title: Tripodal, cooperative, and allosteric transphosphorylation metallocatalysts.
abstract: Three artificial amino acids derived from l-serine by replacing the hydroxyl moiety with 1,4,7-triazacyclononane, 1,5,9-triazacyclododecane, and 1,4,7,10-tetraazacyclododecane, respectively, have been connected to the three arms of the tetraamine tris(2-aminoethyl)amine, Tren, to obtain tripodal ligands. They are able to bind up to four metal ions (like CuII and ZnII), three with the polyazamacrocycles and one with the Tren platform. Some of the ZnII complexes of these tripodal ligands proved to be good catalysts for the cleavage of the RNA model substrate 2-hydroxypropyl-p-nitrophenylphosphate (HPNP). Studies of the catalytic activity in the presence of increasing amounts of ZnII show that the complexes represent minimalist examples of metallocatalysts with cooperativity between the metal centers and allosteric control by a metal ion. The Tren binding site constitutes the allosteric regulation unit, while the three ZnII-azacrown complexes provide the cooperative, catalytic site. The allosteric role of the ZnII ion located in the Tren binding site was unambiguously demonstrated by studying the catalytic activity of a derivative unable to complex ZnII in that site. In this case, the cooperativity between the three ZnII ions bound to the peripheral azacrowns was totally suppressed. The kinetic analysis has shown that cooperativity is due to neither the occurrence of general-acid/general-base catalysis nor a decreased binding of the substrate because of the deprotonation of a water molecule bound to the complex but, rather, stabilization of the complexed substrate in its transformation into the transition state.
authors.affiliation: University of Padova, Department of Chemical Sciences and CNR- ITM, Padova Section, Via Marzolo, 1-35131 Padova, Italy.
authors.forename: Alessandro
authors.initials: A
authors.lastname: Scarso
authors.forename: Giovanni
authors.initials: G
authors.lastname: Zaupa
authors.forename: Florence Bodar
authors.initials: FB
authors.lastname: Houillon
authors.forename: Leonard J
authors.initials: LJ
authors.lastname: Prins
authors.forename: Paolo
authors.initials: P
authors.lastname: Scrimin
mesh_terms: D000494:Allosteric Regulation; D000596:Amino Acids / Q000138:chemical synthesis* / Q000737:chemistry; D001665:Binding Sites; D002384:Catalysis; D003300:Copper / Q000737:chemistry*; D005029:Ethylenediamines / Q000737:chemistry; D007700:Kinetics; D008024:Ligands; D008968:Molecular Conformation; D009942:Organometallic Compounds / Q000737:chemistry*; D010766:Phosphorylation; D013237:Stereoisomerism; D015032:Zinc / Q000737:chemistry*
chemical_list: D000596:Amino Acids; D005029:Ethylenediamines; D008024:Ligands; D009942:Organometallic Compounds; C099539:tris(2-aminoethyl)amine; D003300:Copper; D015032:Zinc