title: An integrated portable hand-held analyser for real-time isothermal nucleic acid amplification.
abstract: A compact hand-held heated fluorometric instrument for performing real-time isothermal nucleic acid amplification and detection is described. The optoelectronic instrument combines a Printed Circuit Board/Micro Electro Mechanical Systems (PCB/MEMS) reaction detection/chamber containing an integrated resistive heater with attached miniature LED light source and photo-detector and a disposable glass waveguide capillary to enable a mini-fluorometer. The fluorometer is fabricated and assembled in planar geometry, rolled into a tubular format and packaged with custom control electronics to form the hand-held reactor. Positive or negative results for each reaction are displayed to the user using an LED interface. Reaction data is stored in FLASH memory for retrieval via an in-built USB connection. Operating on one disposable 3 V lithium battery >12, 60 min reactions can be performed. Maximum dimensions of the system are 150 mm (h) x 48 mm (d) x 40 mm (w), the total instrument weight (with battery) is 140 g. The system produces comparable results to laboratory instrumentation when performing a real-time nucleic acid sequence-based amplification (NASBA) reaction, and also displayed comparable precision, accuracy and resolution to laboratory-based real-time nucleic acid amplification instrumentation. A good linear response (R2 = 0.948) to fluorescein gradients ranging from 0.5 to 10 microM was also obtained from the instrument indicating that it may be utilized for other fluorometric assays. This instrument enables an inexpensive, compact approach to in-field genetic screening, providing results comparable to laboratory equipment with rapid user feedback as to the status of the reaction.
authors.affiliation: College of Marine Science, University of South Florida, St Petersburg, FL, United States. msmith@marine.usf.edu
authors.forename: Matthew C
authors.initials: MC
authors.lastname: Smith
authors.forename: George
authors.initials: G
authors.lastname: Steimle
authors.forename: Stan
authors.initials: S
authors.lastname: Ivanov
authors.forename: Mark
authors.initials: M
authors.lastname: Holly
authors.forename: David P
authors.initials: DP
authors.lastname: Fries
mesh_terms: D005453:Fluorescence; D021141:Nucleic Acid Amplification Techniques / Q000295:instrumentation* / Q000379:methods*; D055095:Optics and Photonics; D013696:Temperature