title: Natural variation in partial resistance to Pseudomonas syringae is controlled by two major QTLs in Arabidopsis thaliana.
abstract: BACKGROUND
  Low-level, partial resistance is pre-eminent in natural populations, however, the mechanisms underlying this form of resistance are still poorly understood.
  
  
  RESULTS
  In the present study, we used the model pathosystem Pseudomonas syringae pv. tomato DC3000 (Pst) - Arabidopsis thaliana to study the genetic basis of this form of resistance. Phenotypic analysis of a set of Arabidopsis accessions, based on evaluation of in planta pathogen growth revealed extensive quantitative variation for partial resistance to Pst. It allowed choosing a recombinant inbred line (RIL) population derived from a cross between the accessions Bayreuth and Shahdara for quantitative genetic analysis. Experiments performed under two different environmental conditions led to the detection of two major and two minor quantitative trait loci (QTLs) governing partial resistance to Pst and called PRP-Ps1 to PRP-Ps4. The two major QTLs, PRP-Ps1 and PRP-Ps2, were confirmed in near isogenic lines (NILs), following the heterogeneous inbred families (HIFs) strategy. Analysis of marker gene expression using these HIFs indicated a negative correlation between the induced amount of transcripts of SA-dependent genes PR1, ICS and PR5, and the in planta bacterial growth in the HIF segregating at PRP-Ps2 locus, suggesting an implication of PRP-Ps2 in the activation of SA dependent responses.
  
  
  CONCLUSIONS
  These results show that variation in partial resistance to Pst in Arabidopsis is governed by relatively few loci, and the validation of two major loci opens the way for their fine mapping and their cloning, which will improve our understanding of the molecular mechanisms underlying partial resistance.
authors.affiliation: Laboratoire des Interactions Plantes-Microorganismes (LIPM), UMR Centre National de la Recherche Scientifique/National Institute for Agronomical Research 2594, Castanet-Tolosan, France.
authors.forename: Laure
authors.initials: L
authors.lastname: Perchepied
authors.forename: Thomas
authors.initials: T
authors.lastname: Kroj
authors.forename: Maurice
authors.initials: M
authors.lastname: Tronchet
authors.forename: Olivier
authors.initials: O
authors.lastname: Loudet
authors.forename: Dominique
authors.initials: D
authors.lastname: Roby
mesh_terms: D017360:Arabidopsis / Q000235:genetics* / Q000382:microbiology*; D001483:Base Sequence; D002874:Chromosome Mapping; D017931:DNA Primers / Q000235:genetics; D018744:DNA, Plant / Q000235:genetics; D015870:Gene Expression; D017343:Genes, Plant; D014644:Genetic Variation; D054884:Host-Pathogen Interactions / Q000235:genetics; D007178:Inbreeding; D010935:Plant Diseases / Q000235:genetics / Q000382:microbiology; D044224:Pseudomonas syringae / Q000472:pathogenicity*; D040641:Quantitative Trait Loci
chemical_list: D017931:DNA Primers; D018744:DNA, Plant