MyrSINEs: a novel SINE family in the anteater genomes.
Recent rapid generation of genomic sequence data has allowed many researchers to perform comparative analyses in various mammalian species. However, characterization of transposable elements, such as short interspersed repetitive elements (SINEs), has not been reported for several mammalian groups. Because SINEs occupy a large portion of the mammalian genome, they are believed to have contributed to the constitution and diversification of the host genomes during evolution. In the present study, we characterized a novel SINE family in the anteater genomes and designated it the MyrSINE family. Typical SINEs consist of a tRNA-related, a tRNA-unrelated and an AT-rich (or poly-A) region. MyrSINEs have only tRNA-related and poly-A regions; they are included in a group called t-SINE. The tRNA-related regions of the MyrSINEs were found to be derived from tRNA(Gly). We demonstrate that the MyrSINE family can be classified into three subfamilies. Two of the MyrSINE subfamilies are distributed in the genomes of both giant anteater and tamandua, while the other is present only in the giant anteater. We discuss the evolutionary history of MyrSINEs and their relationship to the evolution of anteaters. We also speculate that the simple structure of t-SINEs may be a potential evolutionary source for the generation of the typical SINE structure.
Nishihara
Hidenori
H
Department of Biological Sciences, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama 226-8501, Japan.
Kuno
Shuichi
S
Nikaido
Masato
M
Okada
Norihiro
N
D000818:Animals; D001483:Base Sequence; D005075:Biological Evolution; D019143:Evolution, Molecular; D016678:Genome; D008969:Molecular Sequence Data; D015394:Molecular Structure; D010802:Phylogeny; D011061:Poly A; D012343:RNA, Transfer; D020086:Short Interspersed Nucleotide Elements; D004490:Xenarthra / Q000235:genetics*
D011061:Poly A; D012343:RNA, Transfer