title: A fast algorithm aligning multiple microbial genomic sequences.
abstract: To compare large genomic DNA sequences of related organisms and of different species, researchers need efficient methods to align many long sequences. We developed a new tool Super Multiple Genome Alignment (SMGA for short), specially for rapid multiple global alignment of genomic sequences. SMGA can align a data set consisting of 50M of 9 enterobacterial genomic sequences in 40 minutes. Our method is faster when compared with other existing multiple sequences alignment method.
authors.affiliation: School of Mathematic Science and LMPC, Nankai University, Tianjin 300071, China d021866@mail.nankai.edu.cn.
authors.forename: Guangyue
authors.initials: G
authors.lastname: Hu
authors.forename: Shiyi
authors.initials: S
authors.lastname: Shen