SciRoKo: a new tool for whole genome microsatellite search and investigation.
SciRoKo is a user-friendly software tool for the identification of microsatellites in genomic sequences. The combination of an extremely fast search algorithm with a built-in summary statistic tool makes SciRoKo an excellent tool for full genome analysis. Compared to other already existing tools, SciRoKo also allows the analysis of compound microsatellites.


BACKGROUND
free for use: www.kofler.or.at/Bioinformatics.


BACKGROUND
Supplementary data are available at Bioinformatics online.
Kofler
Robert
R
University of Natural Resources and Applied Life Sciences, Department for Agrobiotechnology IFA-Tulln, Institute of Biotechnology in Plant Production, 3430 Tulln, Austria. robert.kofler@boku.ac.at
Schlötterer
Christian
C
Lelley
Tamas
T
D000465:Algorithms; D001185:Artificial Intelligence; D001483:Base Sequence; D002874:Chromosome Mapping / Q000379:methods*; D018895:Microsatellite Repeats / Q000235:genetics*; D008969:Molecular Sequence Data; D010363:Pattern Recognition, Automated / Q000379:methods; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software