Model of peptide bond-aromatic ring interaction: correlated ab initio quantum chemical study.
Aromatic ring-peptide bond interactions (modeled as benzene and formamide, N-methylformamide and N-methylacetamide) are studied by means of advanced computational chemistry methods: second-order Möller-Plesset (MP2), coupled-cluster single and double excitation model [CCSD(T)], and density functional theory with dispersion (DFT-D). The geometrical preferences of these interactions as well as their interaction energy content, in both parallel and T-shaped arrangements, are investigated. The stabilization energy reaches a value of over 5 kcal/mol for the N-methylformamide-benzene complex at the CCSD(T)/complete basis set (CBS) level. Decomposition of interaction energy by the DFT-symmetry-adapted perturbation treatment (SAPT) technique shows that the parallel and T-shaped arrangements, although similar in their total interaction energies, differ significantly in the proportion of electrostatic and dispersion terms.
Bendová
Lada
L
Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, and Center for Biomolecules and Complex Molecular Systems, Flemingovo namesti 2, 166 10 Prague 6, Czech Republic.
Jurecka
Petr
P
Hobza
Pavel
P
Vondrásek
Jirí
J
D000465:Algorithms; D001554:Benzene / Q000737:chemistry; D004735:Energy Transfer; D008956:Models, Chemical; D008958:Models, Molecular; D010455:Peptides / Q000737:chemistry*
D010455:Peptides; D001554:Benzene