title: Rhizosphere persistence of three Pythium oligandrum strains in tomato soilless culture assessed by DNA macroarray and real-time PCR.
abstract: In tomato soilless culture, plant-disease optimal control and growth promotion are achieved when the rhizosphere is heavily colonized by the biocontrol agent Pythium oligandrum. Discrepancies in performance are generally attributed to the poor persistence of P. oligandrum on roots. In this study, three selected strains of P. oligandrum were introduced into the rhizosphere of greenhouse-grown tomato plants, and their persistence was assessed by DNA macroarray hybridization and real-time PCR. The experimental data from DNA detection and plate counting were compared. PCR-based methods detected P. oligandrum throughout the 6-month growing season, whereas plate counting indicated its presence only over the first 3 months. Moreover, the DNA array method provided information about the various Pythium species present in the rhizosphere: P. dissotocum was frequently detected on roots of plants, without distinction between plants inoculated or not inoculated with the antagonist. The detection of other Pythium species was noticed sporadically (P. ultimum, P. sylvaticum and P. intermedium), independent of the treatment. Even though the yield enhancement is not significant throughout the entire growing season, data obtained from epidemiological studies demonstrate an enhancement of P. oligandrum persistence on the rhizosphere of plants and less use of mycoparasitism.
authors.affiliation: Laboratoire de Biodiversité et d'Ecologie Microbienne, Université de Bretagne Occidentale, Plouzané, France. gaetan.lefloch@univ-brest.fr
authors.forename: Gaetan
authors.initials: G
authors.lastname: Le Floch
authors.forename: James
authors.initials: J
authors.lastname: Tambong
authors.forename: Jessica
authors.initials: J
authors.lastname: Vallance
authors.forename: Yves
authors.initials: Y
authors.lastname: Tirilly
authors.forename: André
authors.initials: A
authors.lastname: Lévesque
authors.forename: Patrice
authors.initials: P
authors.lastname: Rey
mesh_terms: D015169:Colony Count, Microbial; D005638:Fruit / Q000254:growth & development / Q000382:microbiology; D018551:Solanum lycopersicum / Q000254:growth & development / Q000382:microbiology*; D009693:Nucleic Acid Hybridization; D018517:Plant Roots / Q000382:microbiology; D016133:Polymerase Chain Reaction; D011775:Pythium / Q000145:classification* / Q000235:genetics / Q000254:growth & development