title: Photoactivated ethidium monoazide directly cleaves bacterial DNA and is applied to PCR for discrimination of live and dead bacteria.
abstract: Ethidium monoazide (EMA) is a DNA intercalating agent and a eukaryotic topoisomerase II poison. We found that EMA treatment and subsequent visible light irradiation (photoactivation or photolysis) shows a bactericidal effect, hence the mechanism was analyzed. When bacterial cells were treated with more than 10 microg/ml of EMA for 1 hr plus photoactivation for 20 min, cleavage of bacterial DNA was confirmed by agarose gel electrophoresis and electron microscopic studies. The cleavage of chromosomal DNA was seen when it was treated in vitro with EMA and photolysis, which showed that the cleavage directly took place without the assistance of DNA gyrase/topoisomerase IV and the DNA repair enzymes of bacteria. It was also verified, by using negatively supercoiled pBR322 DNA, that medium/high concentrations of EMA (1 to 100 microg/ml) led to breaks of double-stranded DNA and that low concentrations of EMA (10 to 100 ng/ml) generated a single-stranded break. EMA is known to easily penetrate dead but not live bacteria. After treatment of 10 microg/ml of EMA for 30 min and photoactivation for 5 min, EMA cleaved the DNA of dead but not live Klebsiella oxytoca. When the cleaved DNA was used for templates in PCR targeting 16S rDNA, PCR product from the dead bacteria was completely suppressed. We demonstrated that EMA and photolysis directly cleaved bacterial DNA and are effective tools for discriminating live from dead bacteria by PCR.
authors: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan. t_soezim@morinagamilk.co.jp
authors: Takashi
authors: T
authors: Soejima
authors: Ken-ichiro
authors: K
authors: Iida
authors: Tian
authors: T
authors: Qin
authors: Hiroaki
authors: H
authors: Taniai
authors: Masanori
authors: M
authors: Seki
authors: Akemi
authors: A
authors: Takade
authors: Shin-ichi
authors: S
authors: Yoshida
mesh_terms: D001386:Azides / Q000737:chemistry / Q000494:pharmacology* / Q000528:radiation effects; D053837:DNA Cleavage; D004269:DNA, Bacterial / Q000737:chemistry / Q000187:drug effects* / Q000528:radiation effects; D004278:DNA, Superhelical / Q000737:chemistry / Q000187:drug effects; D004926:Escherichia coli / Q000187:drug effects / Q000235:genetics / Q000528:radiation effects; D050296:Microbial Viability / Q000235:genetics; D008854:Microscopy, Electron / Q000379:methods; D009930:Organic Chemicals / Q000737:chemistry; D010782:Photolysis; D016133:Polymerase Chain Reaction / Q000379:methods*
chemical_list: D001386:Azides; D004269:DNA, Bacterial; D004278:DNA, Superhelical; D009930:Organic Chemicals; C474470:SYBR Gold nucleic acid gel stain; C014535:8-azidoethidium