Molecular ecology of nifH genes and transcripts in the eastern Mediterranean Sea.
The eastern Mediterranean Sea is one of the most extreme oligotrophic oceanic regions on earth in terms of nutrient concentrations and primary productivity. Nitrogen fixation has been suggested to contribute to the high N : P molar ratios of approximately 28:1 found in this region. Surprisingly, no molecular biological work has been performed in situ to assess whether N(2) fixation genes actually occur in the eastern Mediterranean Sea, or to determine which organisms are responsible for this process. In this study, we examined the presence and expression of nitrogenase genes (nifH) in the upper water layer of the eastern Mediterranean. Clone libraries constructed from both DNA and reverse-transcribed PCR-amplified mRNA were examined and compared. We observed different nifH genes from diverse microbial groups, such as Cyanobacteria, Proteobacteria and methanogenic Archaea. Interestingly, numerous phylotypes were observed in coastal stations at the DNA level but none were active. However, in far offshore stations, the phylotypes observed at the DNA level were the ones that were actually active. Our preliminary study revealed diverse diazotrophs that possess and express nifH genes, which may support N(2) fixation in the eastern Mediterranean Sea.
Faculty of Biology, Technion-Israel Institute of Technology, Haifa 32000, Israel.
Dikla
D
Man-Aharonovich
Nurit
N
Kress
Edo Bar
EB
Zeev
Ilana
I
Berman-Frank
Oded
O
Béjà
D001105:Archaea / Q000235:genetics / Q000378:metabolism; D000458:Cyanobacteria / Q000235:genetics / Q000378:metabolism; D004269:DNA, Bacterial / Q000145:classification; D017753:Ecosystem; D008522:Mediterranean Sea; D008969:Molecular Sequence Data; D009584:Nitrogen / Q000378:metabolism; D010088:Oxidoreductases / Q000145:classification* / Q000235:genetics*; D020560:Proteobacteria / Q000235:genetics / Q000378:metabolism; D012329:RNA, Bacterial / Q000145:classification; D012333:RNA, Messenger / Q000145:classification; D012621:Seasons; D012623:Seawater / Q000382:microbiology*
D004269:DNA, Bacterial; D012329:RNA, Bacterial; D012333:RNA, Messenger; D010088:Oxidoreductases; C029130:nitrogenase reductase; D009584:Nitrogen