title: VIPER: an advanced software package to support high-throughput LC-MS peptide identification.
abstract: CONCLUSIONS
  The accurate mass and time (AMT) tag approach is used for analysis of large scale experiments by combining information generated over multiple datasets and instrument types. The VIPER software package is one of the key components of the data processing pipeline and implements automated algorithms to discover LC-MS features, align and match these LC-MS features to a database of peptides previously identified in LC-MS/MS analyses, and identify and quantify pairs of isotopically labeled peptides.
  
  
  BACKGROUND
  VIPER may be downloaded free of charge at http://ncrr.pnl.gov/software/
authors.affiliation: Pacific Northwest National Laboratory, Richland, WA 99354, USA.
authors.forename: Matthew E
authors.initials: ME
authors.lastname: Monroe
authors.forename: Nikola
authors.initials: N
authors.lastname: Tolić
authors.forename: Navdeep
authors.initials: N
authors.lastname: Jaitly
authors.forename: Jason L
authors.initials: JL
authors.lastname: Shaw
authors.forename: Joshua N
authors.initials: JN
authors.lastname: Adkins
authors.forename: Richard D
authors.initials: RD
authors.lastname: Smith
mesh_terms: D000465:Algorithms; D000595:Amino Acid Sequence; D002853:Chromatography, Liquid / Q000379:methods*; D013058:Mass Spectrometry / Q000379:methods*; D008969:Molecular Sequence Data; D010449:Peptide Mapping / Q000379:methods*; D010455:Peptides / Q000737:chemistry*; D020539:Sequence Analysis, Protein / Q000379:methods*; D012984:Software; D014584:User-Computer Interface
chemical_list: D010455:Peptides