title: Phosphorylation effect on the GSSS peptide conformation in water: infrared, vibrational circular dichroism, and circular dichroism experiments and comparisons with molecular dynamics simulations.
abstract: The phosphorylation effect on the small peptide conformation in water has not been clearly understood yet, despite the widely acknowledged notion that control of protein activity by phosphorylation works mainly by inducing conformational change. To elucidate the detailed mechanism, we performed infrared (IR) absorption and vibrational and electronic circular dichroism studies of both unphosphorylated and phosphorylated tetrapeptides, GSSS 1 and GSSpS 2. The solution structure of the tetrapeptide is found to be little dependent on the presence of the neutral or negatively charged phosphoryl group, and to be a mixture of extended structures including polyproline II (PII) and beta-sheet conformations. The additional band at 1598 cm(-1) in the amide I IR spectrum of the phosphorylated peptide GSSpS at neutral pD appears to be clear spectroscopic evidence for direct intramolecular hydrogen-bonding interaction between the side chain dianionic phosphoryl group and the backbone amide proton. On the basis of amide I IR band analyses, the authors found that the probability of finding the phosphoryl group strongly H bonded to the backbone proton in GSSpS is about 43% at pD 7.0 and 37 degrees C. Such a H-bonding interaction in GSSpS has the biological standard enthalpy and entropy of -15.1 kJ/mol and -51.2 J/K mol, respectively. Comparisons between the experimentally measured IR and VCD spectra and the numerically simulated ones suggested that the currently available force field parameters need to be properly modified. The results in this paper may shed light on an unknown mechanism of controlling the peptide conformation by phosphorylation.
authors.affiliation: Department of Chemistry, Korea University, Seoul 136-701, Korea and Center for Multidimensional Spectroscopy, Korea University, Seoul 136-701, Korea.
authors.forename: Kyung-Koo
authors.initials: KK
authors.lastname: Lee
authors.forename: Cheonik
authors.initials: C
authors.lastname: Joo
authors.forename: Seongeun
authors.initials: S
authors.lastname: Yang
authors.forename: Hogyu
authors.initials: H
authors.lastname: Han
authors.forename: Minhaeng
authors.initials: M
authors.lastname: Cho
mesh_terms: D000042:Absorption; D002942:Circular Dichroism / Q000379:methods*; D003198:Computer Simulation; D006358:Hot Temperature; D006860:Hydrogen Bonding; D008958:Models, Molecular; D008968:Molecular Conformation; D010455:Peptides / Q000737:chemistry*; D010766:Phosphorylation; D011336:Probability; D011487:Protein Conformation; D017433:Protein Structure, Secondary; D013055:Spectrophotometry, Infrared; D013696:Temperature; D014867:Water / Q000737:chemistry*
chemical_list: D010455:Peptides; D014867:Water