Tilescope: online analysis pipeline for high-density tiling microarray data.
We developed Tilescope, a fully integrated data processing pipeline for analyzing high-density tiling-array data http://tilescope.gersteinlab.org. In a completely automated fashion, Tilescope will normalize signals between channels and across arrays, combine replicate experiments, score each array element, and identify genomic features. The program is designed with a modular, three-tiered architecture, facilitating parallelism, and a graphic user-friendly interface, presenting results in an organized web page, downloadable for further analysis.
Zhang
Zhengdong D
ZD
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA. zhengdong.zhang@yale.edu
Rozowsky
Joel
J
Lam
Hugo Y K
HY
Du
Jiang
J
Snyder
Michael
M
Gerstein
Mark
M
D003196:Computer Graphics; D003627:Data Interpretation, Statistical; D020869:Gene Expression Profiling / Q000592:standards / Q000706:statistics & numerical data; D015233:Models, Statistical; D020411:Oligonucleotide Array Sequence Analysis / Q000592:standards* / Q000706:statistics & numerical data; D012015:Reference Standards; D012984:Software