Conformational analysis of arginine in gas phase--a strategy for scanning the potential energy surface effectively.
The determination of all possible low-lying energy conformers of flexible molecules is of fundamental interest for various applications. It necessitates a reliable conformational search that is able to detect all important minimum structures and calculates the energies on an adequate level of theory. This work presents a strategy to identify low-energy conformers using arginine as an example by means of a force-field based conformational search in combination with high-level geometry optimizations (RI-MP2/TZVPP+). The methods used for various stages in the conformational search strategy are shown and various pitfalls are discussed. We can show that electronic energies calculated on a DFT level of theory with standard exchange-correlation functionals strongly underestimate the intramolecular stabilization resulting from stacked orientations of the guanidine and carbonyl moiety of arginine due to the deficiency of DFT to describe dispersion effects. In this case by usage of electron correlation methods, low energy conformers comprising stacked arrangements that are counterintuitive become favorable.
Schlund
Sebastian
S
Institute for Organic Chemistry, University of Wuerzburg, Am Hubland, 97074 Wuerzburg, Germany.
Müller
Robert
R
Grassmann
Carsten
C
Engels
Bernd
B
D001120:Arginine / Q000737:chemistry*; D003198:Computer Simulation; D004583:Electrons; D005740:Gases / Q000737:chemistry*; D006860:Hydrogen Bonding; D008958:Models, Molecular; D008968:Molecular Conformation; D013499:Surface Properties
D005740:Gases; D001120:Arginine