CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data.
BACKGROUND
CoCo, ChIP-on-Chip online, is an open-source web application that supports the annotation and curation of regulatory regions and associated target genes discovered in ChIP-on-chip experiments. CoCo integrates ChIP-on-chip results with diverse types of gene expression data (expression profiling, in situ hybridization) and displays them within a genomic context. Regulatory relationships between the transcription factor-bound regions and putative target genes can be stored and expanded throughout different sessions.


BACKGROUND
http://furlonglab.embl.de/methods/tools/coco.
Girardot
Charles
C
European Molecular Biology Laboratory, D-69117 Heidelberg, Germany. charles.girardot@embl.de
Sklyar
Oleg
O
Grosz
Sophie
S
Huber
Wolfgang
W
Furlong
Eileen E M
EE
D047369:Chromatin Immunoprecipitation / Q000295:instrumentation*; D002874:Chromosome Mapping / Q000379:methods*; D003196:Computer Graphics; D003628:Database Management Systems; D030541:Databases, Genetic; D020869:Gene Expression Profiling / Q000379:methods*; D016247:Information Storage and Retrieval / Q000379:methods; D020407:Internet; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D012984:Software; D018511:Systems Integration; D014584:User-Computer Interface