title: A genome-scale map of expression for a mouse brain section obtained using voxelation.
abstract: Gene expression signatures in the mammalian brain hold the key to understanding neural development and neurological diseases. We have reconstructed two-dimensional images of gene expression for 20,000 genes in a coronal slice of the mouse brain at the level of the striatum by using microarrays in combination with voxelation at a resolution of 1 mm3. Good reliability of the microarray results were confirmed using multiple replicates, subsequent quantitative RT-PCR voxelation, mass spectrometry voxelation, and publicly available in situ hybridization data. Known and novel genes were identified with expression patterns localized to defined substructures within the brain. In addition, genes with unexpected patterns were identified, and cluster analysis identified a set of genes with a gradient of dorsal/ventral expression not restricted to known anatomical boundaries. The genome-scale maps of gene expression obtained using voxelation will be a valuable tool for the neuroscience community.
authors.affiliation: Department of Molecular and Medical Pharmacology, David Geffen School of Medicine at UCLA, Los Angeles, California, USA.
authors.forename: Mark H
authors.initials: MH
authors.lastname: Chin
authors.forename: Alex B
authors.initials: AB
authors.lastname: Geng
authors.forename: Arshad H
authors.initials: AH
authors.lastname: Khan
authors.forename: Wei-Jun
authors.initials: WJ
authors.lastname: Qian
authors.forename: Vladislav A
authors.initials: VA
authors.lastname: Petyuk
authors.forename: Jyl
authors.initials: J
authors.lastname: Boline
authors.forename: Shawn
authors.initials: S
authors.lastname: Levy
authors.forename: Arthur W
authors.initials: AW
authors.lastname: Toga
authors.forename: Richard D
authors.initials: RD
authors.lastname: Smith
authors.forename: Richard M
authors.initials: RM
authors.lastname: Leahy
authors.forename: Desmond J
authors.initials: DJ
authors.lastname: Smith
mesh_terms: D000818:Animals; D001921:Brain / Q000378:metabolism*; D001931:Brain Mapping / Q000379:methods*; D020869:Gene Expression Profiling / Q000379:methods*; D005786:Gene Expression Regulation; D016678:Genome; D007091:Image Processing, Computer-Assisted; D051379:Mice; D008810:Mice, Inbred C57BL; D008867:Microtomy / Q000379:methods*; D008954:Models, Biological; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D020858:Tissue and Organ Harvesting / Q000379:methods*