title: Microbial population dynamics in a thermophilic methane digester fed with garbage.
abstract: The diversity of microbial communities in three full-scale thermophilic anaerobic digesters which treated garbage, sewage sludge and livestock wastes (hereafter called TGD, TSD and TLD, respectively) was investigated using 16S rDNA clone libraries in triplicate. The population dynamics of TGD were also studied. The purposes were to show the microbial diversity in each reactor and to suggest which key microbes in a thermophilic methane digester fed with garbage, including a check of reproducibility and the suggestion of an error range in this molecular biology method. 736 clones were identified, and the maximum error was estimated to be around +/-10% for the same OTU (operational taxonomic unit) and for most detected OTUs. The most frequently detected OTU shows a close relationship to Uncultured bacterium clone MBA08, Unidentified bacterium clone TUG22 and Uncultured archaeal symbiont PA204 in TGD, TSD and TLD, respectively. The microbial population dynamics in TGD were studied over a period of 90 days, and the occupying ratios of Bacillus infernus and Methanothermobacter wolfeii were shown to change with the change in VFA concentration. From the dynamic change and characteristics of the microbes, it is concluded that Bacillus infernus and Methanothermobacter wolfeii played an important role and were recommended as key microbes in TGD.
authors.affiliation: Department of Urban & Environmental Engineering, Kyoto University, Kyoto, Japan. cheonjihoon@biwa.eqc.kyoto-u.ac.jp
authors.forename: J
authors.initials: J
authors.lastname: Cheon
authors.forename: F
authors.initials: F
authors.lastname: Hong
authors.forename: T
authors.initials: T
authors.lastname: Hidaka
authors.forename: H
authors.initials: H
authors.lastname: Koshikawa
authors.forename: H
authors.initials: H
authors.lastname: Tsuno
mesh_terms: D001421:Bacteria, Anaerobic / Q000235:genetics / Q000502:physiology*; D044822:Biodiversity; D019149:Bioreactors; D016000:Cluster Analysis; D017931:DNA Primers; D008697:Methane / Q000096:biosynthesis*; D010802:Phylogeny; D016133:Polymerase Chain Reaction; D011157:Population Dynamics; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012037:Refuse Disposal / Q000379:methods*; D017422:Sequence Analysis, DNA; D013045:Species Specificity
chemical_list: D017931:DNA Primers; D012336:RNA, Ribosomal, 16S; D008697:Methane