title: Wordom: a program for efficient analysis of molecular dynamics simulations.
abstract: Wordom is a versatile program for manipulation of molecular dynamics trajectories and efficient analysis of simulations. Original tools in Wordom include a procedure to evaluate significance of sampling for principal component analysis as well as modules for clustering multiple conformations and evaluation of order parameters for folding and aggregation. The program was developed with special emphasis on user-friendliness, effortless addition of new modules and efficient handling of large sets of trajectories.
authors: Department of Biochemistry, University of Zurich, CH-8057 Zurich, Switzerland.
authors: Michele
authors: M
authors: Seeber
authors: Marco
authors: M
authors: Cecchini
authors: Francesco
authors: F
authors: Rao
authors: Giovanni
authors: G
authors: Settanni
authors: Amedeo
authors: A
authors: Caflisch
mesh_terms: D000465:Algorithms; D003198:Computer Simulation; D003628:Database Management Systems; D030562:Databases, Protein; D016247:Information Storage and Retrieval / Q000379:methods*; D008956:Models, Chemical; D008958:Models, Molecular; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry* / Q000648:ultrastructure*; D012984:Software; D014584:User-Computer Interface
chemical_list: D011506:Proteins