title: A solution study on the local and global structure changes of cytochrome c: an unfolding process induced by urea.
abstract: The local and global structural changes of cytochrome c induced by urea in aqueous solution have been studied using X-ray absorption spectroscopy (XAS) and small-angle X-ray scattering (SAXS). According to the XAS result, both the native (folded) protein and the unfolded protein exhibit the same preedge features taken at Fe K-edge, indicating that the Fe(III) in the heme group of the protein maintains a six-coordinated local structure in both the folded and unfolded states. Furthermore, the discernible differences in the X-ray absorption near-edge structure (XANES) of these two states are attributed to a possible spin transition of the Fe(III) from a low-spin state to a high-spin state during the unfolding process. The perseverance of six-coordination and the spin transition of the iron are reconciled by a proposed ligand exchange, with urea and water molecules replacing the methionine-80 and histidine-18 axial ligands, respectively. The SAXS result reveals a significant morphology change of cytochrome c from a globular shape of a radius of gyration R(g) = 12.8 A of the native protein to an elongated ellipsoid shape of R(g) = 29.7 A for the unfolded protein in the presence of concentrated urea. The extended X-ray absorption fine structure (EXAFS) data unveil the coordination geometries of Fe(III) in both the folded and unfolded state of cytochrome c. An initial spin transition of Fe(III) followed by an axial ligand exchange, accompanied by the change in the global envelope, is proposed for what happened in the protein unfolding process of cytochrome c.
authors: Department of Chemistry, National Taiwan University, Taipei 106, Taiwan.
authors: I-Jui
authors: IJ
authors: Hsu
authors: Ying-Jen
authors: YJ
authors: Shiu
authors: U-Ser
authors: US
authors: Jeng
authors: Tung-Ho
authors: TH
authors: Chen
authors: Yu-Shan
authors: YS
authors: Huang
authors: Ying-Huang
authors: YH
authors: Lai
authors: Ling-Na
authors: LN
authors: Tsai
authors: Ling-Yun
authors: LY
authors: Jang
authors: Jyh-Fu
authors: JF
authors: Lee
authors: Li-Jiaun
authors: LJ
authors: Lin
authors: Sheng-Hsien
authors: SH
authors: Lin
authors: Yu
authors: Y
authors: Wang
mesh_terms: D045304:Cytochromes c / Q000737:chemistry*; D008958:Models, Molecular; D011489:Protein Denaturation; D017510:Protein Folding; D012996:Solutions / Q000737:chemistry; D013052:Spectrometry, X-Ray Emission; D014508:Urea / Q000737:chemistry*; D014867:Water / Q000737:chemistry*
chemical_list: D012996:Solutions; D014867:Water; D014508:Urea; D045304:Cytochromes c