title: Rapid microsphere assay for identification of cryptosporidium hominis and cryptosporidium parvum in stool and environmental samples.
abstract: Cryptosporidium hominis and Cryptosporidium parvum are associated with massive disease outbreaks worldwide. Because these two species have different transmission cycles, identification of these parasites to the species level in clinical samples may provide laboratory data of crucial importance in epidemiologic investigations. To date, the most reliable way to differentiate C. hominis and C. parvum is based on DNA sequencing analysis of PCR amplicons. Although this approach is very effective for differentiation of Cryptosporidium species, it is labor-intensive and time-consuming compared with methods that do not require DNA sequencing analysis as an additional step and that have been successfully used for specific identification of a number of pathogens. In this study, we describe a novel Luminex-based assay that can differentiate C. hominis from C. parvum in a rapid and cost-effective manner. The assay was validated by testing a total of 143 DNA samples extracted from clinical specimens, environmental samples, or samples artificially spiked with Cryptosporidium oocysts. As few as 10 oocysts per 300 microl of stools could be detected with this assay. The assay format includes species-specific probes linked to carboxylated Luminex microspheres that hybridize to a Cryptosporidium microsatellite-2 region (ML-2) where C. hominis and C. parvum differ by one nucleotide substitution. The assay proved to be 100% specific when samples that had been characterized by direct fluorescent antibody test (DFA) and DNA sequencing analysis were tested. In addition, the assay was more sensitive than DFA and provided species identification, which is an advantage for epidemiologic studies.
authors.affiliation: Scientific Resources Program, National Center for Infectious Diseases, Centers for Disease Control and Prevention, Public Health Service, U.S. Department of Health and Human Services, Atlanta, Georgia 30333, USA.
authors.forename: Kakali
authors.initials: K
authors.lastname: Bandyopadhyay
authors.forename: Kathryn L
authors.initials: KL
authors.lastname: Kellar
authors.forename: Iaci
authors.initials: I
authors.lastname: Moura
authors.forename: Maria Cristina
authors.initials: MC
authors.lastname: Casaqui Carollo
authors.forename: Thaddeus K
authors.initials: TK
authors.lastname: Graczyk
authors.forename: Susan
authors.initials: S
authors.lastname: Slemenda
authors.forename: Stephanie P
authors.initials: SP
authors.lastname: Johnston
authors.forename: Alexandre J
authors.initials: AJ
authors.lastname: da Silva
mesh_terms: D000818:Animals; D003457:Cryptosporidiosis / Q000469:parasitology*; D003458:Cryptosporidium / Q000145:classification* / Q000302:isolation & purification*; D004783:Environmental Microbiology; D005243:Feces / Q000469:parasitology*; D019085:Fluorescent Antibody Technique, Direct; D006801:Humans; D008863:Microspheres; D025202:Molecular Diagnostic Techniques / Q000379:methods*; D010274:Parasitology / Q000191:economics / Q000379:methods*; D012680:Sensitivity and Specificity; D017422:Sequence Analysis, DNA