title: Free pyrene probes in gel and fluid membranes: perspective through atomistic simulations.
abstract: We consider the properties of free pyrene probes inside gel- and fluidlike phospholipid membranes and unravel their influence on membrane properties. For this purpose, we employ atomic-scale molecular dynamics simulations at several temperatures for varying pyrene concentrations. Molecular dynamics simulations show that free pyrene molecules prefer to be located in the hydrophobic acyl chain region close to the glycerol group of lipid molecules. Their orientation is shown to depend on the phase of the membrane. In the fluid phase, pyrenes favor orientations where they are standing upright in parallel to the membrane normal, while, in the gel phase, the orientation is affected by the tilt of lipid acyl chains. Pyrenes are found to locally perturb membrane structure, while the nature of perturbations in the gel and fluid phases is completely different. In the gel phase, pyrenes break the local packing of lipids and decrease the ordering of lipid acyl chains around them, while, in the fluid phase, pyrenes increase the ordering of nearby acyl chains, thus having an opposite effect. Interestingly, this proposes a similarity to effects induced by cholesterol on structural membrane properties above and below the gel-fluid transition temperature. Further studies express a view that the orientational ordering of pyrene is not a particularly good measure of the acyl chain ordering of lipids. While pyrene ordering provides the correct qualitative behavior of acyl chain ordering in the fluid phase, its capability to predict the correct temperature dependence is limited.
authors: Department of Chemical Physics and Optics, Faculty of Mathematics and Physics, Charles University, Ke Karlovu 3, Prague 2, CZ-12116, Czech Republic.
authors: Jana
authors: J
authors: Curdová
authors: Pavla
authors: P
authors: Capková
authors: Jaromír
authors: J
authors: Plásek
authors: Jarmila
authors: J
authors: Repáková
authors: Ilpo
authors: I
authors: Vattulainen
mesh_terms: D003198:Computer Simulation; D005456:Fluorescent Dyes / Q000737:chemistry*; D005782:Gels / Q000737:chemistry; D008055:Lipids / Q000737:chemistry; D008567:Membranes, Artificial; D008956:Models, Chemical; D015394:Molecular Structure; D011721:Pyrenes / Q000737:chemistry*
chemical_list: D005456:Fluorescent Dyes; D005782:Gels; D008055:Lipids; D008567:Membranes, Artificial; D011721:Pyrenes