title: Characterization of polVR391: a Y-family polymerase encoded by rumA'B from the IncJ conjugative transposon, R391.
abstract: Although best characterized for their ability to traverse a variety of DNA lesions, Y-family DNA polymerases can also give rise to elevated spontaneous mutation rates if they are allowed to replicate undamaged DNA. One such enzyme that promotes high levels of spontaneous mutagenesis in Escherichia coli is polV(R391), a polV-like Y-family polymerase encoded by rumA'B from the IncJ conjugative transposon R391. When expressed in a DeltaumuDC lexA(Def) recA730 strain, polV(R391) promotes higher levels of spontaneous mutagenesis than the related MucA'B (polR1) or UmuD'C (polV) polymerases respectively. Analysis of the spectrum of polV(R391)-dependent mutations in rpoB revealed a unique genetic fingerprint that is typified by an increase in C:G-->A:T and A:T-->T:A transversions at certain mutagenic hot spots. Biochemical characterization of polV(R391) highlights the exceptional ability of the enzyme to misincorporate T opposite C and T in sequence contexts corresponding to mutagenic hot spots. Purified polV(R391) can also bypass a T-T pyrimidine dimer efficiently and displays greater accuracy opposite the 3'T of the dimer than opposite an undamaged T. Our study therefore provides evidence for the molecular basis for the enhanced spontaneous mutator activity of RumA'B, as well as explains its ability to promote efficient and accurate bypass of T-T pyrimidine dimers in vivo.
authors.affiliation: Laboratory of Genomic Integrity, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892-2725, USA.
authors.forename: Samantha
authors.initials: S
authors.lastname: Mead
authors.forename: Alexandra
authors.initials: A
authors.lastname: Vaisman
authors.forename: Majda
authors.initials: M
authors.lastname: Valjavec-Gratian
authors.forename: Kiyonobu
authors.initials: K
authors.lastname: Karata
authors.forename: Dominique
authors.initials: D
authors.lastname: Vandewiele
authors.forename: Roger
authors.initials: R
authors.lastname: Woodgate
mesh_terms: D004251:DNA Transposable Elements; D004259:DNA-Directed DNA Polymerase / Q000235:genetics* / Q000378:metabolism; D004926:Escherichia coli / Q000201:enzymology* / Q000235:genetics; D029968:Escherichia coli Proteins / Q000235:genetics* / Q000378:metabolism; D015964:Gene Expression Regulation, Bacterial; D016296:Mutagenesis; D013014:SOS Response, Genetics
chemical_list: D004251:DNA Transposable Elements; D029968:Escherichia coli Proteins; D004259:DNA-Directed DNA Polymerase; C520218:polV(R391) protein, E coli