Crystal structures of complexes of N-butyl- and N-nonyl-deoxynojirimycin bound to acid beta-glucosidase: insights into the mechanism of chemical chaperone action in Gaucher disease.
Gaucher disease is caused by mutations in the gene encoding acid beta-glucosidase (GlcCerase), resulting in glucosylceramide (GlcCer) accumulation. The only currently available orally administered treatment for Gaucher disease is N-butyl-deoxynojirimycin (Zavesca, NB-DNJ), which partially inhibits GlcCer synthesis, thus reducing levels of GlcCer accumulation. NB-DNJ also acts as a chemical chaperone for GlcCerase, although at a different concentration than that required to completely inhibit GlcCer synthesis. We now report the crystal structures, at 2A resolution, of complexes of NB-DNJ and N-nonyl-deoxynojirimycin (NN-DNJ) with recombinant human GlcCerase, expressed in cultured plant cells. Both inhibitors bind at the active site of GlcCerase, with the imino sugar moiety making hydrogen bonds to side chains of active site residues. The alkyl chains of NB-DNJ and NN-DNJ are oriented toward the entrance of the active site where they undergo hydrophobic interactions. Based on these structures, we make a number of predictions concerning (i) involvement of loops adjacent to the active site in the catalytic process, (ii) the nature of nucleophilic attack by Glu-340, and (iii) the role of a conserved water molecule located in a solvent cavity adjacent to the active site. Together, these results have significance for understanding the mechanism of action of GlcCerase and the mode of GlcCerase chaperoning by imino sugars.
Brumshtein
Boris
B
Departments of Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel.
Greenblatt
Harry M
HM
Departments of Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel.
Butters
Terry D
TD
Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, United Kingdom.
Shaaltiel
Yoseph
Y
Protalix Biotherapeutics, 2 Snunit Street, Science Park, Carmiel 20100, Israel.
Aviezer
David
D
Protalix Biotherapeutics, 2 Snunit Street, Science Park, Carmiel 20100, Israel.
Silman
Israel
I
Departments of Neurobiology, Weizmann Institute of Science, Rehovot 76100, Israel.
Futerman
Anthony H
AH
Biological Chemistry, Weizmann Institute of Science, Rehovot 76100, Israel. Electronic address: tony.futerman@weizmann.ac.il.
Sussman
Joel L
JL
Departments of Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel.
D017485:1-Deoxynojirimycin / Q000008:administration & dosage / Q000031:analogs & derivatives* / Q000737:chemistry; D000284:Administration, Oral; D001665:Binding Sites / Q000502:physiology; D018360:Crystallography, X-Ray; D004791:Enzyme Inhibitors / Q000008:administration & dosage / Q000737:chemistry*; D005776:Gaucher Disease / Q000188:drug therapy / Q000201:enzymology*; D005962:Glucosylceramidase / Q000737:chemistry*; D005963:Glucosylceramides / Q000096:biosynthesis / Q000737:chemistry; D006801:Humans; D057927:Hydrophobic and Hydrophilic Interactions; D018832:Molecular Chaperones / Q000737:chemistry*; D011994:Recombinant Proteins / Q000737:chemistry; D013329:Structure-Activity Relationship
D004791:Enzyme Inhibitors; D005963:Glucosylceramides; D018832:Molecular Chaperones; D011994:Recombinant Proteins; D017485:1-Deoxynojirimycin; C059896:miglustat; D005962:Glucosylceramidase