title: Development and evaluation of SYBR Green I-based one-step real-time RT-PCR assay for detection and quantification of Chikungunya virus.
abstract: The development of a one-step SYBR Green I-based real-time RT-PCR assay is reported for detection and quantification of Chikungunya virus (CHIKV) in acute-phase patient serum samples by targeting the E1 structural gene. A linear relationship was obtained between the virus concentration and cycle threshold (C(t)) value over a range of 10(7)-0.1PFU/ml. The reported assay was found to be 10-fold more sensitive compared to conventional RT-PCR with a detection limit of 0.1PFU/ml. The feasibility of this reported assay system for clinical diagnosis was validated with 51 suspected acute-phase serum samples of the recent CHIKV epidemic in southern India, 2006. The comparative evaluation with acute-phase patient serum samples revealed the higher sensitivity of real-time RT-PCR assay by picking up six additional samples with low copy number of template. None of the healthy serum samples analyzed in this study showed amplification. The quantification of the viral load in the acute-phase serum samples was also determined employing the standard curve, which varies from 0.1 to 10(7)PFU/ml. These findings demonstrated that the reported assay has the potential usefulness for clinical diagnosis due to simultaneous detection and quantification of Chikungunya virus in acute-phase patient serum samples.
authors.affiliation: Division of Virology, Defence Research & Development Establishment, Jhansi Road, Gwalior 474002, Madhya Pradesh, India. santhuvet4u@rediffmail.com
authors.forename: S R
authors.initials: SR
authors.lastname: Santhosh
authors.forename: M M
authors.initials: MM
authors.lastname: Parida
authors.forename: P K
authors.initials: PK
authors.lastname: Dash
authors.forename: A
authors.initials: A
authors.lastname: Pateriya
authors.forename: B
authors.initials: B
authors.lastname: Pattnaik
authors.forename: H K
authors.initials: HK
authors.lastname: Pradhan
authors.forename: N K
authors.initials: NK
authors.lastname: Tripathi
authors.forename: S
authors.initials: S
authors.lastname: Ambuj
authors.forename: N
authors.initials: N
authors.lastname: Gupta
authors.forename: P
authors.initials: P
authors.lastname: Saxena
authors.forename: P V
authors.initials: PV
authors.lastname: Lakshmana Rao
mesh_terms: D018354:Alphavirus Infections / Q000175:diagnosis / Q000821:virology; D052160:Benzothiazoles; D002646:Chikungunya virus / Q000235:genetics / Q000302:isolation & purification*; D017931:DNA Primers; D003959:Diamines; D005456:Fluorescent Dyes / Q000378:metabolism; D006801:Humans; D009930:Organic Chemicals / Q000378:metabolism; D011804:Quinolines; D012367:RNA, Viral / Q000097:blood / Q000302:isolation & purification; D020133:Reverse Transcriptase Polymerase Chain Reaction / Q000379:methods*; D012680:Sensitivity and Specificity; D013045:Species Specificity; D014759:Viral Envelope Proteins / Q000235:genetics; D019562:Viral Load
chemical_list: D052160:Benzothiazoles; D017931:DNA Primers; D003959:Diamines; D005456:Fluorescent Dyes; D009930:Organic Chemicals; D011804:Quinolines; D012367:RNA, Viral; D014759:Viral Envelope Proteins; C098022:SYBR Green I