title: Proteomics characterization of mouse kidney peroxisomes by tandem mass spectrometry and protein correlation profiling.
abstract: The peroxisome represents a ubiquitous single membrane-bound key organelle that executes various metabolic pathways such as fatty acid degradation by alpha- and beta-oxidation, ether-phospholipid biosynthesis, metabolism of reactive oxygen species, and detoxification of glyoxylate in mammals. To fulfil this vast array of metabolic functions, peroxisomes accommodate approximately 50 different enzymes at least as identified until now. Interest in peroxisomes has been fueled by the discovery of a group of genetic diseases in humans, which are caused by either a defect in peroxisome biogenesis or the deficient activity of a distinct peroxisomal enzyme or transporter. Although this research has greatly improved our understanding of peroxisomes and their role in mammalian metabolism, deeper insight into biochemistry and functions of peroxisomes is required to expand our knowledge of this low abundance but vital organelle. In this work, we used classical subcellular fractionation in combination with MS-based proteomics methodologies to characterize the proteome of mouse kidney peroxisomes. We could identify virtually all known components involved in peroxisomal metabolism and biogenesis. Moreover through protein localization studies by using a quantitative MS screen combined with statistical analyses, we identified 15 new peroxisomal candidates. Of these, we further investigated five candidates by immunocytochemistry, which confirmed their localization in peroxisomes. As a result of this joint effort, we believe to have compiled the so far most comprehensive protein catalogue of mammalian peroxisomes.
authors.affiliation: Medizinisches Proteom-Center, Ruhr-Universitaet Bochum, Universitaetsstrasse 150, 44780 Bochum, Germany.
authors.forename: Sebastian
authors.initials: S
authors.lastname: Wiese
authors.forename: Thomas
authors.initials: T
authors.lastname: Gronemeyer
authors.forename: Rob
authors.initials: R
authors.lastname: Ofman
authors.forename: Markus
authors.initials: M
authors.lastname: Kunze
authors.forename: Cláudia P
authors.initials: CP
authors.lastname: Grou
authors.forename: José A
authors.initials: JA
authors.lastname: Almeida
authors.forename: Martin
authors.initials: M
authors.lastname: Eisenacher
authors.forename: Christian
authors.initials: C
authors.lastname: Stephan
authors.forename: Heiko
authors.initials: H
authors.lastname: Hayen
authors.forename: Lukas
authors.initials: L
authors.lastname: Schollenberger
authors.forename: Thomas
authors.initials: T
authors.lastname: Korosec
authors.forename: Hans R
authors.initials: HR
authors.lastname: Waterham
authors.forename: Wolfgang
authors.initials: W
authors.lastname: Schliebs
authors.forename: Ralf
authors.initials: R
authors.lastname: Erdmann
authors.forename: Johannes
authors.initials: J
authors.lastname: Berger
authors.forename: Helmut E
authors.initials: HE
authors.lastname: Meyer
authors.forename: Wilhelm
authors.initials: W
authors.lastname: Just
authors.forename: Jorge E
authors.initials: JE
authors.lastname: Azevedo
authors.forename: Ronald J A
authors.initials: RJ
authors.lastname: Wanders
authors.forename: Bettina
authors.initials: B
authors.lastname: Warscheid
mesh_terms: D000818:Animals; D002851:Chromatography, High Pressure Liquid; D007668:Kidney / Q000378:metabolism*; D051379:Mice; D020675:Peroxisomes / Q000378:metabolism*; D040901:Proteomics; D021241:Spectrometry, Mass, Electrospray Ionization; D053719:Tandem Mass Spectrometry / Q000379:methods*