A genomewide admixture mapping panel for Hispanic/Latino populations.
Admixture mapping (AM) is a promising method for the identification of genetic risk factors for complex traits and diseases showing prevalence differences among populations. Efficient application of this method requires the use of a genomewide panel of ancestry-informative markers (AIMs) to infer the population of origin of chromosomal regions in admixed individuals. Genomewide AM panels with markers showing high frequency differences between West African and European populations are already available for disease-gene discovery in African Americans. However, no such a map is yet available for Hispanic/Latino populations, which are the result of two-way admixture between Native American and European populations or of three-way admixture of Native American, European, and West African populations. Here, we report a genomewide AM panel with 2,120 AIMs showing high frequency differences between Native American and European populations. The average intermarker genetic distance is ~1.7 cM. The panel was identified by genotyping, with the Affymetrix GeneChip Human Mapping 500K array, a population sample with European ancestry, a Mesoamerican sample comprising Maya and Nahua from Mexico, and a South American sample comprising Aymara/Quechua from Bolivia and Quechua from Peru. The main criteria for marker selection were both high information content for Native American/European ancestry (measured as the standardized variance of the allele frequencies, also known as "f value") and small frequency differences between the Mesoamerican and South American samples. This genomewide AM panel will make it possible to apply AM approaches in many admixed populations throughout the Americas.
Mao
Xianyun
X
Department of Anthropology, The Pennsylvania State University, University Park, PA 16801, USA.
Bigham
Abigail W
AW
Mei
Rui
R
Gutierrez
Gerardo
G
Weiss
Ken M
KM
Brutsaert
Tom D
TD
Leon-Velarde
Fabiola
F
Moore
Lorna G
LG
Vargas
Enrique
E
McKeigue
Paul M
PM
Shriver
Mark D
MD
Parra
Esteban J
EJ
D000483:Alleles; D044383:Black People / Q000235:genetics; D002874:Chromosome Mapping; D002877:Chromosomes, Human; D005787:Gene Frequency; D008040:Genetic Linkage; D005819:Genetic Markers; D005820:Genetic Testing; D005828:Genetics, Population; D015894:Genome, Human; D005838:Genotype; D006630:Hispanic or Latino / Q000235:genetics*; D006801:Humans; D007197:Indians, Central American / Q000235:genetics; D007198:Indians, North American / Q000235:genetics; D007199:Indians, South American / Q000235:genetics; D008957:Models, Genetic; D020411:Oligonucleotide Array Sequence Analysis; D020641:Polymorphism, Single Nucleotide; D044465:White People / Q000235:genetics; D001741:Black or African American
D005819:Genetic Markers