title: Shewanella psychrophila sp. nov. and Shewanella piezotolerans sp. nov., isolated from west Pacific deep-sea sediment.
abstract: Two Shewanella-like bacterial strains, WP2(T) and WP3(T), which were isolated from west Pacific deep-sea sediment, were studied to determine their taxonomic position. Cells of the two bacteria were facultatively anaerobic, Gram-negative rods and motile by means of a single polar flagellum. Strain WP2(T) was psychrophilic, growing optimally at about 10-15 degrees C, whereas strain WP3(T) was psychrotolerant, growing optimally at 15-20 degrees C. The two strains grew in the pressure range 0.1-50 MPa, with optimal growth at 20 MPa. Strain WP3(T) was able to use nitrate, fumarate, trimethylamine N-oxide (TMAO), DMSO and insoluble Fe(III) as terminal electron acceptors during anaerobic growth, whereas strain WP2(T) was able to use only nitrate, TMAO and DMSO. The 16S rRNA gene sequences of strains WP2(T) and WP3(T) were 97 % identical, and showed highest similarity (97 %) to those of Shewanella fidelis KMM 3589 and Shewanella benthica ATCC 43992(T), respectively. The gyrB gene sequences of strains WP2(T)and WP3 (T) were also determined, and showed highest similarity to those of Shewanella violacea JCM 10179(T) (90 %) and Shewanella sairae SM2-1(T) (87 %), respectively. Contrary to the 16S rRNA gene sequence results, the phylogeny based on gyrB gene sequence analysis placed strain WP2(T), S. violacea and S. benthica in one group, while strain WP3(T) grouped with S. fidelis and S. sairae. DNA-DNA hybridization experiments supported the placement of strain WP2(T) with S. violacea and S. benthica. Phylogenetic evidence, together with DNA-DNA relatedness and phenotypic characteristics, indicated that the two new strains represented two novel deep-sea Shewanella species. The names Shewanella psychrophila sp. nov. (type strain WP2(T)=JCM 13876(T)=CGMCC 1.6159(T)) and Shewanella piezotolerans (type strain WP3(T)=JCM 13877(T)=CGMCC 1.6160(T)) are proposed.
authors.affiliation: Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State Oceanic Administration, Xiamen, 361005, P. R. China.
authors.forename: Xiang
authors.initials: X
authors.lastname: Xiao
authors.affiliation: State Key Laboratory of Marine Geology, Tongji University, Shanghai, P. R. China.|Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State Oceanic Administration, Xiamen, 361005, P. R. China.
authors.forename: Peng
authors.initials: P
authors.lastname: Wang
authors.affiliation: Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State Oceanic Administration, Xiamen, 361005, P. R. China.
authors.forename: Xiang
authors.initials: X
authors.lastname: Zeng
authors.affiliation: Center for Marine Biotechnology and Biomedicine, Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92093-0202, USA.
authors.forename: Douglas Hoyt
authors.initials: DH
authors.lastname: Bartlett
authors.affiliation: Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State Oceanic Administration, Xiamen, 361005, P. R. China.
authors.forename: Fengping
authors.initials: F
authors.lastname: Wang
mesh_terms: D015373:Bacterial Typing Techniques; D002681:China; D003080:Cold Temperature; D004269:DNA, Bacterial / Q000032:analysis; D004275:DNA, Ribosomal / Q000032:analysis; D020459:Genes, rRNA; D019015:Geologic Sediments / Q000382:microbiology*; D008969:Molecular Sequence Data; D009693:Nucleic Acid Hybridization; D010641:Phenotype; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012623:Seawater / Q000382:microbiology*; D017422:Sequence Analysis, DNA; D020592:Shewanella / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification / Q000502:physiology
chemical_list: D004269:DNA, Bacterial; D004275:DNA, Ribosomal; D012336:RNA, Ribosomal, 16S