Spatial modeling and classification of corneal shape.
One of the most promising applications of data mining is in biomedical data used in patient diagnosis. Any method of data analysis intended to support the clinical decision-making process should meet several criteria: it should capture clinically relevant features, be computationally feasible, and provide easily interpretable results. In an initial study, we examined the feasibility of using Zernike polynomials to represent biomedical instrument data in conjunction with a decision tree classifier to distinguish between the diseased and non-diseased eyes. Here, we provide a comprehensive follow-up to that work, examining a second representation, pseudo-Zernike polynomials, to determine whether they provide any increase in classification accuracy. We compare the fidelity of both methods using residual root-mean-square (rms) error and evaluate accuracy using several classifiers: neural networks, C4.5 decision trees, Voting Feature Intervals, and Naïve Bayes. We also examine the effect of several meta-learning strategies: boosting, bagging, and Random Forests (RFs). We present results comparing accuracy as it relates to dataset and transformation resolution over a larger, more challenging, multi-class dataset. They show that classification accuracy is similar for both data transformations, but differs by classifier. We find that the Zernike polynomials provide better feature representation than the pseudo-Zernikes and that the decision trees yield the best balance of classification accuracy and interpretability.
Marsolo
Keith
K
Department of Computer Science and Engineering, The Ohio State University, Columbus, OH 43210, USA. marsolo.2@osu.edu
Twa
Michael
M
Bullimore
Mark A
MA
Parthasarathy
Srinivasan
S
D000465:Algorithms; D001185:Artificial Intelligence; D003198:Computer Simulation; D003315:Cornea / Q000033:anatomy & histology* / Q000502:physiology*; D019781:Corneal Topography / Q000379:methods*; D003936:Diagnosis, Computer-Assisted / Q000379:methods*; D005240:Feasibility Studies; D006801:Humans; D008954:Models, Biological; D010363:Pattern Recognition, Automated / Q000379:methods*; D015203:Reproducibility of Results; D012680:Sensitivity and Specificity