Relationships between 31P chemical shift tensors and conformation of nucleic acid backbone: a DFT study.
Density functional theory (DFT) has been applied to study the conformational dependence of 31P chemical shift tensors in B-DNA. The gg and gt conformations of backbone phosphate groups representing BI- and BII-DNA have been examined. Calculations have been carried out on static models of dimethyl phosphate (dmp) and dinucleoside-3',5'-monophosphate with bases replaced by hydrogen atoms in vacuo as well as in an explicit solvent. Trends in 31P chemical shift anisotropy (CSA) tensors with respect to the backbone torsion angles alpha, zeta, beta, and epsilon are presented. Although these trends do not change qualitatively upon solvation, quantitative changes result in the reduction of the chemical shift anisotropy. For alpha and zeta in the range from 270 degrees to 330 degrees and from 240 degrees to 300 degrees , respectively, the delta22 and delta33 principal components vary within as much as 30 ppm, showing a marked dependence on backbone conformation. The calculated 31P chemical shift tensor principal axes deviate from the axes of O-P-O bond angles by at most 5 degrees . For solvent models, our results are in a good agreement with experimental estimates of relative gg and gt isotropic chemical shifts. Solvation also brings the theoretical deltaiso of the gg conformation closer to the experimental gg data of barium diethyl phosphate.
Precechtelová
Jana
J
National Centre for Biomolecular Research, Faculty of Science, Masaryk University, KotlArskA 2, CZ-611 37 Brno, Czech Republic.
Munzarová
Markéta L
ML
Novák
Petr
P
Sklenár
Vladimír
V
D004247:DNA / Q000737:chemistry*; D015226:Dinucleoside Phosphates / Q000737:chemistry; D006859:Hydrogen / Q000737:chemistry*; D008958:Models, Molecular; D009690:Nucleic Acid Conformation; D009943:Organophosphorus Compounds / Q000737:chemistry; D010759:Phosphorus Isotopes / Q000737:chemistry; D012997:Solvents / Q000737:chemistry
D015226:Dinucleoside Phosphates; D009943:Organophosphorus Compounds; D010759:Phosphorus Isotopes; D012997:Solvents; D006859:Hydrogen; D004247:DNA; C007477:dimethyl phosphate