Assessing quality and functionality of DNA from fresh and archival dried blood spots and recommendations for quality control guidelines.
BACKGROUND
Dried blood spots (DBS) are a convenient and inexpensive method for biobanking. Although many countries have established population-based DBS biobanks from neonatal screening programs, the quality and usefulness of DNA from DBS have not been extensively assessed.


METHODS
We compared 4 common DNA extraction methods (Qiagen, EZNA, Chelex 100, and alkaline lysis) in a pilot study using fresh DBS with known lymphocyte count. We assessed suitability for multiple displacement amplification (MDA) and subsequent single-nucleotide polymorphism (SNP) analyses. We selected the EZNA method for DNA extraction from archival samples up to 27 years old, stored at room temperature or -20 degrees C, and SNP analyses were performed after MDA.


RESULTS
Extraction using alkaline lysis failed in most tests, and Chelex 100 was unsuccessful in real-time PCR, whereas the EZNA and Qiagen methods were successful by all evaluated quality indices. DNA extraction by EZNA, MDA, and SNP analyses were successful for the archival samples stored at -20 degrees C.


CONCLUSIONS
Routine protocols for evaluation of the quality and functional integrity of DNA based on DNA yield, DNA size, and quantification of amplifiable DNA allow use of sufficient template for MDA and successful SNP analyses from both primary DBS extract and MDA product. A single 3-mm disc can yield sufficient DNA for several thousand SNP analyses. DNA from DBS is thus suitable for genetic epidemiology studies.
Sjöholm
Malin Ida Linnea
MI
The Swedish National Biobanking Program, Lund University, Malmö University Hospital, Malmö, Sweden.
Dillner
Joakim
J
Carlson
Joyce
J
D001771:Blood Banks; D001800:Blood Specimen Collection / Q000592:standards*; D004247:DNA / Q000097:blood* / Q000235:genetics / Q000302:isolation & purification; D006801:Humans; D007231:Infant, Newborn; D015997:Neonatal Screening; D010865:Pilot Projects; D020641:Polymorphism, Single Nucleotide; D017410:Practice Guidelines as Topic; D011786:Quality Control; D013696:Temperature; D013997:Time Factors
D004247:DNA