[Gene expression profiles of K562 cells treated with total saponin of Panax ginseng].
OBJECTIVE
To investigate the effect of the total saponin of Panax ginseng (TSPG) on gene expression profile of K562 cells using microarray technique.


METHODS
The total RNA were extracted and purified from K562 cells treated by 200 microg/ml TSPG for 3 days, and untreated K562 cells cultured in parallel served as the control. cRNAs were synthesized and labeled with Cy3 and Cy5 respectively. The labeled cRNA fragments were hybridized with Agilent human 1B 60 mer oligonucleotide microarray, which was then scanned to reveal the changes of gene expression profile in relation to TSPG treatment.


RESULTS
Totally 362 differentially expressed genes were identified in TSPG-treated K562 cells, including 20 up-regulated ones (consisting of metabolism-associated genes, signal transduction-associated genes and cell receptor-associated genes etc) and 342 down-regulated ones (consisting of immunity and defense-associated genes, DNA-binding and transcription genes, metabolism-associated genes and cell cycle-associated genes etc). Changes in expressions of FOSL1, E2F2, CCNE2 and ODZ1 were confirmed by semi-quantitative RT-PCR.


CONCLUSIONS
TSPG may induce changes in the gene expression profile in k562 cells possibly relevant to the anti-tumor mechanism of TSPG.
Zhou
Ye
Y
Institute of Genetic Engineering, Southern Medical University, Guangzhou 510515, China. lzhouye@126.com
Ma
Wen-li
WL
Qu
Rong-mei
RM
Xiang
Zheng
Z
Li
Chang-zheng
CZ
Zheng
Wen-ling
WL
D020869:Gene Expression Profiling; D006801:Humans; D020014:K562 Cells; D020411:Oligonucleotide Array Sequence Analysis; D005894:Panax / Q000737:chemistry*; D012503:Saponins / Q000494:pharmacology*
D012503:Saponins