title: Specific detection of reverse transcription-loop-mediated isothermal amplification amplicons for Taura syndrome virus by colorimetric dot-blot hybridization.
abstract: The goal of this study was to develop a field diagnosis system based on isothermal reverse transcription-loop-mediated amplification (RT-LAMP) for shrimp Taura syndrome virus (TSV), placing emphasis on specific and simple detection of the LAMP amplicons. After a single-tube RT-LAMP reaction for TSV was established, colorimetric dot-blot hybridization (DBH) was adopted to detect signals only from the target-derived amplicons. The results showed that the modified DBH offered unambiguous and sensitive detection of the TSV RT-LAMP amplicons without the UV cross-linking and denaturation steps. Together, TSV RT-LAMP-DBH assay reached the same dilution point as reverse transcription-nested polymerase chain reaction-agarose gel electrophoresis (RT-nPCR-AGE) for TSV detection. Specificity of the assay was demonstrated by the absence of DBH signal from yeast tRNA and various shrimp viruses. TSV RT-LAMP-DBH was applied to 125 Penaeus vannamei and demonstrated a very good concordance (kappa value, 0.823) with RT-nPCR-AGE assay in detection efficiency. Furthermore, a one-step guanidinium thiocyanate (GuSCN) homogenization method was established to provide RNA extraction efficiency comparable to that of the TRIzol Reagent for RT-LAMP. Requiring simply a heating apparatus, the GuSCN RNA extraction-isothermal RT-LAMP-DBH protocol has the potential for further development for diagnosis of diseases in the field.
authors.affiliation: Farming IntelliGene Technology Corporation, 2-1, Gungye Seventh Road, Taichung Industrial Park, Taichung City 407, Taiwan.
authors.forename: Ping-Hua
authors.initials: PH
authors.lastname: Teng
authors.forename: Chu-Liang
authors.initials: CL
authors.lastname: Chen
authors.forename: Ping-Feng
authors.initials: PF
authors.lastname: Sung
authors.forename: Fu-Chun
authors.initials: FC
authors.lastname: Lee
authors.forename: Bor-Rung
authors.initials: BR
authors.lastname: Ou
authors.forename: Pei-Yu
authors.initials: PY
authors.lastname: Lee
mesh_terms: D000818:Animals; D018076:DNA, Complementary; D021141:Nucleic Acid Amplification Techniques; D009693:Nucleic Acid Hybridization / Q000379:methods*; D033561:Penaeidae / Q000821:virology*; D012328:RNA Viruses / Q000302:isolation & purification*; D012367:RNA, Viral / Q000302:isolation & purification; D020133:Reverse Transcriptase Polymerase Chain Reaction / Q000379:methods*; D012680:Sensitivity and Specificity
chemical_list: D018076:DNA, Complementary; D012367:RNA, Viral