title: Control of macromolecular structure and function using covalently attached double-stranded DNA constraints.
abstract: The biophysical properties of DNA suggest its use for applications beyond serving as the genetic material. Several recent reports describe the use of covalently attached double-stranded DNA for controlling the structures of other macromolecules such as protein and RNA. These exploitations of DNA rigidity are conceptually distinct from many other studies in the area of "DNA nanotechnology". Double-stranded DNA constraints provide a means of introducing selective tension onto other molecules. This should facilitate fundamental investigations of macromolecular folding landscapes and tertiary interactions, as well as allow study of the mechanotransduction of biochemical signals. Use of a DNA constraint as the key element of a sensor has already been demonstrated, and such applications will be enhanced by improvements in the signal readout methods. If practical challenges such as delivery and stability can be addressed, these new efforts may also enable development of selective sensors for in vivo applications.
authors.affiliation: Department of Chemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, Illinois 61801, USA.
authors.forename: Scott K
authors.initials: SK
authors.lastname: Silverman
mesh_terms: D001483:Base Sequence; D001665:Binding Sites; D017868:Cyclic AMP-Dependent Protein Kinases / Q000737:chemistry / Q000502:physiology; D004247:DNA / Q000737:chemistry*; D046911:Macromolecular Substances; D008957:Models, Genetic; D008958:Models, Molecular; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D011487:Protein Conformation; D017434:Protein Structure, Tertiary; D011506:Proteins / Q000737:chemistry*; D012313:RNA / Q000737:chemistry*; D020871:RNA Stability; D013329:Structure-Activity Relationship
chemical_list: D046911:Macromolecular Substances; D011506:Proteins; D012313:RNA; D004247:DNA; D017868:Cyclic AMP-Dependent Protein Kinases