial for the permanent environmental (5 to 6) than for the genetic components (4 to 5) and the average trajectory (2 to 3) tended to perform best. High-order polynomials were needed to accommodate the highly oscillating nature of the phenotypic values. Heritability and repeatability estimates, disregarding the extremes of the studied period, ranged from 0.15 to 0.35 and from 0.20 to 0.50, respectively, indicating that selection for VFE may be effective at any stage. Small differences among models were observed. Apart from the extremes, estimated correlations between ages decreased steadily from 0.9 and 0.4 for measures 1 mo apart to 0.4 and 0.2 for most distant measures for additive genetic and phenotypic components, respectively. Further investigation to account for environmental factors that may be responsible for the oscillating observations of VFE is needed.
authors.affiliation: Departamento de Mejora Genética Animal, INIA, 28040 Madrid, Spain. mjc@inia.es
authors.forename: M J
authors.initials: MJ
authors.lastname: Carabaño
authors.forename: C
authors.initials: C
authors.lastname: Díaz
authors.forename: C
authors.initials: C
authors.lastname: Ugarte
authors.forename: M
authors.initials: M
authors.lastname: Serrano
mesh_terms: D000375:Aging; D000818:Animals; D001947:Breeding; D002417:Cattle / Q000235:genetics / Q000502:physiology*; D004777:Environment; D005838:Genotype; D007315:Insemination, Artificial / Q000662:veterinary; D008297:Male; D015233:Models, Statistical; D010375:Pedigree; D010641:Phenotype; D012044:Regression Analysis; D012661:Semen / Q000502:physiology*; D013030:Spain