title: Distribution of orphan metabolic activities.
abstract: A significant fraction (30-40%) of known metabolic activities is currently orphan. Although orphan activities have been biochemically characterized, we do not know a single gene responsible for these reactions in any organism. The problem of orphan activities represents one of the major challenges of modern biochemistry. We analyze the distribution of orphans across biochemical space, through years of enzymatic characterization, and by biological organisms. We find that orphan metabolic activities have been accumulating for many decades. They are widely distributed across enzymatic functional space and metabolic network neighborhoods. Although orphans are relatively more abundant in less studied species, over half of orphan reactions have been experimentally characterized in more than one organism. Shrinking the space of orphan activities will likely require a close collaboration between computational and experimental laboratories.
authors.affiliation: Center for Computational Biology and Bioinformatics and Department of Biomedical Informatics, Columbia University, 1130 Nicholas Ave., Irving Cancer Research Center, New York, NY 10032, USA.
authors.forename: Lifeng
authors.initials: L
authors.lastname: Chen
authors.forename: Dennis
authors.initials: D
authors.lastname: Vitkup
mesh_terms: D004789:Enzyme Activation; D004798:Enzymes / Q000235:genetics* / Q000378:metabolism*; D019143:Evolution, Molecular; D008957:Models, Genetic; D015233:Models, Statistical; D015398:Signal Transduction / Q000235:genetics*; D013045:Species Specificity; D016008:Statistical Distributions
chemical_list: D004798:Enzymes