title: Reciprocating motion on the nanoscale.
abstract: This paper analyzes the confined motion of a Brownian particle fluctuating between two conformational states with different potential profiles and different position-dependent rate constants of the transitions, the fluctuations arising from both thermal (equilibrium) and external (nonequilibrium) noise. The model illustrates a mechanism to transduce, on the nanoscale, the energy of nonequilibrium fluctuations into mechanical energy of reciprocating motion. Expressions for the reciprocating velocity and the efficiency of energy conversion are derived. These expressions are treated in more detail in the slow-fluctuation (quasi-equilibrium) regime, by simple perturbation theory arguments, and in the fast fluctuation limit, in terms of the potential of mean force. A notable observation is that the generalized driving force of the reciprocating motion is caused by two sources: the energy contribution due to the difference between the potential profiles of the states and the entropic contribution due to the difference between the position-dependent rate constants. Two illustrative examples are presented, where one of the two sources can be ignored and an exact solution is allowed. Among other aspects, we also discuss the ways to construct a molecular motor based on the reciprocating engine.
authors: Institute of Atomic and Molecular Sciences, Academia Sinica, P.O. Box 23-166 Taipei, Taiwan.
authors: Yu A
authors: YA
authors: Makhnovskii
authors: V M
authors: VM
authors: Rozenbaum
authors: D-Y
authors: DY
authors: Yang
authors: S H
authors: SH
authors: Lin