A water-explicit lattice model of heat-, cold-, and pressure-induced protein unfolding.
We investigate the effect of temperature and pressure on polypeptide conformational stability using a two-dimensional square lattice model in which water is represented explicitly. The model captures many aspects of water thermodynamics, including the existence of density anomalies, and we consider here the simplest representation of a protein: a hydrophobic homopolymer. We show that an explicit treatment of hydrophobic hydration is sufficient to produce cold, pressure, and thermal denaturation. We investigate the effects of the enthalpic and entropic components of the water-protein interactions on the overall folding phase diagram, and show that even a schematic model such as the one we consider yields reasonable values for the temperature and pressure ranges within which highly compact homopolymer configurations are thermodynamically stable.
Patel
Bryan A
BA
Department of Chemical Engineering, Princeton University, Princeton, New Jersey, USA. patel@princeton.edu
Debenedetti
Pablo G
PG
Stillinger
Frank H
FH
Rossky
Peter J
PJ
D003080:Cold Temperature; D003198:Computer Simulation; D006358:Hot Temperature; D008956:Models, Chemical; D008958:Models, Molecular; D044367:Phase Transition; D011312:Pressure; D011487:Protein Conformation; D011489:Protein Denaturation; D011506:Proteins / Q000737:chemistry* / Q000648:ultrastructure*; D012997:Solvents / Q000737:chemistry; D014867:Water / Q000737:chemistry*
D011506:Proteins; D012997:Solvents; D014867:Water