title: Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery.
abstract: OBJECTIVE
  The usefulness of neurosurgical navigation with current visualizations is seriously compromised by brain shift, which inevitably occurs during the course of the operation, significantly degrading the precise alignment between the pre-operative MR data and the intra-operative shape of the brain. Our objectives were (i) to evaluate the feasibility of non-rigid registration that compensates for the brain deformations within the time constraints imposed by neurosurgery, and (ii) to create augmented reality visualizations of critical structural and functional brain regions during neurosurgery using pre-operatively acquired fMRI and DT-MRI.
  
  
  METHODS
  Eleven consecutive patients with supratentorial gliomas were included in our study. All underwent surgery at our intra-operative MR imaging-guided therapy facility and have tumors in eloquent brain areas (e.g. precentral gyrus and cortico-spinal tract). Functional MRI and DT-MRI, together with MPRAGE and T2w structural MRI were acquired at 3 T prior to surgery. SPGR and T2w images were acquired with a 0.5 T magnet during each procedure. Quantitative assessment of the alignment accuracy was carried out and compared with current state-of-the-art systems based only on rigid registration.
  
  
  RESULTS
  Alignment between pre-operative and intra-operative datasets was successfully carried out during surgery for all patients. Overall, the mean residual displacement remaining after non-rigid registration was 1.82 mm. There is a statistically significant improvement in alignment accuracy utilizing our non-rigid registration in comparison to the currently used technology (p<0.001).
  
  
  CONCLUSIONS
  We were able to achieve intra-operative rigid and non-rigid registration of (1) pre-operative structural MRI with intra-operative T1w MRI; (2) pre-operative fMRI with intra-operative T1w MRI, and (3) pre-operative DT-MRI with intra-operative T1w MRI. The registration algorithms as implemented were sufficiently robust and rapid to meet the hard real-time constraints of intra-operative surgical decision making. The validation experiments demonstrate that we can accurately compensate for the deformation of the brain and thus can construct an augmented reality visualization to aid the surgeon.
authors.affiliation: Department of Radiology, Harvard Medical School, Brigham and Women's Hospital, 75 Francis St., Boston, MA 02115, USA. narchip@bwh.harvard.edu
authors.forename: Neculai
authors.initials: N
authors.lastname: Archip
authors.forename: Olivier
authors.initials: O
authors.lastname: Clatz
authors.forename: Stephen
authors.initials: S
authors.lastname: Whalen
authors.forename: Dan
authors.initials: D
authors.lastname: Kacher
authors.forename: Andriy
authors.initials: A
authors.lastname: Fedorov
authors.forename: Andriy
authors.initials: A
authors.lastname: Kot
authors.forename: Nikos
authors.initials: N
authors.lastname: Chrisochoides
authors.forename: Ferenc
authors.initials: F
authors.lastname: Jolesz
authors.forename: Alexandra
authors.initials: A
authors.lastname: Golby
authors.forename: Peter M
authors.initials: PM
authors.lastname: Black
authors.forename: Simon K
authors.initials: SK
authors.lastname: Warfield
mesh_terms: D000328:Adult; D005260:Female; D005910:Glioma / Q000601:surgery*; D006801:Humans; D007430:Intraoperative Care; D008279:Magnetic Resonance Imaging / Q000379:methods; D008297:Male; D008875:Middle Aged; D038361:Neuronavigation / Q000379:methods*; D011300:Preoperative Care; D011446:Prospective Studies; D015173:Supratentorial Neoplasms / Q000601:surgery*