title: Characterization of a multifunctional inositol phosphate kinase from rice and barley belonging to the ATP-grasp superfamily.
abstract: OsIpk and HvIpk, inositol phosphate kinases, were cloned from rice (Oryza sativa L. var. indica, IR64) and barley (Hordeum vulgare) respectively. Sequence alignment showed that they belong to the ATP-grasp family, which includes inositol 1,3,4-trisphosphate 5/6-kinase from humans and Arabidopsis. Residues that are binding sites for ATP and coordinate magnesium in absence or presence of inositol phosphate are conserved and in total 23 residues are invariant among the twelve aligned inositol phosphate kinases. The genes were heterologously expressed in Escherichia coli and kinase activity assays with 17 different isomers of inositol mono-/di-/tri-/tetra-/pentaphosphate as well as phytate were performed. The strongest activity for both kinases was observed with Ins(3,4,5,6)P(4), which candidates as the primary substrate for these kinases in plants. Several species-specific differences between the two recombinant Ipks were observed. Rice OsIpk showed detectable kinase activity towards eight different substrates, whereas barley HvIpk showed kinase activity with all the substrates including inositol mono- and bisphosphates. HvIpk showed 3-kinase activity towards the Ins(1,4,5)P(3) substrate and it also interconverted the two substrates Ins(1,3,4,5)P(4) and Ins(1,3,4,6)P(4) by isomerase activity, which was not observed for the rice homologue. Both OsIpk and HvIpk had no detectable 2-kinase activity. Furthermore, the two Ipks showed phosphatase activity towards several inositol phosphates. Expression analysis by RT-PCR demonstrated that the Ipk gene was equally expressed in different tissues and developmental stages. Taken together, these results show that the Ipk kinase plays a significant role in the inositol phosphate interacting network in plants.
authors.affiliation: Department of Agricultural Sciences, Faculty of Life Science, University of Copenhagen, Frederiksberg C, Denmark.
authors.forename: Lone
authors.initials: L
authors.lastname: Josefsen
authors.forename: Lisbeth
authors.initials: L
authors.lastname: Bohn
authors.forename: Mikael Blom
authors.initials: MB
authors.lastname: Sørensen
authors.forename: Søren K
authors.initials: SK
authors.lastname: Rasmussen
mesh_terms: D000595:Amino Acid Sequence; D003001:Cloning, Molecular; D017343:Genes, Plant; D001467:Hordeum / Q000201:enzymology* / Q000235:genetics*; D007295:Inositol Phosphates / Q000378:metabolism; D008969:Molecular Sequence Data; D012275:Oryza / Q000201:enzymology* / Q000235:genetics*; D017853:Phosphotransferases (Alcohol Group Acceptor) / Q000235:genetics* / Q000378:metabolism; D010802:Phylogeny; D010833:Phytic Acid / Q000378:metabolism; D011994:Recombinant Proteins / Q000235:genetics / Q000378:metabolism; D017386:Sequence Homology, Amino Acid; D013045:Species Specificity; D013379:Substrate Specificity
chemical_list: D007295:Inositol Phosphates; D011994:Recombinant Proteins; D010833:Phytic Acid; D017853:Phosphotransferases (Alcohol Group Acceptor)