Improved pulse sequences for sequence specific assignment of aromatic proton resonances in proteins.
Aromatic proton resonances of proteins are notoriously difficult to assign. Through-bond correlation experiments are preferable over experiments that rely on through-space interactions because they permit aromatic chemical shift assignments to be established independently of the structure determination process. Known experimental schemes involving a magnetization transfer across the Cbeta-Cgamma bond in aromatic side chains either suffer from low efficiency for the relay beyond the Cdelta position, use sophisticated 13C mixing schemes, require probe heads suitable for application of high 13C radio-frequency fields or rely on specialized isotopic labelling patterns. Novel methods are proposed that result in sequential assignment of all aromatic protons in uniformly 13C/15N labelled proteins using standard spectrometer hardware. Pulse sequences consist of routinely used building blocks and are therefore reasonably simple to implement. Ring protons may be correlated with beta-carbons and, alternatively, with amide protons (and nitrogens) or carbonyls in order to take advantage of the superior dispersion of backbone resonances. It is possible to record spectra in a non-selective manner, yielding signals of all aromatic residues, or as amino-acid type selective versions to further reduce ambiguities. The new experiments are demonstrated with four different proteins with molecular weights ranging from 11 kDa to 23 kDa. Their performance is compared with that of (Hbeta)Cbeta(CgammaCdelta)Hdelta and (Hbeta)Cbeta(CgammaCdeltaCepsilon)Hepsilon pulse sequences.
Löhr
Frank
F
Institute of Biophysical Chemistry, Centre for Biomolecular Magnetic Resonance, Johann Wolfgang Goethe-University, Frankfurt, Germany. murph@bpc.uni-frankfurt.de
Hänsel
Robert
R
Rogov
Vladimir V
VV
Dötsch
Volker
V
D002244:Carbon / Q000737:chemistry; D002247:Carbon Isotopes / Q000737:chemistry; D016969:Desulfovibrio vulgaris / Q000378:metabolism; D004926:Escherichia coli / Q000378:metabolism; D005420:Flavoproteins / Q000737:chemistry*; D009682:Magnetic Resonance Spectroscopy / Q000379:methods*; D008956:Models, Chemical; D008958:Models, Molecular; D009584:Nitrogen / Q000737:chemistry; D009587:Nitrogen Isotopes / Q000737:chemistry; D010088:Oxidoreductases / Q000737:chemistry*; D011506:Proteins / Q000737:chemistry*; D011522:Protons; D013879:Thioredoxins / Q000737:chemistry*
D002247:Carbon Isotopes; D005420:Flavoproteins; D009587:Nitrogen Isotopes; D011506:Proteins; D011522:Protons; D013879:Thioredoxins; D002244:Carbon; D010088:Oxidoreductases; C410951:flavoredoxin; D009584:Nitrogen