title: Completion of the mapping of transcription start sites for the five-gene block subgenomic RNAs of Beet yellows Closterovirus and identification of putative subgenomic promoters.
abstract: In the positive-sense RNA genome of Beet yellows Closterovirus (BYV), the 3'-terminal open reading frames (ORFs) 2-8 are expressed as a nested set of subgenomic (sg) RNAs. ORFs 2-6, coding for the structural and movement proteins, form a 'five-gene block' conserved in closteroviruses. We mapped the 5'-end of the ORF 4 sgRNA, which encodes the p64 protein, at adenosine-11169 in the BYV genome. This completes the mapping of the transcription start sites for the five-gene block sgRNAs of BYV. Computer-assisted analysis of the sequences upstream of BYV ORFs 2, 3, 4, 5, and 6 revealed two conserved motifs, which might constitute the subgenomic promoter elements. These motifs are conserved in the equivalent positions upstream of three orthologous genes of Citrus tristeza Closterovirus and two orthologous genes of Beet yellow stunt Closterovirus.
authors.affiliation: Belozersky Institute, Moscow State University, 119992 Moscow, Russia.
authors.forename: Maria V
authors.initials: MV
authors.lastname: Vitushkina
authors.forename: Igor B
authors.initials: IB
authors.lastname: Rogozin
authors.forename: Wilhelm
authors.initials: W
authors.lastname: Jelkmann
authors.forename: Eugene V
authors.initials: EV
authors.lastname: Koonin
authors.forename: Alexey A
authors.initials: AA
authors.lastname: Agranovsky
mesh_terms: D001483:Base Sequence; D027461:Beta vulgaris / Q000821:virology*; D017790:Closterovirus / Q000235:genetics / Q000378:metabolism*; D015967:Gene Expression Regulation, Viral; D016679:Genome, Viral; D008969:Molecular Sequence Data; D016366:Open Reading Frames / Q000235:genetics; D011401:Promoter Regions, Genetic / Q000235:genetics*; D012333:RNA, Messenger / Q000235:genetics / Q000378:metabolism; D012367:RNA, Viral / Q000235:genetics* / Q000378:metabolism; D024363:Transcription Initiation Site; D014764:Viral Proteins / Q000235:genetics*
chemical_list: D012333:RNA, Messenger; D012367:RNA, Viral; D014764:Viral Proteins