title: Temporal reasoning with medical data--a review with emphasis on medical natural language processing.
abstract: Temporal information is crucial in electronic medical records and biomedical information systems. Processing temporal information in medical narrative data is a very challenging area. It lies at the intersection of temporal representation and reasoning (TRR) in artificial intelligence and medical natural language processing (MLP). Some fundamental concepts and important issues in relation to TRR have previously been discussed, mainly in the context of processing structured data in biomedical informatics; however, it is important that these concepts be re-examined in the context of processing narrative data using MLP. Theoretical and methodological TRR studies in biomedical informatics can be classified into three main categories: category 1 applies theories and models from temporal reasoning in AI; category 2 defines frameworks that meet needs from clinical applications; category 3 resolves issues such as temporal granularity and uncertainty. Currently, most MLP systems are not designed with a formal representation of time, and their ability to reason about temporal relations among medical events is limited. Previous work in processing time with clinical narrative data includes processing time in clinical reports, modeling textual temporal expressions in clinical databases, processing time in clinical guidelines, and building time standards for data exchange and integration. In addition to common problems in MLP, there are challenges specific to TRR in medical text, which occur at each level of linguistic structure and analysis. Despite advances in temporal reasoning in biomedical informatics, processing time in medical text deserves more attention. Besides the need for more research in temporal granularity, fuzzy time, temporal contradiction, intermittent events and uncertainty, broad areas for future research include enhancing functions of current MLP systems on processing temporal information, incorporating medical knowledge into temporal reasoning systems, resolving coreference, integrating narrative data with structured data and evaluating these systems.
authors.affiliation: Department of Biomedical Informatics, Columbia University, New York, NY 10032, USA. li.zhou@dbmi.columbia.edu <li.zhou@dbmi.columbia.edu>
authors.forename: Li
authors.initials: L
authors.lastname: Zhou
authors.forename: George
authors.initials: G
authors.lastname: Hripcsak
mesh_terms: D001185:Artificial Intelligence; D003628:Database Management Systems; D016208:Databases, Factual; D016247:Information Storage and Retrieval / Q000379:methods*; D008487:Medical History Taking / Q000379:methods*; D016347:Medical Records Systems, Computerized; D033262:Narration; D009323:Natural Language Processing; D010363:Pattern Recognition, Automated / Q000379:methods*; D009626:Terminology as Topic; D013997:Time Factors