Stochastic simulation GUI for biochemical networks.
BACKGROUND
This article describes the development of a useful graphical user interface for stochastic simulation of biochemical networks which allows model builders to run stochastic simulations of their models and perform statistical analysis on the results. These include the construction of correlations, power-spectral densities and transfer functions between selected inputs and outputs.


BACKGROUND
The software is licensed under the BSD open source license and is available at http://sourceforge.net/projects/jdesigner. In addition, a more detailed account of the algorithms employed in the tool can be found at the Wiki at http://www.sys-bio.org/sbwWiki.


BACKGROUND
Supplementary data are available at Bioinformatics online.
Vallabhajosyula
Ravishankar Rao
RR
Keck Graduate Institute, 535 Watson Drive, Claremont, CA 91711, USA. rrao@kgi.edu
Sauro
Herbert M
HM
D000465:Algorithms; D019295:Computational Biology / Q000379:methods*; D003196:Computer Graphics; D003198:Computer Simulation; D008954:Models, Biological; D011381:Programming Languages; D012984:Software; D013269:Stochastic Processes; D049490:Systems Biology / Q000379:methods*; D013997:Time Factors; D014584:User-Computer Interface