title: Characterization of three DNA transposons in the Dutch elm disease fungi and evidence of repeat-induced point (RIP) mutations.
abstract: Transposable elements (TEs) are fundamental components of eukaryotic genomes and can contribute in various ways to genome plasticity and evolution. We describe here the first three DNA transposons in the Dutch elm disease (DED) pathogens Ophiostoma ulmi and O. novo-ulmi, named OPHIO1, OPHIO2 and OPHIO3. We demonstrate that OPHIO transposons, which show high homology to Fot1/pogo TEs within the Tc1/mariner superfamily, have different distribution patterns and specificity in the DED fungi and that interspecific hybrids could act as genetic bridges for transmission of TEs between closely related fungal species. OPHIO3 was found to have undergone repeat-induced point mutations (RIP). We have also developed a complementary method to Margolin's ratios based on the computation of cumulative transition scores (CTS) in order to visualize rapidly RIP signatures on individual DNA strands of OPHIO transposons and TEs found in other ascomycete fungi.
authors.affiliation: Centre d'Etude de la Forêt (CEF), Université LAVAL, Que., Canada G1K7P4.
authors.forename: Guillaume F
authors.initials: GF
authors.lastname: Bouvet
authors.forename: Volker
authors.initials: V
authors.lastname: Jacobi
authors.forename: Louis
authors.initials: L
authors.lastname: Bernier
mesh_terms: D000595:Amino Acid Sequence; D001203:Ascomycota / Q000145:classification / Q000201:enzymology / Q000235:genetics*; D001483:Base Sequence; D002874:Chromosome Mapping; D015825:Chromosomes, Fungal / Q000235:genetics; D004251:DNA Transposable Elements / Q000235:genetics*; D005656:Fungal Proteins / Q000235:genetics; D008969:Molecular Sequence Data; D010802:Phylogeny; D017354:Point Mutation; D016415:Sequence Alignment; D017422:Sequence Analysis, DNA; D019895:Transposases / Q000235:genetics*; D034403:Ulmus / Q000382:microbiology*
chemical_list: D004251:DNA Transposable Elements; D005656:Fungal Proteins; D019895:Transposases