Improved cyclodextrin-based receptors for camptothecin by inverse virtual screening.
We report the computer-aided optimization of a synthetic receptor for a given guest molecule, based on inverse virtual screening of receptor libraries. As an example, a virtual set of beta-cyclodextrin (beta-CD) derivatives was generated as receptor candidates for the anticancer drug camptothecin. We applied the two docking tools AutoDock and GlamDock to generate camptothecin complexes of every candidate receptor. Scoring functions were used to rank all generated complexes. From the 10 % top-ranking candidates nine were selected for experimental validation. They were synthesized by reaction of heptakis-[6-deoxy-6-iodo]-beta-CD with a thiol compound to form the hepta-substituted beta-CDs. The stabilities of the camptothecin complexes obtained from solubility measurements of five of the nine CD derivatives were significantly higher than for any other CD derivative known from literature. The remaining four CD derivatives were insoluble in water. In addition, corresponding mono-substituted CD derivatives were synthesized that also showed improved binding constants. Among them the 9-H-purine derivative was the best, being comparable to the investigated hepta-substituted beta-CDs. Since the measured binding free energies correlated satisfactorily with the calculated scores, the applied scoring functions appeared to be appropriate for the selection of promising candidates for receptor synthesis.
Steffen
Andreas
A
Computational Biology and Applied Algorithmics, Max-Planck-Institut für Informatik, Stuhlsatzenhausweg 85, 66123 Saarbrücken, Germany.
Thiele
Carolin
C
Tietze
Simon
S
Strassnig
Christian
C
Kämper
Andreas
A
Lengauer
Thomas
T
Wenz
Gerhard
G
Apostolakis
Joannis
J
D002166:Camptothecin / Q000737:chemistry*; D015195:Drug Design; D008958:Models, Molecular; D015394:Molecular Structure; D012995:Solubility; D047392:beta-Cyclodextrins / Q000138:chemical synthesis* / Q000737:chemistry*
D047392:beta-Cyclodextrins; D002166:Camptothecin