title: Automatic segmentation of the bone and extraction of the bone-cartilage interface from magnetic resonance images of the knee.
abstract: The accurate segmentation of the articular cartilages from magnetic resonance (MR) images of the knee is important for clinical studies and drug trials into conditions like osteoarthritis. Currently, segmentations are obtained using time-consuming manual or semi-automatic algorithms which have high inter- and intra-observer variabilities. This paper presents an important step towards obtaining automatic and accurate segmentations of the cartilages, namely an approach to automatically segment the bones and extract the bone-cartilage interfaces (BCI) in the knee. The segmentation is performed using three-dimensional active shape models, which are initialized using an affine registration to an atlas. The BCI are then extracted using image information and prior knowledge about the likelihood of each point belonging to the interface. The accuracy and robustness of the approach was experimentally validated using an MR database of fat suppressed spoiled gradient recall images. The (femur, tibia, patella) bone segmentation had a median Dice similarity coefficient of (0.96, 0.96, 0.89) and an average point-to-surface error of 0.16 mm on the BCI. The extracted BCI had a median surface overlap of 0.94 with the real interface, demonstrating its usefulness for subsequent cartilage segmentation or quantitative analysis.
authors.affiliation: BioMedIA Lab, Autonomous Systems Laboratory, CSIRO ICT Centre, Level 20, 300 Adelaide street, Brisbane, QLD 4001, Australia. jurgen.fripp@csiro.au
authors.forename: Jurgen
authors.initials: J
authors.lastname: Fripp
authors.forename: Stuart
authors.initials: S
authors.lastname: Crozier
authors.forename: Simon K
authors.initials: SK
authors.lastname: Warfield
authors.forename: Sébastien
authors.initials: S
authors.lastname: Ourselin
mesh_terms: D000465:Algorithms; D000818:Animals; D001331:Automation; D001842:Bone and Bones / Q000000981:diagnostic imaging / Q000473:pathology*; D002358:Cartilage, Articular / Q000000981:diagnostic imaging / Q000378:metabolism / Q000473:pathology*; D003238:Connective Tissue / Q000473:pathology; D006801:Humans; D007091:Image Processing, Computer-Assisted; D021621:Imaging, Three-Dimensional; D007717:Knee / Q000033:anatomy & histology* / Q000473:pathology*; D008279:Magnetic Resonance Imaging / Q000379:methods*; D008953:Models, Anatomic; D015233:Models, Statistical; D010003:Osteoarthritis / Q000473:pathology; D011859:Radiography