title: Generation and annotation of lodgepole pine and oleoresin-induced expressed sequences from the blue-stain fungus Ophiostoma clavigerum, a Mountain Pine Beetle-associated pathogen.
abstract: Ophiostoma clavigerum is a destructive pathogen of lodgepole pine (Pinus contorta) forests in western North America. It is therefore a relevant system for a genomics analysis of fungi vectored by bark beetles. To begin characterizing molecular interactions between the pathogen and its conifer host, we created an expressed sequence tag (EST) collection for O. clavigerum. Lodgepole pine sawdust and oleoresin media were selected to stimulate gene expression that would be specific to this host interaction. Over 6500 cDNA clones, derived from four normalized cDNA libraries, were single-pass sequenced from the 3' end. After quality screening, we identified 5975 high-quality reads with an average PHRED 20 of greater than 750 bp. Clustering and assembly of this high-quality EST set resulted in the identification of 2620 unique putative transcripts. BLASTX analysis revealed that only 67% of these unique transcripts could be matched to known or predicted protein sequences in public databases. Functional classification of these sequences provided initial insights into the transcriptome of O. clavigerum. Of particular interest, our ESTs represent an extensive collection of cytochrome P450 s, ATP-binding-cassette-type transporters and genes involved in 1,8-dihydroxynaphthalene-melanin biosynthesis. These results are discussed in the context of detoxification of conifer oleoresins and fungal pathogenesis.
authors.affiliation: Department of Wood Science, University of British Columbia, Vancouver, British Columbia, Canada.
authors.forename: Scott
authors.initials: S
authors.lastname: DiGuistini
authors.forename: Steven G
authors.initials: SG
authors.lastname: Ralph
authors.forename: Young W
authors.initials: YW
authors.lastname: Lim
authors.forename: Robert
authors.initials: R
authors.lastname: Holt
authors.forename: Steven
authors.initials: S
authors.lastname: Jones
authors.forename: Jörg
authors.initials: J
authors.lastname: Bohlmann
authors.forename: Colette
authors.initials: C
authors.lastname: Breuil
mesh_terms: D000818:Animals; D001203:Ascomycota / Q000235:genetics*; D016000:Cluster Analysis; D001517:Coleoptera / Q000382:microbiology; D003470:Culture Media; D020224:Expressed Sequence Tags; D015723:Gene Library; D005800:Genes, Fungal; D005810:Multigene Family; D028223:Pinus / Q000382:microbiology*; D010936:Plant Extracts / Q000378:metabolism
chemical_list: D003470:Culture Media; D010936:Plant Extracts; C018620:oleoresins