ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors.
ClusterDraw is a program aimed to identification of binding sites and binding-site clusters. Major difference of the ClusterDraw from existing tools is its ability to scan a wide range of parameter values and weigh statistical significance of all possible clusters, smaller than a selected size. The program produces graphs along with decorated FASTA files. ClusterDraw web server is available at the following URL: http://flydev.berkeley.edu/cgi-bin/cld/submit.cgi
Papatsenko
Dmitri
D
Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA. dxp@berkeley.edu
D000465:Algorithms; D020816:Amino Acid Motifs; D001483:Base Sequence; D001665:Binding Sites; D016000:Cluster Analysis; D020407:Internet; D008969:Molecular Sequence Data; D011485:Protein Binding; D050436:Regulatory Elements, Transcriptional / Q000235:genetics*; D016415:Sequence Alignment / Q000379:methods*; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software; D014157:Transcription Factors / Q000737:chemistry* / Q000235:genetics*; D014584:User-Computer Interface
D014157:Transcription Factors