title: COMPARE: classification of morphological patterns using adaptive regional elements.
abstract: This paper presents a method for classification of structural brain magnetic resonance (MR) images, by using a combination of deformation-based morphometry and machine learning methods. A morphological representation of the anatomy of interest is first obtained using a high-dimensional mass-preserving template warping method, which results in tissue density maps that constitute local tissue volumetric measurements. Regions that display strong correlations between tissue volume and classification (clinical) variables are extracted using a watershed segmentation algorithm, taking into account the regional smoothness of the correlation map which is estimated by a cross-validation strategy to achieve robustness to outliers. A volume increment algorithm is then applied to these regions to extract regional volumetric features, from which a feature selection technique using support vector machine (SVM)-based criteria is used to select the most discriminative features, according to their effect on the upper bound of the leave-one-out generalization error. Finally, SVM-based classification is applied using the best set of features, and it is tested using a leave-one-out cross-validation strategy. The results on MR brain images of healthy controls and schizophrenia patients demonstrate not only high classification accuracy (91.8% for female subjects and 90.8% for male subjects), but also good stability with respect to the number of features selected and the size of SVM kernel used.
authors.affiliation: Section of Biomedical Image Analysis, Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA. yong.fan@uphs.upenn.edu
authors.forename: Yong
authors.initials: Y
authors.lastname: Fan
authors.forename: Dinggang
authors.initials: D
authors.lastname: Shen
authors.forename: Ruben C
authors.initials: RC
authors.lastname: Gur
authors.forename: Raquel E
authors.initials: RE
authors.lastname: Gur
authors.forename: Christos
authors.initials: C
authors.lastname: Davatzikos
mesh_terms: D000465:Algorithms; D001185:Artificial Intelligence; D001921:Brain / Q000473:pathology*; D006801:Humans; D007089:Image Enhancement / Q000379:methods*; D007090:Image Interpretation, Computer-Assisted / Q000379:methods*; D021621:Imaging, Three-Dimensional / Q000379:methods*; D016247:Information Storage and Retrieval / Q000379:methods; D008279:Magnetic Resonance Imaging / Q000379:methods*; D010363:Pattern Recognition, Automated / Q000379:methods*; D015203:Reproducibility of Results; D012559:Schizophrenia / Q000473:pathology*; D012680:Sensitivity and Specificity; D012984:Software