Evidence of chemical exchange in recombinant Major Urinary Protein and quenching thereof upon pheromone binding.
The internal dynamics of recombinant Major Urinary Protein (rMUP) have been investigated by monitoring transverse nitrogen-15 relaxation using multiple-echo Carr-Purcell-Meiboom-Gill (CPMG) experiments. While the ligand-free protein (APO-rMUP) features extensive evidence of motions on the milliseconds time scale, the complex with 2-methoxy-3-isobutylpyrazine (HOLO-rMUP) appears to be much less mobile on this time scale. At 308 K, exchange rates k (ex) = 500-2000 s(-1) were typically observed in APO-rMUP for residues located adjacent to a beta-turn comprising residues 83-87. These residues occlude an entry to the binding pocket and have been proposed to be a portal for ligand entry in other members of the lipocalin family, such as the retinol binding protein and the human fatty-acid binding protein. Exchange rates and populations are largely uncorrelated, suggesting local 'breathing' motions rather than a concerted global conformational change.
Perazzolo
Chiara
C
Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne, 1015, Lausanne, Switzerland. Chiara.Perazzolo@epfl.ch
Verde
Mariachiara
M
Homans
Steve W
SW
Bodenhausen
Geoffrey
G
D000818:Animals; D003198:Computer Simulation; D009587:Nitrogen Isotopes; D019906:Nuclear Magnetic Resonance, Biomolecular / Q000379:methods; D011485:Protein Binding; D017433:Protein Structure, Secondary; D011506:Proteins / Q000737:chemistry* / Q000235:genetics; D011719:Pyrazines / Q000737:chemistry; D011994:Recombinant Proteins / Q000737:chemistry*
D009587:Nitrogen Isotopes; D011506:Proteins; D011719:Pyrazines; D011994:Recombinant Proteins; C035737:major urinary proteins; C034376:2-isobutyl-3-methoxypyrazine