title: Automated generation of curved planar reformations from MR images of the spine.
abstract: A novel method for automated curved planar reformation (CPR) of magnetic resonance (MR) images of the spine is presented. The CPR images, generated by a transformation from image-based to spine-based coordinate system, follow the structural shape of the spine and allow the whole course of the curved anatomy to be viewed in individual cross-sections. The three-dimensional (3D) spine curve and the axial vertebral rotation, which determine the transformation, are described by polynomial functions. The 3D spine curve passes through the centres of vertebral bodies, while the axial vertebral rotation determines the rotation of vertebrae around the axis of the spinal column. The optimal polynomial parameters are obtained by a robust refinement of the initial estimates of the centres of vertebral bodies and axial vertebral rotation. The optimization framework is based on the automatic image analysis of MR spine images that exploits some basic anatomical properties of the spine. The method was evaluated on 21 MR images from 12 patients and the results provided a good description of spine anatomy, with mean errors of 2.5 mm and 1.7 degrees for the position of the 3D spine curve and axial rotation of vertebrae, respectively. The generated CPR images are independent of the position of the patient in the scanner while comprising both anatomical and geometrical properties of the spine.
authors.affiliation: Faculty of Electrical Engineering, University of Ljubljana, Trzaska 25, SI-1000 Ljubljana, Slovenia. tomaz.vrtovec@fe.uni-lj.si
authors.forename: Tomaz
authors.initials: T
authors.lastname: Vrtovec
authors.forename: Sébastien
authors.initials: S
authors.lastname: Ourselin
authors.forename: Lavier
authors.initials: L
authors.lastname: Gomes
authors.forename: Bostjan
authors.initials: B
authors.lastname: Likar
authors.forename: Franjo
authors.initials: F
authors.lastname: Pernus
mesh_terms: D006801:Humans; D007090:Image Interpretation, Computer-Assisted; D021621:Imaging, Three-Dimensional; D008279:Magnetic Resonance Imaging / Q000379:methods*; D013131:Spine / Q000033:anatomy & histology*