Ngila: global pairwise alignments with logarithmic and affine gap costs.
Ngila is an application that will find the best alignment of a pair of sequences using log-affine gap costs, which are the most biologically realistic gap costs.


BACKGROUND
Portable source code for Ngila can be downloaded from its development website, http://scit.us/projects/ngila/. It compiles on most operating systems.
Cartwright
Reed A
RA
Department of Genetics, University of Georgia, Athens, GA 30602-7223, USA. racartwr@ncsu.edu
D000465:Algorithms; D001483:Base Sequence; D004251:DNA Transposable Elements / Q000235:genetics*; D003627:Data Interpretation, Statistical; D017353:Gene Deletion; D008969:Molecular Sequence Data; D016415:Sequence Alignment / Q000379:methods*; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software
D004251:DNA Transposable Elements