title: BLM Analyzer: a software tool for experiments on planar lipid bilayers.
abstract: Planar lipid bilayers represent a versatile platform for studying the functions of various membrane proteins as well as the development of biosensors. Despite the continuing technological progress in the fabrication of low-noise bilayer setups with mechanically and electrically stable planar bilayers, there is still a lack of software utilities for assistance during bilayer formation. We present here a multipurpose software tool, the bilayer lipid membrane (BLM) Analyzer which performs high-resolution measurements of bilayer capacitance and resistance using saw-tooth voltage stimulation. Based on the measured values of capacitance and resistance, the BLM Analyzer detects formation, stabilization, and breakage of lipid bilayer, automatically selects appropriate stimulus protocol, compensates for voltage offsets, and issues sound and voice alerts informing about the state of the measurement cycle. The principle of the BLM Analyzer is based on the integration of current responses within four equivalent time segments. It provides capacitance estimates with standard deviation of several femtofarads at temporal resolution of several tens of milliseconds. The functions of the BLM Analyzer were tested experimentally by monitoring formation and thinning of planar lipid bilayer.
authors: Institute of Molecular Physiology and Genetics, Slovak Academy of Sciences, Bratislava, Slovakia. pavel.novak@savba.sk
authors: Pavel
authors: P
authors: Novák
authors: Marta
authors: M
authors: Gaburjáková
authors: Ivan
authors: I
authors: Zahradník
mesh_terms: D000465:Algorithms; D000818:Animals; D015374:Biosensing Techniques; D019295:Computational Biology / Q000379:methods; D025802:Electric Capacitance; D004563:Electrochemistry / Q000379:methods; D004594:Electrophysiology; D006801:Humans; D008051:Lipid Bilayers / Q000737:chemistry*; D015233:Models, Statistical; D010743:Phospholipids / Q000737:chemistry; D015203:Reproducibility of Results; D012984:Software; D013997:Time Factors
chemical_list: D008051:Lipid Bilayers; D010743:Phospholipids