title: Energy diagrams and mechanism for proton pumping in cytochrome c oxidase.
abstract: The powerful technique of energy diagrams has been used to analyze the mechanism for proton pumping in cytochrome c oxidase. Energy levels and barriers are derived starting out from recent kinetic experiments for the O to E transition, and are then refined using general criteria and a few additional experimental facts. Both allowed and non-allowed pathways are obtained in this way. A useful requirement is that the forward and backward rate should approach each other for the full membrane gradient. A key finding is that an electron on heme a (or the binuclear center) must have a significant lowering effect on the barrier for proton uptake, in order to prevent backflow from the pump-site to the N-side. While there is no structural gating in the present mechanism, there is thus an electronic gating provided by the electron on heme a. A quantitative analysis of the energy levels in the diagrams, leads to Prop-A of heme a(3) as the most likely position for the pump-site, and the Glu278 region as the place for the transition state for proton uptake. Variations of key redox potentials and pK(a) values during the pumping process are derived for comparison to experiments.
authors: Department of Biochemistry and Biophysics, Arrhenius Laboratory, Stockholm University, SE-106 91, Stockholm, Sweden. ps@physto.se
authors: Per E M
authors: PE
authors: Siegbahn
authors: Margareta R A
authors: MR
authors: Blomberg
mesh_terms: D001703:Biophysics / Q000379:methods; D002462:Cell Membrane / Q000378:metabolism; D004579:Electron Transport; D003576:Electron Transport Complex IV / Q000378:metabolism*; D004583:Electrons; D006418:Heme / Q000737:chemistry; D006863:Hydrogen-Ion Concentration; D007700:Kinetics; D008564:Membrane Potentials; D008954:Models, Biological; D008956:Models, Chemical; D010084:Oxidation-Reduction; D017494:Proton Pumps / Q000378:metabolism; D011522:Protons; D013816:Thermodynamics
chemical_list: D017494:Proton Pumps; D011522:Protons; D006418:Heme; D003576:Electron Transport Complex IV