Probing electrostatic interactions along the reaction pathway of a glycoside hydrolase: histidine characterization by NMR spectroscopy.
We have characterized by NMR spectroscopy the three active site (His80, His85, and His205) and two non-active site (His107 and His114) histidines in the 34 kDa catalytic domain of Cellulomonas fimi xylanase Cex in its apo, noncovalently aza-sugar-inhibited, and trapped glycosyl-enzyme intermediate states. Due to protection from hydrogen exchange, the level of which increased upon inhibition, the labile 1Hdelta1 and 1H epsilon1 atoms of four histidines (t1/2 approximately 0.1-300 s at 30 degrees C and pH approximately 7), as well as the nitrogen-bonded protons in the xylobio-imidazole and -isofagomine inhibitors, could be observed with chemical shifts between 10.2 and 17.6 ppm. The histidine pKa values and neutral tautomeric forms were determined from their pH-dependent 13C epsilon1-1H epsilon1 chemical shifts, combined with multiple-bond 1H delta2/epsilon1-15N delta1/epsilon2 scalar coupling patterns. Remarkably, these pKa values span more than 8 log units such that at the pH optimum of approximately 6 for Cex activity, His107 and His205 are positively charged (pKa > 10.4), His85 is neutral (pKa < 2.8), and both His80 (pKa = 7.9) and His114 (pKa = 8.1) are titrating between charged and neutral states. Furthermore, upon formation of the glycosyl-enzyme intermediate, the pKa value of His80 drops from 7.9 to <2.8, becoming neutral and accepting a hydrogen bond from an exocyclic oxygen of the bound sugar moiety. Changes in the pH-dependent activity of Cex due to mutation of His80 to an alanine confirm the importance of this interaction. The diverse ionization behaviors of the histidine residues are discussed in terms of their structural and functional roles in this model glycoside hydrolase.
Schubert
Mario
M
Department of Biochemistry and Molecular Biology, The Michael Smith Laboratory, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z3.
Poon
David K Y
DK
Wicki
Jacqueline
J
Tarling
Chris A
CA
Kwan
Emily M
EM
Nielsen
Jens E
JE
Withers
Stephen G
SG
McIntosh
Lawrence P
LP
D000409:Alanine / Q000378:metabolism*; D019943:Amino Acid Substitution; D001665:Binding Sites; D020134:Catalytic Domain; D040143:Cellulomonas / Q000201:enzymology; D043364:Endo-1,4-beta Xylanases / Q000737:chemistry; D006026:Glycoside Hydrolases / Q000378:metabolism*; D006639:Histidine / Q000032:analysis* / Q000737:chemistry; D006860:Hydrogen Bonding; D006863:Hydrogen-Ion Concentration; D019906:Nuclear Magnetic Resonance, Biomolecular; D011485:Protein Binding; D011522:Protons; D055672:Static Electricity; D013329:Structure-Activity Relationship
D011522:Protons; D006639:Histidine; D006026:Glycoside Hydrolases; D043364:Endo-1,4-beta Xylanases; D000409:Alanine