Refinement of protein structure against non-redundant carbonyl 13C NMR relaxation.
Carbonyl (13)C' relaxation is dominated by the contribution from the (13)C' chemical shift anisotropy (CSA). The relaxation rates provide useful and non-redundant structural information in addition to dynamic parameters. It is straightforward to acquire, and offers complimentary structural information to the (15)N relaxation data. Furthermore, the non-axial nature of the (13)C' CSA tensor results in a T(1)/T(2) value that depends on an additional angular variable even when the diffusion tensor of the protein molecule is axially symmetric. This dependence on an extra degree of freedom provides new geometrical information that is not available from the NH dipolar relaxation. A protocol that incorporates such structural restraints into NMR structure calculation was developed within the program Xplor-NIH. Its application was illustrated with the yeast Fis1 NMR structure. Refinement against the (13)C' T(1)/T(2) improved the overall quality of the structure, as evaluated by cross-validation against the residual dipolar coupling as well as the (15)N relaxation data. In addition, possible variations of the CSA tensor were addressed.
Tjandra
Nico
N
Laboratory of Molecular Biophysics, National Heart, Lung, and Blood Institute, National Institutes of Health, Building 50, Room 3503, Bethesda, MD 20892, USA. nico@helix.nih.gov
Suzuki
Motoshi
M
Chang
Shou-Lin
SL
D016880:Anisotropy; D002244:Carbon / Q000032:analysis / Q000737:chemistry*; D002247:Carbon Isotopes; D024101:Mitochondrial Proteins / Q000737:chemistry*; D008958:Models, Molecular; D009587:Nitrogen Isotopes; D019906:Nuclear Magnetic Resonance, Biomolecular / Q000379:methods*; D017433:Protein Structure, Secondary; D012441:Saccharomyces cerevisiae / Q000737:chemistry*; D029701:Saccharomyces cerevisiae Proteins / Q000737:chemistry*
D002247:Carbon Isotopes; C464859:FIS1 protein, S cerevisiae; D024101:Mitochondrial Proteins; D009587:Nitrogen Isotopes; D029701:Saccharomyces cerevisiae Proteins; D002244:Carbon