The candidate phylum 'Termite Group 1' of bacteria: phylogenetic diversity, distribution, and endosymbiont members of various gut flagellated protists.
The candidate phylum 'Termite Group 1' (TG1) of bacteria, which is abundant in termite guts but has no culturable representative, was investigated with respect to the in situ localization, distribution, and diversity. Based on the 16S rRNA gene sequence analyses and FISH in termite guts, a number of lineages of TG1 members were identified as endosymbionts of a variety of gut flagellated protists from the orders Trichonymphida, Cristamonadida, and Oxymonadida that are mostly unique to termites. However, the survey in various environments using specific PCR primers revealed that TG1 members were also present in termites, a cockroach, and the bovine rumen that typically lack these protist orders. Most of the TG1 members from gut flagellates, termites, cockroaches, and the rumen formed a monophyletic subcluster that showed a shallow branching pattern in the phylogenetic tree, suggesting their recent diversification. Although endosymbionts of the same protist genera tended to be closely related, the endosymbiont lineages were often independent of the higher level classifications of their host protist and were dispersed in the phylogenetic tree. It appears that their cospeciation is not the sole rule for the diversification of TG1 members of endosymbionts.
Ohkuma
Moriya
M
Environmental Molecular Biology Laboratory, RIKEN, Saitama, Japan. mohkuma@riken.jp
Sato
Tomoyuki
T
Noda
Satoko
S
Ui
Sadaharu
S
Kudo
Toshiaki
T
Hongoh
Yuichi
Y
D000818:Animals; D001419:Bacteria / Q000145:classification* / Q000235:genetics; D018407:Bacterial Physiological Phenomena; D044822:Biodiversity; D002417:Cattle; D003058:Cockroaches / Q000382:microbiology / Q000469:parasitology; D004269:DNA, Bacterial; D056890:Eukaryota / Q000382:microbiology* / Q000502:physiology; D041981:Gastrointestinal Tract / Q000382:microbiology / Q000469:parasitology; D020459:Genes, rRNA; D020049:Isoptera / Q000382:microbiology* / Q000469:parasitology; D008969:Molecular Sequence Data; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012417:Rumen / Q000382:microbiology / Q000469:parasitology; D013559:Symbiosis
D004269:DNA, Bacterial; D012336:RNA, Ribosomal, 16S