title: Population genetic structure of three tree species in the mangrove genus Ceriops (Rhizophoraceae) from the Indo West Pacific.
abstract: Ceriops is a viviparous mangrove with widespread species Ceriops decandra and C. tagal, and an endemic species C. australis. Genetic diversity of the three species was screened in 30 populations collected from 23 locations in the Indo West Pacific (IWP) using Inter-simple sequence repeats (ISSR) and sequences of partial nuclear gene (G3pdh) and chloroplast DNA (trnV-trnM). At the species level, the total gene diversity (Ht) revealed by ISSRs was 0.270, 0.118, and 0.089 in C. decandra, C. tagal, and C. australis, respectively. A total of six haplotypes of G3pdh and five haplotypes of trnV-trnM were recognized among the three species. Only C. decandra was detected containing more than one haplotype from each sequence data set (four G3pdh haplotypes and three trnV-trnM haplotypes). At the population level, genetic diversity of Ceriops was relatively low inferred from ISSRs (He = 0.028, 0.023, and 0.053 in C. decandra, C. tagal, and C. australis, respectively). No haplotype diversity within population was detected from any of the three species. Cluster analysis based on ISSRs identified three major geographical groups in correspond to the East Indian Ocean (EIO), South China Sea (SCS), and North Australia (NA) in both C. decandra and C. tagal. The cladogram from DNA sequences also detected the same three geographical groups in C. decandra. Analysis of molecular variance (AMOVA) revealed that most of the total variation was accounted for by differentiation between the three major geographical regions of both C. decandra and C. tagal. The significant genetic structure may result from the geological events in these regions during the recent Pleistocene glaciations. This study also provided insights into the phylogenetics of Ceriops.
authors: State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, PR China.
authors: Yelin
authors: Y
authors: Huang
authors: Fengxiao
authors: F
authors: Tan
authors: Guohua
authors: G
authors: Su
authors: Shulin
authors: S
authors: Deng
authors: Hanghang
authors: H
authors: He
authors: Suhua
authors: S
authors: Shi
mesh_terms: D001483:Base Sequence; D005819:Genetic Markers; D014644:Genetic Variation / Q000235:genetics*; D005828:Genetics, Population; D018745:Genome, Plant; D018598:Minisatellite Repeats / Q000235:genetics; D009792:Oceans and Seas; D010140:Pacific Ocean; D010802:Phylogeny; D011110:Polymorphism, Genetic; D043982:Rhizophoraceae / Q000145:classification / Q000235:genetics*; D013045:Species Specificity
chemical_list: D005819:Genetic Markers