title: Liquid chromatography mass spectrometry profiling of histones.
abstract: Here we describe the use of reverse-phase liquid chromatography mass spectrometry (RPLC-MS) to simultaneously characterize variants and post-translationally modified isoforms for each histone. The analysis of intact proteins significantly reduces the time of sample preparation and simplifies data interpretation. LC-MS analysis and peptide mass mapping have previously been applied to identify histone proteins and to characterize their post-translational modifications. However, these studies provided limited characterization of both linker histones and core histones. The current LC-MS analysis allows for the simultaneous observation of all histone PTMs and variants (both replacement and bulk histones) without further enrichment, which will be valuable in comparative studies. Protein identities were verified by the analysis of histone H2A species using RPLC fractionation, AU-PAGE separation and nano-LC-MS/MS.
authors.affiliation: Department of Chemistry, Human Cancer Genetics, College of Medicine and Public Health, The Ohio State University Columbus, OH, USA.
authors.forename: Xiaodan
authors.initials: X
authors.lastname: Su
authors.forename: Naduparambil K
authors.initials: NK
authors.lastname: Jacob
authors.forename: Ravindra
authors.initials: R
authors.lastname: Amunugama
authors.forename: David M
authors.initials: DM
authors.lastname: Lucas
authors.forename: Amy R
authors.initials: AR
authors.lastname: Knapp
authors.forename: Chen
authors.initials: C
authors.lastname: Ren
authors.forename: Melanie E
authors.initials: ME
authors.lastname: Davis
authors.forename: Guido
authors.initials: G
authors.lastname: Marcucci
authors.forename: Mark R
authors.initials: MR
authors.lastname: Parthun
authors.forename: John C
authors.initials: JC
authors.lastname: Byrd
authors.forename: Richard
authors.initials: R
authors.lastname: Fishel
authors.forename: Michael A
authors.initials: MA
authors.lastname: Freitas
mesh_terms: D000595:Amino Acid Sequence; D002851:Chromatography, High Pressure Liquid / Q000379:methods*; D004591:Electrophoresis, Polyacrylamide Gel; D006657:Histones / Q000032:analysis* / Q000737:chemistry; D008969:Molecular Sequence Data; D036103:Nanotechnology; D015203:Reproducibility of Results; D053719:Tandem Mass Spectrometry / Q000379:methods*
chemical_list: D006657:Histones