title: The Crl-RpoS regulon of Escherichia coli.
abstract: The RpoS subunit of RNA polymerase controls the expression of numerous genes involved in stationary phase and in response to different stress conditions. The regulatory protein Crl increases the activity of RpoS by direct interaction with the RpoS holoenzyme. To define the extent of the Crl regulon, we used two-dimensional SDS-PAGE to measure the role of Crl in regulating the expression of the Escherichia coliproteome in stationary phase at 30 degrees C. By comparing the proteome of four strains (wild type, crl(-), rpoS(-), and crl(-)rpoS(-)), we observed that the intensity of 74 spots was modified in at least one mutant context. 62 spots were identified by mass spectrometry and correspond to 40 distinct proteins. They were classified in four main categories: DNA metabolism, central metabolism, response to environmental modifications, and miscellaneous. Three proteins were specifically involved in quorum sensing: TnaA (the tryptophanase that converts tryptophan to indole), WrbA (Trp repressor-binding protein), and YgaG (homologous to LuxS, autoinducer-2 synthase). Because little is known about the regulation of Crl expression, we investigated the influence of diffusible molecules on the expression of Crl. Using Western blotting experiments, we showed that, at 30 degrees C, a diffusible molecule(s) produced during the transition phase between the exponential and stationary phases induces a premature expression of Crl. Indole was tested as one of the potential candidates: at 37 degrees C, it is present in the extracellular medium at a constant concentration, but at 30 degrees C, its concentration peaks during the transition phase. When indole was added to the culture medium, it also induced prematurely the expression of Crl at both the transcriptional and translational levels in a Crl-dependent manner. Crl may thus be considered a new environmental sensor via the indole concentration.
authors.affiliation: Laboratoire Adaptation et Pathogénie des Microorganismes, Institut Jean Roget, Campus de la Merci, Université Joseph Fourier, BP170, 38042 Grenoble Cedex 9, France. cecile.lelong@ujf-grenoble.fr
authors.forename: Cécile
authors.initials: C
authors.lastname: Lelong
authors.forename: Kryssia
authors.initials: K
authors.lastname: Aguiluz
authors.forename: Sylvie
authors.initials: S
authors.lastname: Luche
authors.forename: Lauriane
authors.initials: L
authors.lastname: Kuhn
authors.forename: Jérôme
authors.initials: J
authors.lastname: Garin
authors.forename: Thierry
authors.initials: T
authors.lastname: Rabilloud
authors.forename: Johannes
authors.initials: J
authors.lastname: Geiselmann
mesh_terms: D001426:Bacterial Proteins / Q000235:genetics* / Q000378:metabolism; D017077:Culture Media, Conditioned; D015180:Electrophoresis, Gel, Two-Dimensional; D048168:Escherichia coli K12 / Q000235:genetics* / Q000378:metabolism; D029968:Escherichia coli Proteins / Q000235:genetics* / Q000378:metabolism; D015964:Gene Expression Regulation, Bacterial; D016680:Genome, Bacterial; D008954:Models, Biological; D009154:Mutation; D040081:Protein Array Analysis; D040901:Proteomics; D018085:Regulon; D012808:Sigma Factor / Q000235:genetics* / Q000378:metabolism; D019032:Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
chemical_list: D001426:Bacterial Proteins; D017077:Culture Media, Conditioned; D029968:Escherichia coli Proteins; D012808:Sigma Factor; C069567:sigma factor KatF protein, Bacteria; C077481:Crl protein, Bacteria