1A and 3D gene sequences of coxsackievirus B3 strain CC: variation and phylogenetic analysis.
Coxsackievirus B3 (CVB3) was thought to be the most common causative agent of life-threatening viral myocarditis. Coxsackievirus B3 strain CC (CVB3-CC) was isolated in China; however, no sequence data are available. The 1A and 3D regions of CVB3-CC were sequenced and phylogenetic analysis was done with reference to ten other CVB3 strains and all 36 prototype strains of human enterovirus B (HEV-B). Sequence analysis showed that the 1A gene region of CVB3-CC consisted of 207 nucleotides, encoding 69 amino acids; and the 3D gene region was comprised of 1386 nucleotides, encoding 462 amino acids. Variation analysis showed that the 3D gene of CVB3 strain CC varied the least among the two regions. Phylogenetic tree analysis of the 1A and 3D regions indicated that CVB3-CC clustered together with CVB3 Nancy strain suggesting that there may be a close evolutionary relationship between the two strains. Incongruity was observed between the non-structural protein gene and the structural protein gene trees, according to the topological structure, indicating that recombination was occurred among these strains.
Liu
Ming-Yu
MY
Geriatric Department, 2nd Hospital of Harbin Medical University, Harbin 150086, People's Republic of China.
Wu
Dong-Lai
DL
Liu
Ni-Hong
NH
Meng
Qing-Wen
QW
Meng
Fan-Chao
FC
D001483:Base Sequence; D029822:Enterovirus B, Human / Q000235:genetics*; D014644:Genetic Variation; D016679:Genome, Viral / Q000235:genetics; D006801:Humans; D008969:Molecular Sequence Data; D010802:Phylogeny; D017422:Sequence Analysis, DNA