title: The three-dimensional structure of codakine and related marine C-type lectins.
abstract: Codakine is a new Ca(2+)-dependent mannose-binding C-type lectin (MBL) isolated from the gill tissue of the tropical clam, Codakia orbicularis. Bioinformatic analyses with the BLAST program have revealed similarities with marine lectins involved in immunity whose three-dimensional (3D) structures were unknown up until recently. In this article, we present bioinformatic analyses of marine lectins that are homologous to codakine, in particular lectins from the sea worm Laxus oneistus, named mermaid. These lectins are involved in the symbiotic association with sulphur-oxidizing bacteria which are closely related to the C. orbicularis gill symbiont. Using homology modelling, folding that is characteristic of C-type lectins was observed in all the marine Ca(2+)-dependent lectins studied, with conservation of random coiled structures of the carbohydrate recognition domain (CRD) and Ca(2+)-binding sites. Like codakine, the marine lectins analysed contain a signal peptide commonly found in secreted and transmembrane proteins. The majority of the predictive 3D models established from the lectins exhibit a common feature, namely the involvement in invertebrate and vertebrate immunity (dendritic cell receptor, macrophage receptor, etc.). These bioinformatic analyses and the literature data support the hypothesis that codakine, like the L. oneistus mermaids, is probably involved in the cellular mediation of symbiosis and defence against pathogenic microorganisms.
authors.affiliation: Département de Biologie, UFR Sciences Exactes et Naturelles, Université des Antilles et de la Guyane, 97 159, Pointe-à-Pitre, Guadeloupe.
authors.forename: Jean-Philippe
authors.initials: JP
authors.lastname: Gourdine
authors.forename: Anatoly
authors.initials: A
authors.lastname: Markiv
authors.forename: Juliette
authors.initials: J
authors.lastname: Smith-Ravin
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D049872:Bivalvia / Q000737:chemistry; D021621:Imaging, Three-Dimensional / Q000662:veterinary; D037181:Lectins, C-Type / Q000737:chemistry*; D008958:Models, Molecular; D008969:Molecular Sequence Data; D009348:Nematoda / Q000737:chemistry; D010802:Phylogeny; D017434:Protein Structure, Tertiary; D016415:Sequence Alignment / Q000662:veterinary; D020539:Sequence Analysis, Protein / Q000662:veterinary
chemical_list: D037181:Lectins, C-Type