title: Transcript profiling of the hypomethylated hog1 mutant of Arabidopsis.
abstract: Transcript profiling was used to look for genes that differ in expression between the SAH hydrolase deficient and hypomethylated hog1-1 mutant and the parental (HOG1) line. This analysis identified a subset of gene transcripts that were up-regulated in hog1-1 plants. The majority of these transcripts were from genes located in the pericentromeric heterochromatin. About a third of the genes are annotated as transposons or having transposon homology. Subsequent experiments using Northern blots, RT-PCR and real-time RT-PCR confirmed the up-regulation of 19 of the genes and identified a set of molecular probes for genes that are up-regulated in the hog1-1 background. Six (of six genes tested) of the hog1-1 up-regulated genes are also up-regulated in the hypomethylated ddm1 mutant, three in the hypomethylated met1 mutant and three in the dcl3 mutant. The results suggest that the hypomethylation in the mutant lines may have a causal role in the up-regulation of these transcripts.
authors.affiliation: Department of Genetics, University of Cambridge, Cambridge CB2 3EH, UK.
authors.forename: Nicholas David
authors.initials: ND
authors.lastname: Jordan
authors.forename: Jonathan Paul
authors.initials: JP
authors.lastname: West
authors.forename: Andrew
authors.initials: A
authors.lastname: Bottley
authors.forename: Mazhar
authors.initials: M
authors.lastname: Sheikh
authors.forename: Ian
authors.initials: I
authors.lastname: Furner
mesh_terms: D043383:Adenosylhomocysteinase / Q000235:genetics*; D017360:Arabidopsis / Q000235:genetics / Q000378:metabolism*; D029681:Arabidopsis Proteins / Q000235:genetics* / Q000378:metabolism; D015152:Blotting, Northern; D002874:Chromosome Mapping; D032461:Chromosomes, Plant; D019175:DNA Methylation; D020869:Gene Expression Profiling; D018506:Gene Expression Regulation, Plant; D020868:Gene Silencing; D006570:Heterochromatin / Q000378:metabolism; D009154:Mutation; D020411:Oligonucleotide Array Sequence Analysis; D012333:RNA, Messenger / Q000378:metabolism*; D020133:Reverse Transcriptase Polymerase Chain Reaction