title: Electronic excitations of glycine, alanine, and cysteine conformers from first-principles calculations.
abstract: The electronic and optical properties are studied for three conformers of amino acid molecules using gradient-corrected (spin-) density functional theory within a projector-augmented wave scheme and the supercell method. We investigate single-particle excitations such as ionization energies and electron affinities as well as pair excitations. By comparing eigenvalues resulting from several local and nonlocal energy functionals, the influence of treatment of exchange and correlation is demonstrated. The excitations are described within the Delta-self-consistent field method with an occupation number constraint to obtain excitation energies and Stokes shifts. The results are used to also discuss the optical absorption properties. In contrast to the lowest single- and two-particle excitation energies, remarkable changes are found in absorption spectra in dependence on the conformation of the molecule geometry.
authors.affiliation: Institut für Festkörpertheorie und-optik, Friedrich-Schiller-Universität Jena, Max-Wien-Platz 1, 07743 Jena, Germany.
authors.forename: R
authors.initials: R
authors.lastname: Maul
authors.forename: M
authors.initials: M
authors.lastname: Preuss
authors.forename: F
authors.initials: F
authors.lastname: Ortmann
authors.forename: K
authors.initials: K
authors.lastname: Hannewald
authors.forename: F
authors.initials: F
authors.lastname: Bechstedt
mesh_terms: D000409:Alanine / Q000737:chemistry*; D003545:Cysteine / Q000737:chemistry*; D005998:Glycine / Q000737:chemistry*; D008958:Models, Molecular; D008968:Molecular Conformation
chemical_list: D003545:Cysteine; D000409:Alanine; D005998:Glycine