title: Diversity of soil mycobacterium isolates from three sites that degrade polycyclic aromatic hydrocarbons.
abstract: OBJECTIVE
  This paper investigates the diversity of polycyclic aromatic hydrocarbon (PAH)-degrading mycobacterium isolates from three different sites within United States: Montana, Texas and Indiana.
  
  
  RESULTS
  All five mycobacterium isolates differed in chromosomal restriction enzyme-fragmentation patterns; three isolates possessed linear plasmids. The DNA sequence between the murA and rRNA genes were divergent but the sequence upstream of nidBA genes, encoding a dioxygenase involved in pyrene oxidation, was more highly conserved. Long-chain fatty acid analysis showed most similarity between three isolates from the same Montana site. All isolates were sensitive to rifampicin and isoniazid, used in tuberculosis treatment, and to syringopeptins, produced by plant-associated pseudomonads. Biofilm growth was least for isolate MCS that grew on plate medium as rough-edged colonies. The patterns of substrate utilization in Biolog plates showed clustering of the Montana isolates compared with Mycobacterium vanbaalenii and Mycobacterium gilvum.
  
  
  CONCLUSIONS
  The five PAH-degrading mycobacterium isolates studied differ in genetic and biochemical properties.
  
  
  CONCLUSIONS
  Different properties with respect to antibiotic susceptibility, substrate utilization and biofilm formation could influence the survival in soil of the microbe and their suitability for use in bioaugmentation.
authors.affiliation: Department of Biology, Utah State University, Logan, Utah, USA.
authors.forename: C D
authors.initials: CD
authors.lastname: Miller
authors.forename: R
authors.initials: R
authors.lastname: Child
authors.forename: J E
authors.initials: JE
authors.lastname: Hughes
authors.forename: M
authors.initials: M
authors.lastname: Benscai
authors.forename: J P
authors.initials: JP
authors.lastname: Der
authors.forename: R C
authors.initials: RC
authors.lastname: Sims
authors.forename: A J
authors.initials: AJ
authors.lastname: Anderson
mesh_terms: D000900:Anti-Bacterial Agents / Q000494:pharmacology; D001483:Base Sequence; D001673:Biodegradation, Environmental; D044822:Biodiversity; D018441:Biofilms / Q000254:growth & development; D002473:Cell Wall / Q000502:physiology; D003470:Culture Media; D004269:DNA, Bacterial / Q000235:genetics; D021901:DNA, Intergenic / Q000235:genetics; D005798:Genes, Bacterial / Q000235:genetics; D016680:Genome, Bacterial / Q000235:genetics; D008969:Molecular Sequence Data; D009161:Mycobacterium / Q000187:drug effects / Q000235:genetics / Q000378:metabolism*; D010802:Phylogeny; D010933:Plankton; D011084:Polycyclic Aromatic Hydrocarbons / Q000378:metabolism*; D012329:RNA, Bacterial / Q000235:genetics; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012988:Soil Microbiology
chemical_list: D000900:Anti-Bacterial Agents; D003470:Culture Media; D004269:DNA, Bacterial; D021901:DNA, Intergenic; D011084:Polycyclic Aromatic Hydrocarbons; D012329:RNA, Bacterial; D012336:RNA, Ribosomal, 16S