Association between IRF6 and nonsyndromic cleft lip with or without cleft palate in four populations.
OBJECTIVE
The interferon regulatory factor 6 (IRF6), the gene that causes van der Woude syndrome has been shown to be associated with nonsyndromic cleft lip with or without palate in several populations. This study aimed to confirm the contribution of IRF6 to cleft lip with or without palate risk in additional Asian populations.


METHODS
A set of 13 single nucleotide polymorphisms was tested for association with cleft lip with or without palate in 77 European American, 146 Taiwanese, 34 Singaporean, and 40 Korean case-parent trios using both the transmission disequilibrium test and conditional logistic regression models.


RESULTS
Evidence of linkage and association was observed among all four populations; and two specific haplotypes [GC composed of rs2235373-rs2235371 (p.V274I) and AAG of rs599021-rs2235373-rs595918] showed the most significant over- and undertransmission among Taiwanese cases (P=9x10(-6) and P=5x10(-6), respectively). The AGC/CGC diplotype composed of rs599021-rs2235373-rs2013162 showed almost a 7-fold increase in risk among the Taiwanese sample (P<10(-3)). These results confirmed the contribution of this gene to susceptibility of oral clefts across different populations; however, the specific single nucleotide polymorphisms showing statistical significance differed among ethnic groups.


CONCLUSIONS
The high-risk genotypes and diplotypes identified here may provide a better understanding of the etiological role of this gene in oral clefts and potential options for genetic counseling.
Park
Ji Wan
JW
Department of Epidemiology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland 21205, USA, and Department of Medical Research and Craniofacial Center, Chang Gung Memorial Hospital, Taoyuan, Taiwan.
McIntosh
Iain
I
Hetmanski
Jacqueline B
JB
Jabs
Ethylin Wang
EW
Vander Kolk
Craig A
CA
Wu-Chou
Yah-Huei
YH
Chen
Philip K
PK
Chong
Samuel S
SS
Yeow
Vincent
V
Jee
Sun Ha
SH
Park
Beyoung Yun
BY
Fallin
M Daniele
MD
Ingersoll
Roxann
R
Scott
Alan F
AF
Beaty
Terri H
TH
D044466:Asian People / Q000235:genetics; D002971:Cleft Lip / Q000208:ethnology / Q000209:etiology / Q000235:genetics*; D002972:Cleft Palate / Q000208:ethnology / Q000209:etiology / Q000235:genetics*; D020022:Genetic Predisposition to Disease; D005838:Genotype; D006239:Haplotypes; D006801:Humans; D007231:Infant, Newborn; D050835:Interferon Regulatory Factors / Q000235:genetics*; D015810:Linkage Disequilibrium; D020641:Polymorphism, Single Nucleotide; D044382:Population Groups / Q000208:ethnology / Q000235:genetics
C109803:IRF6 protein, human; D050835:Interferon Regulatory Factors