title: Unique dimeric structure of BNip3 transmembrane domain suggests membrane permeabilization as a cell death trigger.
abstract: BNip3 is a prominent representative of apoptotic Bcl-2 proteins with rather unique properties initiating an atypical programmed cell death pathway resembling both necrosis and apoptosis. Many Bcl-2 family proteins modulate the permeability state of the outer mitochondrial membrane by forming homo- and hetero-oligomers. The structure and dynamics of the homodimeric transmembrane domain of BNip3 were investigated with the aid of solution NMR in lipid bicelles and molecular dynamics energy relaxation in an explicit lipid bilayer. The right-handed parallel helix-helix structure of the domain with a hydrogen bond-rich His-Ser node in the middle of the membrane, accessibility of the node for water, and continuous hydrophilic track across the membrane suggest that the domain can provide an ion-conducting pathway through the membrane. Incorporation of the BNip3 transmembrane domain into an artificial lipid bilayer resulted in pH-dependent conductivity increase. A possible biological implication of the findings in relation to triggering necrosis-like cell death by BNip3 is discussed.
authors.affiliation: Laboratory of Structural Biology, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, ul. Miklukho-Maklaya, 16/10, Moscow 117997, Russia. bon@nmr.ru
authors.forename: Eduard V
authors.initials: EV
authors.lastname: Bocharov
authors.forename: Yulia E
authors.initials: YE
authors.lastname: Pustovalova
authors.forename: Konstantin V
authors.initials: KV
authors.lastname: Pavlov
authors.forename: Pavel E
authors.initials: PE
authors.lastname: Volynsky
authors.forename: Marina V
authors.initials: MV
authors.lastname: Goncharuk
authors.forename: Yaroslav S
authors.initials: YS
authors.lastname: Ermolyuk
authors.forename: Dmitry V
authors.initials: DV
authors.lastname: Karpunin
authors.forename: Alexey A
authors.initials: AA
authors.lastname: Schulga
authors.forename: Michail P
authors.initials: MP
authors.lastname: Kirpichnikov
authors.forename: Roman G
authors.initials: RG
authors.lastname: Efremov
authors.forename: Innokenty V
authors.initials: IV
authors.lastname: Maslennikov
authors.forename: Alexander S
authors.initials: AS
authors.lastname: Arseniev
mesh_terms: D017209:Apoptosis; D002463:Cell Membrane Permeability; D006801:Humans; D006860:Hydrogen Bonding; D006863:Hydrogen-Ion Concentration; D007473:Ion Channels; D017136:Ion Transport; D008051:Lipid Bilayers; D008565:Membrane Proteins / Q000737:chemistry*; D008823:Micelles; D051336:Mitochondrial Membranes; D009336:Necrosis; D019906:Nuclear Magnetic Resonance, Biomolecular; D017433:Protein Structure, Secondary; D017434:Protein Structure, Tertiary; D011518:Proto-Oncogene Proteins / Q000737:chemistry*; D013329:Structure-Activity Relationship
chemical_list: C090121:BNIP3 protein, human; D007473:Ion Channels; D008051:Lipid Bilayers; D008565:Membrane Proteins; D008823:Micelles; D011518:Proto-Oncogene Proteins