title: Methylation profiles of CpG island loci in major types of human cancers.
abstract: Several reports have described aberrant methylation in various types of human cancers. However, the interpretation of methylation frequency in various human cancers has some limitations because of the different materials and methods used for methylation analysis. To gain an insight into the role of DNA hypermethylation in human cancers and allow direct comparison of tissue specific methylation, we generated methylation profiles in 328 human cancers, including 24 breast, 48 colon, 61 stomach, 48 liver, 37 larynx, 24 lung, 40 prostate, and 46 uterine cervical cancer samples by analyzing CpG island hypermethylation of 13 genes using methylation-specific PCR. The mean numbers of methylated genes were 6.5, 4.4, 3.6, 3.4, 3.1, 3.1, 3.1, and 2.1 in gastric, liver, prostate, larynx, colon, lung, uterine cervix, and in breast cancer samples, respectively. The number of genes that were methylated at a frequency of more than 40% in each tumor type ranged from nine (stomach) to one (breast). Generally genes frequently methylated in a specific cancer type differed from those methylated in other cancer types. The findings indicate that aberrant CpG island hypermethylation is a frequent finding in human cancers of various tissue types, and each tissue type has its own distinct methylation pattern.
authors: Department of Pathology, Seoul National University College of Medicine, Seoul, Korea.
authors: Seog-Yun
authors: SY
authors: Park
authors: Baek-Hee
authors: BH
authors: Kim
authors: Jeong Ho
authors: JH
authors: Kim
authors: Nam-Yun
authors: NY
authors: Cho
authors: Minhee
authors: M
authors: Choi
authors: Eun Joo
authors: EJ
authors: Yu
authors: Sun
authors: S
authors: Lee
authors: Gyeong Hoon
authors: GH
authors: Kang
mesh_terms: D002874:Chromosome Mapping / Q000379:methods*; D018899:CpG Islands / Q000235:genetics*; D019175:DNA Methylation; D004273:DNA, Neoplasm / Q000235:genetics*; D005787:Gene Frequency / Q000235:genetics; D020022:Genetic Predisposition to Disease / Q000235:genetics; D006801:Humans; D009369:Neoplasms / Q000235:genetics*; D016133:Polymerase Chain Reaction; D040641:Quantitative Trait Loci / Q000235:genetics*
chemical_list: D004273:DNA, Neoplasm