title: An efficient method for producing an indexed, insertional-mutant library in rice.
abstract: Generation of an indexed, saturated, insertional-mutant library is an aid to understanding the functions of genes in an organism. However, 10 years of work by many investigators have not yet yielded such a library in rice. The major reason is that determining the chromosomal locations of a very large number of random insertion mutants by flanking sequence analysis is highly labor intensive, and therefore, libraries that do exist have not been indexed. We report here an efficient procedure to construct an indexed, region-specific, insertional-mutant library of rice. The procedure makes use of efficient long-PCR-based high-throughput indexing, coupled with a random but anchored population of Ds transposants. Long-PCR indexing allows rapid and simultaneous determination of the chromosomal locations of a large number of mutants that surround a particular anchor line, thus converting a random library into an indexed one. Such a library can be used directly, without the need to screen a large random library for a desired mutant plant.
authors.affiliation: Department of Molecular Biology and Genetics, Cornell University, 316 Biotechnology Building, Ithaca, NY 14853, USA.
authors.forename: Chengkun
authors.initials: C
authors.lastname: He
authors.forename: Moul
authors.initials: M
authors.lastname: Dey
authors.forename: Zhihong
authors.initials: Z
authors.lastname: Lin
authors.forename: Faping
authors.initials: F
authors.lastname: Duan
authors.forename: Fengling
authors.initials: F
authors.lastname: Li
authors.forename: Ray
authors.initials: R
authors.lastname: Wu
mesh_terms: D002874:Chromosome Mapping / Q000379:methods; D004251:DNA Transposable Elements; D015723:Gene Library; D017343:Genes, Plant; D008722:Methods; D009154:Mutation; D012275:Oryza / Q000235:genetics*; D016133:Polymerase Chain Reaction / Q000379:methods
chemical_list: D004251:DNA Transposable Elements