title: Influence of epistasis and QTL x environment interaction on heading date of rice (Oryza sativa L.).
abstract: QTLs for heading date of rice (Oryza sativa L.) with additive, epistatic, and QTL x environment (QE) interaction effects were studied using a mixed-model-based composite interval mapping (MCIM) method and a double haploid (DH) population derived from IR64/Azucena in two crop seasons. Fourteen QTLs conferring heading date in rice, which were distributed on ten chromosomes except for chromosomes 5 and 9, were detected. Among these QTLs, eight had single-locus effects, five pairs had double-locus interaction effects, and two single-loci and one pair of double-loci showed QTL x environment interaction effects. All predicted values of QTL effects varied from 1.179 days to 2.549 days, with corresponding contribution ratios of 1.04%-4.84%. On the basis of the effects of the QTLs, the total genetic effects on rice heading date for the two parents and the two superior lines were predicted, and the putative reasons for discrepancies between predicted values and observed values, and the genetic potentiality in the DH population for improvement of heading date were discussed. These results are in agreement with previous results for heading date in rice, and the results provide further information, which indicate that both epistasis and QE interaction are important genetic basis for determining heading date in rice.
authors.affiliation: Institute of Bioinformatics, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China.
authors.forename: Guifu
authors.initials: G
authors.lastname: Liu
authors.forename: Jian
authors.initials: J
authors.lastname: Yang
authors.forename: Haiming
authors.initials: H
authors.lastname: Xu
authors.forename: Jun
authors.initials: J
authors.lastname: Zhu
mesh_terms: D002874:Chromosome Mapping; D004777:Environment; D004843:Epistasis, Genetic; D017343:Genes, Plant / Q000235:genetics*; D006238:Haploidy; D012275:Oryza / Q000033:anatomy & histology / Q000235:genetics* / Q000254:growth & development*; D010641:Phenotype; D040641:Quantitative Trait Loci / Q000235:genetics*; D012984:Software