title: Development of SCAR (sequence-characterized amplified region) markers as a complementary tool for identification of ginger (Zingiber officinale Roscoe) from crude drugs and multicomponent formulations.
abstract: Zingiber officinale Roscoe (common or culinary ginger) is an official drug in Ayurvedic, Indian herbal, Chinese, Japanese, African and British Pharmacopoeias. The objective of the present study was to develop DNA-based markers that can be applied for the identification and differentiation of the commercially important plant Z. officinale Roscoe from the closely related species Zingiber zerumbet (pinecone, bitter or 'shampoo' ginger) and Zingiber cassumunar [cassumunar or plai (Thai) ginger]. The rhizomes of the other two Zingiber species used in the present study are morphologically similar to that of Z. officinale Roscoe and can be used as its adulterants or contaminants. Various methods, including macroscopy, microscopy and chemoprofiling, have been reported for the quality control of crude ginger and its products. These methods are reported to have limitations in distinguishing Z. officinale from closely related species. Hence, newer complementary methods for correct identification of ginger are useful. In the present study, RAPD (random amplification of polymorphic DNA) analysis was used to identify putative species-specific amplicons for Z. officinale. These were further cloned and sequenced to develop SCAR (sequence-characterized amplified region) markers. The developed SCAR markers were tested in several non-Zingiber species commonly used in ginger-containing formulations. One of the markers, P3, was found to be specific for Z. officinale and was successfully applied for detection of Z. officinale from Trikatu, a multicomponent formulation.
authors.affiliation: Bioprospecting Laboratory, Interdisciplinary School of Health Sciences, University of Pune, Pune 411007, India.
authors.forename: Preeti
authors.initials: P
authors.lastname: Chavan
authors.forename: Dnyaneshwar
authors.initials: D
authors.lastname: Warude
authors.forename: Kalpana
authors.initials: K
authors.lastname: Joshi
authors.forename: Bhushan
authors.initials: B
authors.lastname: Patwardhan
mesh_terms: D002626:Chemistry, Pharmaceutical / Q000379:methods*; D003001:Cloning, Molecular; D017931:DNA Primers / Q000235:genetics; D018744:DNA, Plant / Q000032:analysis / Q000235:genetics; D004340:Drug Contamination; D005819:Genetic Markers / Q000235:genetics*; D020939:Zingiber officinale / Q000145:classification* / Q000235:genetics*; D004364:Pharmaceutical Preparations / Q000737:chemistry*; D010802:Phylogeny; D019105:Random Amplified Polymorphic DNA Technique; D027343:Rhizome / Q000235:genetics; D017422:Sequence Analysis, DNA; D013045:Species Specificity
chemical_list: D017931:DNA Primers; D018744:DNA, Plant; D005819:Genetic Markers; D004364:Pharmaceutical Preparations