TROSY of side-chain amides in large proteins.
By using the mixed solvent of 50% H2O/50% D2O and employing deuterium decoupling, TROSY experiments exclusively detect NMR signals from semideuterated isotopomers of carboxamide groups with high sensitivities for proteins with molecular weights up to 80 kDa. This isotopomer-selective strategy extends TROSY experiments from exclusively detecting backbone to both backbone and side-chain amides, particularly in large proteins. Because of differences in both TROSY effect and dynamics between 15N-H(E){D(Z)} and 15N-H(Z){D(E)} isotopomers of the same carboxamide, the 15N transverse magnetization of the latter relaxes significantly faster than that of the former, which provides a direct and reliable stereospecific distinction between the two configurations. The TROSY effects on the 15N-H(E){D(Z)} isotopomers of side-chain amides are as significant as on backbone amides.
Liu
Aizhuo
A
Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA. liua@msu.edu
Yao
Lishan
L
Li
Yue
Y
Yan
Honggao
H
D000577:Amides / Q000737:chemistry*; D000596:Amino Acids / Q000737:chemistry*; D043525:Cytosine Deaminase / Q000737:chemistry*; D009587:Nitrogen Isotopes; D019906:Nuclear Magnetic Resonance, Biomolecular; D011522:Protons; D012441:Saccharomyces cerevisiae / Q000737:chemistry*
D000577:Amides; D000596:Amino Acids; D009587:Nitrogen Isotopes; D011522:Protons; D043525:Cytosine Deaminase