title: Rational design of homogenous protein kinase assay platforms that allow both fluorometric and colorimetric signal readouts.
abstract: Protein kinases play important roles in signaling pathways that regulate many cellular biological processes, including apoptosis, cell growth, and differentiation in response to extracellular stimuli. Design of homogenous protein kinase assay platforms including design of potent protein kinase substrates is essential for exploration of the phosphoproteome. Here, we describe a unique chromism-based assay (CHROBA) technique for the direct measurement of protein kinase activities. The CHROBA is a novel chemosensor system that produces signals based on the photochromic and thermodynamic properties of a spiropyran derivative incorporated into peptide substrates. The CHROBA technique for detecting protein kinase activities involves the following five steps: (i) phosphorylation, (ii) photobleaching of the reaction mixture, (iii) addition of ionic polymer(s), (iv) incubation in the dark, and (v) signal readout. This simple 'end-point' assay method allows quantitative measurements of protein kinase A, Src protein tyrosine kinase, c-Abl protein tyrosine kinase, and protein kinase Calpha activities even with excess ATP. Our results showed that spiropyran-containing peptide substrates with net charges between +2 and 0 are suitable for the present CHROBA method. This information should aid in the rational design of diverse protein kinase assay platforms. The present CHROBA technique can be adapted to a microplate format with both fluorometric and colorimetric readouts and would be useful for high-throughput drug discovery and analysis of the phosphoproteome.
authors.affiliation: Department of Bioengineering and The COE21 Program, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology B-40, 4259 Nagatsuta, Midori, Yokohama, 226-8501, Japan.
authors.forename: Kin-ya
authors.initials: KY
authors.lastname: Tomizaki
authors.forename: Hisakazu
authors.initials: H
authors.lastname: Mihara
mesh_terms: D000595:Amino Acid Sequence; D001578:Benzopyrans / Q000737:chemistry; D002851:Chromatography, High Pressure Liquid; D003124:Colorimetry / Q000379:methods*; D005470:Fluorometry / Q000379:methods*; D007211:Indoles / Q000737:chemistry; D013058:Mass Spectrometry; D008969:Molecular Sequence Data; D015394:Molecular Structure; D009574:Nitro Compounds / Q000737:chemistry; D010455:Peptides / Q000138:chemical synthesis; D010766:Phosphorylation; D011494:Protein Kinases / Q000378:metabolism*; D015398:Signal Transduction; D013379:Substrate Specificity
chemical_list: D001578:Benzopyrans; D007211:Indoles; D009574:Nitro Compounds; D010455:Peptides; C088184:spiropyran; D011494:Protein Kinases