title: SAGE and antibody array analysis of melanoma-infiltrated lymph nodes: identification of Ubc9 as an important molecule in advanced-stage melanomas.
abstract: Although patients diagnosed with melanoma of </= 1.00 mm thickness have a relatively good cure rate, the prognosis for patients with locally advanced and metastatic melanoma is grave. The discovery of new and effective therapies for this disease depends in large part on molecular studies that will resolve why advanced-stage melanoma is refractory to conventional chemotherapy and radiation therapy. To identify genes that have important functions in advanced-stage melanomas, in particular, in melanoma-infiltrated lymph nodes, which are not well characterized at the molecular level, we generated a LongSAGE library from a melanoma-positive lymph node, and subjected melanoma-infiltrated lymph nodes to protein expression profiling. The data document that the molecular signature of melanoma, which has spread to regional lymph nodes, is very similar to the molecular signature of primary melanomas. Equally important, we provide evidence that the ubiquitin-conjugating enzyme, Ubc9, is expressed at high levels in melanoma-positive lymph nodes, and that it plays a crucial role in preventing advanced-stage melanomas from undergoing chemotherapy-induced apoptosis.
authors.affiliation: Department of Medicine, University of Pittsburgh, Pittsburgh, PA 15213-1863, USA.
authors.forename: S J
authors.initials: SJ
authors.lastname: Moschos
authors.forename: A P
authors.initials: AP
authors.lastname: Smith
authors.forename: M
authors.initials: M
authors.lastname: Mandic
authors.forename: C
authors.initials: C
authors.lastname: Athanassiou
authors.forename: K
authors.initials: K
authors.lastname: Watson-Hurst
authors.forename: D M
authors.initials: DM
authors.lastname: Jukic
authors.forename: H D
authors.initials: HD
authors.lastname: Edington
authors.forename: J M
authors.initials: JM
authors.lastname: Kirkwood
authors.forename: D
authors.initials: D
authors.lastname: Becker
mesh_terms: D000912:Antibodies, Neoplasm; D000951:Antigens, Neoplasm / Q000096:biosynthesis* / Q000235:genetics; D017209:Apoptosis / Q000187:drug effects / Q000276:immunology; D019008:Drug Resistance, Neoplasm; D006801:Humans; D008198:Lymph Nodes / Q000276:immunology* / Q000473:pathology*; D008545:Melanoma / Q000175:diagnosis / Q000188:drug therapy / Q000201:enzymology* / Q000473:pathology*; D009361:Neoplasm Invasiveness; D009367:Neoplasm Staging; D019151:Peptide Library; D040081:Protein Array Analysis; D014407:Tumor Cells, Cultured; D044763:Ubiquitin-Conjugating Enzymes / Q000032:analysis / Q000096:biosynthesis / Q000235:genetics / Q000276:immunology*; D000098843:Ubiquitin-Conjugating Enzyme UBC9
chemical_list: D000912:Antibodies, Neoplasm; D000951:Antigens, Neoplasm; D019151:Peptide Library; C412325:SAGE1 protein, human; D044763:Ubiquitin-Conjugating Enzymes; D000098843:Ubiquitin-Conjugating Enzyme UBC9