title: DFT study of alpha- and beta-D-allopyranose at the B3LYP/6-311++G ** level of theory.
abstract: One hundred and two conformations of alpha- and beta-D-allopyranose, the C-3 substituted epimer of glucopyranose, were geometry optimized using the density functional, B3LYP, and the basis set, 6-311++G **. Full geometry optimization was performed on different ring geometries and on the hydroxymethyl rotamers (gg/gt/tg). Analytically derived Hessians were used to calculate zero point energy, enthalpy, and entropy. The lowest energy and free energy conformation found is the alpha-tg(g-)-4C1-c conformation, which is only slightly higher in electronic (approximately 0.2 kcal/mol) and free energy than the lowest energy alpha-D-glucopyranose. The in vacuo calculations showed a small (approximately 0.3 kcal/mol) energetic preference for the alpha- over the beta-anomer for allopyranose in the 4C1 conformation, whereas in the 1C4 conformation a considerable (approximately 1.6 kcal/mol) energetic preference for the beta- over the alpha-anomer for allopyranose was encountered. The results are compared to previous aldohexose calculations in vacuo. Boat and skew forms were found that remained stable upon gradient optimization although many starting boat conformations moved to other skew forms upon optimization. As found for glucose, mannose, and galactose the orientation and interaction of the hydroxyl groups make the most significant contributions to the conformation/energy relationship in vacuo. A comparison of different basis sets and density functionals is made in the Discussion section, confirming the appropriateness of the level of theory used here.
authors.affiliation: Plant Polymer Research, USDA, ARS, National Center for Agricultural Utilization Research, 1815 N. University St., Peoria, IL 61604, USA. schnupf@ncaur.usda.gov
authors.forename: Udo
authors.initials: U
authors.lastname: Schnupf
authors.forename: J L
authors.initials: JL
authors.lastname: Willett
authors.forename: Wayne B
authors.initials: WB
authors.lastname: Bosma
authors.forename: Frank A
authors.initials: FA
authors.lastname: Momany
mesh_terms: D002236:Carbohydrate Conformation; D003198:Computer Simulation; D005690:Galactose / Q000737:chemistry; D005947:Glucose / Q000737:chemistry*; D008358:Mannose / Q000737:chemistry; D008958:Models, Molecular; D013816:Thermodynamics
chemical_list: C002055:allose; D005947:Glucose; D008358:Mannose; D005690:Galactose