title: Existence in vivo of the loop E motif in potato spindle tuber viroid RNA.
abstract: In vitro experiments have previously identified in potato spindle tuber viroid (PSTVd), the type member of the nuclear viroids, an element of local tertiary structure termed loop E. Here, by direct UV irradiation of PSTVd-infected tomato tissue and subsequent RNA analysis by denaturing polyacrylamide gel electrophoresis, northern blot hybridization and primer extension, we report that PSTVd (+) RNA also forms the loop E in vivo. These results provide strong support for the physiological relevance of this structural motif, which is involved in a wide range of functions including replication, host specificity and pathogenesis.
authors: Instituto de Biología Molecular y Celular de Plantas, CSIC-Universidad Politécnica de Valencia, Valencia, Spain.
authors: M
authors: M
authors: Eiras
authors: E W
authors: EW
authors: Kitajima
authors: R
authors: R
authors: Flores
authors: J A
authors: JA
authors: Daròs
mesh_terms: D001483:Base Sequence; D017931:DNA Primers / Q000235:genetics; D018551:Solanum lycopersicum / Q000821:virology; D009690:Nucleic Acid Conformation; D010935:Plant Diseases / Q000821:virology; D012367:RNA, Viral / Q000737:chemistry* / Q000235:genetics*; D011198:Solanum tuberosum / Q000821:virology; D014772:Viroids / Q000737:chemistry / Q000235:genetics* / Q000472:pathogenicity
chemical_list: D017931:DNA Primers; D012367:RNA, Viral