title: Genetic variants in the leukemia-associated Rho guanine nucleotide exchange factor (ARHGEF12) gene are not associated with T2DM and related parameters in Caucasians (KORA study).
abstract: OBJECTIVE
  The aim of our study was to determine the variant pattern of the leukemia-associated Rho guanine nucleotide exchange factor (LARG, or ARHGEF12) gene and investigate whether LARG variants are associated with diabetes mellitus type 2 (T2DM), the metabolic syndrome (MetS), or related parameters such as insulin sensitivity in German Caucasians.
  
  
  METHODS
  We analyzed single nucleotide polymorphisms (SNPs) in the LARG gene in the 55-74-year-old individuals of the population-based German Caucasian Cooperative Health Research in the region of Augsberg (KORA) survey 4 (S4).
  
  
  METHODS
  Sequencing of Tyr1306Cys, which was of functional relevance in Pima Indians, in 48 randomly selected individuals and genotyping of 11 additional LARG SNPs in 1653 subjects were performed. Four linkage disequilibrium (LD) blocks (r(2)> or =0.8) were established and each block was statistically analyzed for association with metabolic traits. The association with T2DM and the MetS was analyzed by logistic regression in 1462 subjects, and HOMA-IR (homeostasis model assessment of insulin resistance) as a measure of insulin sensitivity was analyzed by the Kruskal-Wallis test in 1346 fasting subjects.
  
  
  RESULTS
  The polymorphism Tyr1306Cys, which was significantly associated with insulin sensitivity in Pima Indians, was not found in the KORA S4 population. Statistical analysis yielded no significant associations (P>0.05) between the analyzed LARG variants and T2DM, the MetS, or related parameters such as insulin sensitivity.
  
  
  CONCLUSIONS
  Caucasian individuals and Pima Indians differ in their genetic variance pattern in the LARG gene region. There is no evidence in the Caucasian KORA study that variants of the LARG gene confer susceptibility for T2DM, insulin sensitivity, or the MetS.
authors.affiliation: GSF National Research Center for Environment and Health, Institute of Epidemiology, Ingolstädter Landstrasse 1, D-85764, Neuherberg, Germany.
authors.forename: C
authors.initials: C
authors.lastname: Holzapfel
authors.forename: N
authors.initials: N
authors.lastname: Klopp
authors.forename: H
authors.initials: H
authors.lastname: Grallert
authors.forename: C
authors.initials: C
authors.lastname: Huth
authors.forename: C
authors.initials: C
authors.lastname: Gieger
authors.forename: C
authors.initials: C
authors.lastname: Meisinger
authors.forename: K
authors.initials: K
authors.lastname: Strassburger
authors.forename: G
authors.initials: G
authors.lastname: Giani
authors.forename: H E
authors.initials: HE
authors.lastname: Wichmann
authors.forename: H
authors.initials: H
authors.lastname: Laumen
authors.forename: H
authors.initials: H
authors.lastname: Hauner
authors.forename: C
authors.initials: C
authors.lastname: Herder
authors.forename: W
authors.initials: W
authors.lastname: Rathmann
authors.forename: T
authors.initials: T
authors.lastname: Illig
mesh_terms: D000368:Aged; D003924:Diabetes Mellitus, Type 2 / Q000235:genetics*; D020022:Genetic Predisposition to Disease; D014644:Genetic Variation; D005858:Germany; D020662:Guanine Nucleotide Exchange Factors / Q000235:genetics*; D006801:Humans; D015810:Linkage Disequilibrium; D024821:Metabolic Syndrome / Q000235:genetics*; D008875:Middle Aged; D020641:Polymorphism, Single Nucleotide; D064067:Rho Guanine Nucleotide Exchange Factors; D044465:White People / Q000235:genetics*
chemical_list: C577222:ARHGEF12 protein, human; D020662:Guanine Nucleotide Exchange Factors; D064067:Rho Guanine Nucleotide Exchange Factors