title: A new DNA binding protein highly conserved in diverse crenarchaeal viruses.
abstract: Sulfolobus turreted icosahedral virus (STIV) infects Sulfolobus species found in the hot springs of Yellowstone National Park. Its 37 open reading frames (ORFs) generally lack sequence similarity to other genes. One exception, however, is ORF B116. While its function is unknown, orthologs are found in three additional crenarchaeal viral families. Due to the central importance of this protein family to crenarchaeal viruses, we have undertaken structural and biochemical studies of B116. The structure reveals a previously unobserved fold consisting of a five-stranded beta-sheet flanked on one side by three alpha helices. Two subunits come together to form a homodimer with a 10-stranded mixed beta-sheet, where the topology of the central strands resembles an unclosed beta-barrel. Highly conserved loops rise above the surface of the saddle-shaped protein and suggest an interaction with the major groove of DNA. The predicted B116-DNA interaction is confirmed by electrophoretic mobility shift assays.
authors.affiliation: Thermal Biology Institute, Montana State University, Bozeman, MT 59717, USA.
authors.forename: Eric T
authors.initials: ET
authors.lastname: Larson
authors.forename: Brian J
authors.initials: BJ
authors.lastname: Eilers
authors.forename: Dirk
authors.initials: D
authors.lastname: Reiter
authors.forename: Alice C
authors.initials: AC
authors.lastname: Ortmann
authors.forename: Mark J
authors.initials: MJ
authors.lastname: Young
authors.forename: C Martin
authors.initials: CM
authors.lastname: Lawrence
mesh_terms: D000595:Amino Acid Sequence; D023641:Archaeal Viruses / Q000737:chemistry* / Q000235:genetics; D004279:DNA, Viral / Q000378:metabolism; D004268:DNA-Binding Proteins / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D019281:Dimerization; D008969:Molecular Sequence Data; D016366:Open Reading Frames / Q000502:physiology; D017433:Protein Structure, Secondary; D016415:Sequence Alignment; D016944:Sulfolobus / Q000821:virology*; D014764:Viral Proteins / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D014871:Water Microbiology
chemical_list: D004279:DNA, Viral; D004268:DNA-Binding Proteins; D014764:Viral Proteins