title: Virus isolation vs RT-PCR: which method is more successful in detecting VHSV and IHNV in fish tissue sampled under field conditions?
abstract: This study compared the results of reverse transcription-polymerase chain reaction (RT-PCR) and traditional virus isolation on cell culture in detection of viral haemorrhagic septicaemia virus (VHSV) and infectious haematopoietic necrosis virus (IHNV). RT-PCR was used for 172 tissue sample pools (total of 859 fish) originating from a field survey on the occurrence of VHSV and IHNV in farmed and wild salmonids in Switzerland. These samples represented all sites with fish that were either identified as virus-positive by means of virus isolation (three sites, four positive tissue sample pools) and/or demonstrated positive anti-VHSV-antibody titres (83 sites, 121 positive blood samples) in a serum plaque neutralization test (SPNT). The RT-PCR technique confirmed the four VHSV-positive tissue sample pools detected by virus isolation and additionally identified one VHSV-positive sample that showed positive anti-VHSV-AB titres, but was negative in virus isolation. With IHNV, RT-PCR detected two positive samples not identified by virus isolation while in these fish the SPNT result had been questionable. One of the IHNV-positive samples represents the first detection of IHNV-RNA in wild brown trout in Switzerland. Compared to SPNT, the RT-PCR method detected, as with virus isolation, a much lower number of positive cases; reasons for this discrepancy are discussed. Our results indicate that RT-PCR can not only be successfully applied in field surveys, but may also be slightly more sensitive than virus isolation. However, in a titration experiment under laboratory conditions, the sensitivity of RT-PCR was not significantly higher when compared with virus isolation.
authors: Centre for Fish and Wildlife Health, Institute of Animal Pathology, Vetsuisse Faculty, Laenggasstrasse 122, Postfach, 3001 Bern, Switzerland.
authors: R
authors: R
authors: Knüsel
authors: S M
authors: SM
authors: Bergmann
authors: K
authors: K
authors: Einer-Jensen
authors: J
authors: J
authors: Casey
authors: H
authors: H
authors: Segner
authors: T
authors: T
authors: Wahli
mesh_terms: D000818:Animals; D029142:Infectious hematopoietic necrosis virus / Q000235:genetics / Q000302:isolation & purification*; D029141:Novirhabdovirus / Q000235:genetics / Q000302:isolation & purification*; D020133:Reverse Transcriptase Polymerase Chain Reaction; D012487:Salmonidae / Q000821:virology*; D012680:Sensitivity and Specificity