title: Multivariate analysis of 2-DE protein patterns--practical approaches.
abstract: Practical approaches to the use of multivariate data analysis of 2-DE protein patterns are demonstrated by three independent strategies for the image analysis and the multivariate analysis on the same set of 2-DE data. Four wheat varieties were selected on the basis of their baking quality. Two of the varieties were of strong baking quality and hard wheat kernel and two were of weak baking quality and soft kernel. Gliadins at different stages of grain development were analyzed by the application of multivariate data analysis on images of 2-DEs. Patterns related to the wheat varieties, harvest times and quality were detected on images of 2-DE protein patterns for all the three strategies. The use of the multivariate methods was evaluated in the alignment and matching procedures of 2-DE gels. All the three strategies were able to discriminate the samples according to quality, harvest time and variety, although different subsets of protein spots were selected. The explorative approach of using multivariate data analysis and variable selection in the analyses of 2-DEs seems to be promising as a fast, reliable and convenient way of screening and transforming many gel images into spot quantities.
authors.affiliation: BioCentrum-DTU, Technical University of Denmark, KGs. Lyngby, Denmark. sja@biocentrum.dtu.dk
authors.forename: Susanne
authors.initials: S
authors.lastname: Jacobsen
authors.forename: Harald
authors.initials: H
authors.lastname: Grove
authors.forename: Kristina Nedenskov
authors.initials: KN
authors.lastname: Jensen
authors.forename: Helle A
authors.initials: HA
authors.lastname: Sørensen
authors.forename: Flemming
authors.initials: F
authors.lastname: Jessen
authors.forename: Kristin
authors.initials: K
authors.lastname: Hollung
authors.forename: Anne Kjersti
authors.initials: AK
authors.lastname: Uhlen
authors.forename: Bo M
authors.initials: BM
authors.lastname: Jørgensen
authors.forename: Ellen Mosleth
authors.initials: EM
authors.lastname: Faergestad
authors.forename: Ib
authors.initials: I
authors.lastname: Søndergaard
mesh_terms: D015180:Electrophoresis, Gel, Two-Dimensional / Q000379:methods*; D005903:Gliadin / Q000302:isolation & purification; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D015999:Multivariate Analysis; D011506:Proteins / Q000302:isolation & purification*; D014908:Triticum / Q000737:chemistry
chemical_list: D011506:Proteins; D005903:Gliadin