title: Influence of the protein environment on the redox potentials of flavodoxins from Clostridium beijerinckii.
abstract: The flavin mononucleotide (FMN) quinones in flavodoxin have two characteristic redox potentials, namely, Em(FMNH./FMNH-) for the one-electron reduction of the protonated FMN (E1) and Em(FMN/FMNH.) for the proton-coupled one-electron reduction (E2). These redox potentials in native and mutant flavodoxins obtained from Clostridium beijerinckii were calculated by considering the protonation states of all titratable sites as well as the energy contributed at the pKa value of FMN during protonation at the N5 nitrogen (pKa(N5)). E1 is sensitive to the subtle differences in the protein environments in the proximity of FMN. The protein dielectric volume that prevents the solvation of charged FMN quinones is responsible for the downshift of 130-160 mV of the E1 values with respect to that in an aqueous solution. The influence of the negatively charged 5'-phosphate group of FMN quinone on E1 could result in a maximum shift of 90 mV. A dramatic difference of 130 mV in the calculated E2 values of FMN quinone of the native and G57T mutant flavodoxins is due to the difference in the pKa(N5) values. This is due to the difference in the influence exerted by the carbonyl group of the protein backbone at residue 57.
authors.affiliation: Department of Chemistry, University of Southern California, Los Angeles, California 90089, USA. hzi1@usc.edu
authors.forename: Hiroshi
authors.initials: H
authors.lastname: Ishikita
mesh_terms: D019943:Amino Acid Substitution; D046970:Clostridium beijerinckii / Q000737:chemistry / Q000235:genetics / Q000378:metabolism*; D004583:Electrons; D005486:Flavin Mononucleotide / Q000737:chemistry / Q000378:metabolism*; D005418:Flavodoxin / Q000737:chemistry / Q000235:genetics / Q000378:metabolism*; D020125:Mutation, Missense; D009584:Nitrogen / Q000737:chemistry / Q000378:metabolism; D010084:Oxidation-Reduction; D011522:Protons; D011809:Quinones / Q000737:chemistry / Q000378:metabolism
chemical_list: D005418:Flavodoxin; D011522:Protons; D011809:Quinones; D005486:Flavin Mononucleotide; D009584:Nitrogen