title: Prediction of specific pathogens in patients with sepsis: evaluation of TREAT, a computerized decision support system.
abstract: BACKGROUND
  Prediction of bacterial infections and their pathogens allows for early, directed investigation and treatment. We assessed the ability of TREAT, a computerized decision support system, to predict specific pathogens.
  
  
  METHODS
  TREAT uses data available within the first few hours of infection presentation in a causal probabilistic network to predict sites of infection and specific pathogens. We included 3529 patients (920 with microbiologically documented infections) participating in the observational and interventional trials of the TREAT system in Israel, Germany and Italy. Discriminatory performance of TREAT to predict individual pathogens was expressed by the AUC with 95% confidence intervals. Calibration was assessed using the Hosmer-Lemeshow goodness-of-fit statistic.
  
  
  RESULTS
  The AUCs for Gram-negative bacteria, including Pseudomonas aeruginosa, Acinetobacter baumannii, Klebsiella spp. and Escherichia coli, ranged between 0.70 and 0.80 (all significant). Adequate calibration was demonstrated for any Gram-negative infection and individual bacteria, except for E. coli. Discrimination and calibration were acceptable for Enterococcus spp. (AUC 0.71, 0.65-0.78), but not for Staphylococcus aureus (AUC 0.63, 0.55-0.71). The few infections caused by Candida spp. and Clostridium difficile were well predicted (AUCs 0.74, 0.54-0.95; and 0.94, 0.88-1.00, respectively). The coverage with TREAT's recommendation exceeded that observed with physicians' treatment for all pathogens, except Candida spp.
  
  
  CONCLUSIONS
  TREAT predicted individual pathogens causing infection well. Prediction of S. aureus was inferior to that observed with other pathogens. TREAT can be used to triage patients by the risk for specific pathogens. The system's predictions enable it to prescribe appropriate antibiotic treatment prior to pathogen identification.
authors: Department of Medicine E, Rabin Medical Center, Beilinson Campus, Petah-Tiqva, Israel.
authors: Mical
authors: M
authors: Paul
authors: Anders D
authors: AD
authors: Nielsen
authors: Elad
authors: E
authors: Goldberg
authors: Steen
authors: S
authors: Andreassen
authors: Evelina
authors: E
authors: Tacconelli
authors: Nadja
authors: N
authors: Almanasreh
authors: Uwe
authors: U
authors: Frank
authors: Roberto
authors: R
authors: Cauda
authors: Leonard
authors: L
authors: Leibovici
mesh_terms: D000900:Anti-Bacterial Agents / Q000627:therapeutic use*; D001424:Bacterial Infections / Q000188:drug therapy / Q000382:microbiology; D002138:Calibration; D015331:Cohort Studies; D003658:Decision Making, Computer-Assisted; D006090:Gram-Negative Bacteria / Q000187:drug effects; D006801:Humans; D015233:Models, Statistical; D009181:Mycoses / Q000188:drug therapy / Q000382:microbiology; D016571:Neural Networks, Computer; D011237:Predictive Value of Tests; D012372:ROC Curve; D018805:Sepsis / Q000188:drug therapy* / Q000382:microbiology*; D012984:Software
chemical_list: D000900:Anti-Bacterial Agents