Temperature dependence of protein-hydration hydrodynamics by molecular dynamics simulations.
The dynamics of water molecules near the protein surface are different from those of bulk water and influence the structure and dynamics of the protein itself. To elucidate the temperature dependence hydration dynamics of water molecules, we present results from the molecular dynamic simulation of the water molecules surrounding two proteins (Carboxypeptidase inhibitor and Ovomucoid) at seven different temperatures (T=273 to 303 K, in increments of 5 K). Translational diffusion coefficients of the surface water and bulk water molecules were estimated from 2 ns molecular dynamics simulation trajectories. Temperature dependence of the estimated bulk water diffusion closely reflects the experimental values, while hydration water diffusion is retarded significantly due to the protein. Protein surface induced scaling of translational dynamics of the hydration waters is uniform over the temperature range studied, suggesting the importance protein-water interactions.
Lau
Edmond Y
EY
Biology and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, USA.
Krishnan
V V
VV
D010059:Ovomucin / Q000737:chemistry*; D010940:Plant Proteins / Q000737:chemistry*; D011480:Protease Inhibitors; D011487:Protein Conformation; D013696:Temperature; D014783:Viscosity; D014867:Water / Q000737:chemistry*
D010940:Plant Proteins; D011480:Protease Inhibitors; D014867:Water; D010059:Ovomucin