Wordom: a program for efficient analysis of molecular dynamics simulations.
Wordom is a versatile program for manipulation of molecular dynamics trajectories and efficient analysis of simulations. Original tools in Wordom include a procedure to evaluate significance of sampling for principal component analysis as well as modules for clustering multiple conformations and evaluation of order parameters for folding and aggregation. The program was developed with special emphasis on user-friendliness, effortless addition of new modules and efficient handling of large sets of trajectories.
Seeber
Michele
M
Department of Biochemistry, University of Zurich, CH-8057 Zurich, Switzerland.
Cecchini
Marco
M
Rao
Francesco
F
Settanni
Giovanni
G
Caflisch
Amedeo
A
D000465:Algorithms; D003198:Computer Simulation; D003628:Database Management Systems; D030562:Databases, Protein; D016247:Information Storage and Retrieval / Q000379:methods*; D008956:Models, Chemical; D008958:Models, Molecular; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry* / Q000648:ultrastructure*; D012984:Software; D014584:User-Computer Interface
D011506:Proteins